FvH4_6g48630
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013915
Physical Location & Seq
Reverse (-)
36604646 .. 36607182
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48630.t1

Sequence Viewer

Length: 1083 bp
ATGGGCAGACCTCCTTGCTGTGACAAAGAAGGAGTCAAGAAAGGACCTTGGACTCCTGAAGAGGATATCATTTTAGTCTCTTACATTCAAGAACATGGACCTGGAAATTGGAGGGCTGTTCCTACCAATACTGGTTTGCTTAGATGTAGCAAGAGCTGCAGGCTTAGATGGACTAACTACCTTAGGCCTGGGATCAAACGTGGGAACTTCACTGACCATGAGGAGAAGATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCAATAGCTTCATACCTCCCTCAGAGAACTGACAATGACATCAAGAATTACTGGAACACCCACTTAAAGAAGAAGCTGAACAAGCTTACCCAAATTGGTGGTCACTCAAGAGATGAGGGATTCACTAGTAATTGTTCTCAGCAGGCAACAATAGCAAGAGGTCAGTGGGAGAGAAGGCTTCAAACTGATATCCACACGGCTCGACAGGCGCTTCGTGAAGCGCTTTCCCCTTCTGAGAATTACAAGACTGATGCATTTGCAAGCACTATGAGTTTGAGCAGTACTAGCACTAGTACTAGTACTGACTCGAAACCCTTAATGAATATTGTACCTGCAGGCCAATCACCATCAAACACTTTGAGTACTACTTATGCTTCAAGCACTGAGAACATTTCAAGGTTGCTCAAAGGTTGGATGAAAAATCCGCCAAAGTCAGCCAAGGCTAGTACCACTGCAGCTGCTGGTGTTCTTGATTCTACATCAAGTAATGAGGAGGCCACACTATCTGCAGCAAACACTATTACCACTACTAGTACTACTGGCCATGGAAATGTTGAATTGTCTAATGCACTTGAATCTCTGTTCGGTTTGGAGGGCTCACTTGAAGCTTCAAATTCAGATCTTTCCCCGACTATGTCGCCTGATCAGGGCAGCCTATTCCAAGCCGAAAGCAAGCCAGATGTCGACCAAGATCAATTGCCACTGTCATTGCTGGAGAAGTGGCTTTTTGATGAAGCTGCTGTTATTCATGGGAAAGAAGTACACTTTAGTGATTTTATGTCTTTAGATGGTGAAAATGCCGGCTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

361

Amino Acids

39.44

Weight (kDa)

6.16

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.9e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 954
AciI CCGC 1 cut(s) 695
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 8 cut(s) 553, 565, 571, 600, 634, 718, 805, 1032
AfeI AGCGCT 1 cut(s) 492
AfiI CCNNNNNNNGG 1 cut(s) 917
AgsI TTSAA 9 cut(s) 89, 245, 452, 648, 666, 827, 845, 875, 882
AhlI ACTAGT 4 cut(s) 395, 560, 566, 800
AjnI CCWGG 2 cut(s) 100, 187
AleI CACNNNNGTG 1 cut(s) 1038
AluBI AGCT 8 cut(s) 156, 248, 278, 346, 355, 728, 878, 1007
AluI AGCT 8 cut(s) 156, 248, 278, 346, 355, 728, 878, 1007
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 492
AoxI GGCC 4 cut(s) 185, 607, 765, 811
ApeKI GCWGC 7 cut(s) 156, 269, 725, 728, 779, 921, 1007
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 6 cut(s) 18, 50, 355, 387, 465, 497
AspLEI GCGC 2 cut(s) 481, 493
AspS9I GGNCC 2 cut(s) 44, 98
AsuHPI GGTGA 2 cut(s) 606, 1073
AvaII GGWCC 2 cut(s) 44, 98
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 813
BanII GRGCYC 1 cut(s) 869
BbvI GCAGC 7 cut(s) 143, 256, 715, 737, 791, 933, 994
BccI CCATC 5 cut(s) 162, 246, 258, 625, 1052
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 2 cut(s) 102, 189
BclI TGATCA 2 cut(s) 231, 913
BcoDI GTCTC 1 cut(s) 82
BcuI ACTAGT 4 cut(s) 395, 560, 566, 800
BfaI CTAG 6 cut(s) 396, 555, 561, 567, 714, 801
BfmI CTRYAG 4 cut(s) 157, 603, 723, 777
BfoI RGCGCY 2 cut(s) 482, 494
BfuAI ACCTGC 1 cut(s) 610
BglII AGATCT 1 cut(s) 889
BisI GCNGC 7 cut(s) 157, 270, 726, 729, 780, 922, 1008
BlsI GCNGC 7 cut(s) 158, 271, 727, 730, 781, 923, 1009
BmcAI AGTACT 5 cut(s) 553, 565, 571, 634, 805
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 2 cut(s) 44, 98
BmgT120I GGNCC 2 cut(s) 44, 98
BmrFI CCNGG 2 cut(s) 102, 189
BmsI GCATC 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 1004
BpuEI CTTGAG 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 47, 188, 708, 814
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 3 cut(s) 136, 326, 814
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 977
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 102, 189
BseDI CCNNGG 4 cut(s) 47, 188, 708, 814
BseGI GGATG 2 cut(s) 234, 690
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 4 cut(s) 305, 422, 495, 645
BseNI ACTGG 3 cut(s) 136, 326, 814
BseRI GAGGAG 2 cut(s) 236, 776
BseXI GCAGC 7 cut(s) 143, 256, 715, 737, 791, 933, 994
BshFI GGCC 4 cut(s) 187, 609, 767, 813
BsiSI CCGG 1 cut(s) 1071
BslI CCNNNNNNNGG 1 cut(s) 917
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 4 cut(s) 187, 609, 767, 813
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 5 cut(s) 192, 231, 889, 913, 961
Bsp19I CCATGG 1 cut(s) 814
BspACI CCGC 1 cut(s) 695
BspANI GGCC 4 cut(s) 187, 609, 767, 813
BspCNI CTCAG 4 cut(s) 304, 421, 496, 646
BspMAI CTGCAG 4 cut(s) 161, 607, 727, 781
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 3 cut(s) 136, 326, 814
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 4 cut(s) 47, 188, 708, 814
BssMI GATC 5 cut(s) 192, 231, 889, 913, 961
BssT1I CCWWGG 3 cut(s) 47, 708, 814
Bst2UI CCWGG 2 cut(s) 102, 189
Bst4CI ACNGT 1 cut(s) 975
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 6 cut(s) 161, 414, 532, 607, 944, 1072
BstDEI CTNAG 7 cut(s) 140, 164, 182, 291, 408, 504, 654
BstDSI CCRYGG 1 cut(s) 814
BstF5I GGATG 2 cut(s) 234, 690
BstH2I RGCGCY 2 cut(s) 482, 494
BstHHI GCGC 2 cut(s) 481, 493
BstKTI GATC 5 cut(s) 195, 234, 892, 916, 964
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 192, 231, 889, 913, 961
BstMWI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
BstNI CCWGG 2 cut(s) 102, 189
BstSCI CCNGG 2 cut(s) 100, 187
BstSFI CTRYAG 4 cut(s) 157, 603, 723, 777
BstV1I GCAGC 7 cut(s) 143, 256, 715, 737, 791, 933, 994
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 889
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 187, 609, 767, 813
BtgI CCRYGG 1 cut(s) 814
BtsCI GGATG 2 cut(s) 234, 690
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 5 cut(s) 210, 440, 651, 720, 971
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 6 cut(s) 161, 414, 532, 607, 944, 1072
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 2 cut(s) 481, 493
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 2 cut(s) 44, 98
Csp6I GTAC 8 cut(s) 552, 564, 570, 599, 633, 717, 804, 1031
CspCI CAANNNNNGTGG 2 cut(s) 960, 995
CviAII CATG 4 cut(s) 95, 218, 815, 1019
CviQI GTAC 8 cut(s) 552, 564, 570, 599, 633, 717, 804, 1031
DdeI CTNAG 7 cut(s) 140, 164, 182, 291, 408, 504, 654
DpnI GATC 5 cut(s) 194, 233, 891, 915, 963
DpnII GATC 5 cut(s) 192, 231, 889, 913, 961
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 684
Eco130I CCWWGG 3 cut(s) 47, 708, 814
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 869
Eco32I GATATC 2 cut(s) 67, 460
Eco47I GGWCC 2 cut(s) 44, 98
Eco47III AGCGCT 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 100, 187
EcoRV GATATC 2 cut(s) 67, 460
EcoT14I CCWWGG 3 cut(s) 47, 708, 814
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 869
ErhI CCWWGG 3 cut(s) 47, 708, 814
FaeI CATG 4 cut(s) 98, 221, 818, 1022
FaiI YATR 9 cut(s) 96, 219, 283, 539, 642, 816, 905, 1020, 1049
FatI CATG 4 cut(s) 94, 217, 814, 1018
FbaI TGATCA 2 cut(s) 231, 913
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 7 cut(s) 157, 270, 726, 729, 780, 922, 1008
FokI GGATG 2 cut(s) 221, 697
FriOI GRGCYC 1 cut(s) 869
Fsp4HI GCNGC 7 cut(s) 157, 270, 726, 729, 780, 922, 1008
FspBI CTAG 6 cut(s) 396, 555, 561, 567, 714, 801
GlaI GCGC 2 cut(s) 480, 492
GluI GCNGC 7 cut(s) 157, 270, 726, 729, 780, 922, 1008
GsuI CTGGAG 1 cut(s) 1004
HaeII RGCGCY 2 cut(s) 482, 494
HaeIII GGCC 4 cut(s) 187, 609, 767, 813
HapII CCGG 1 cut(s) 1071
HhaI GCGC 2 cut(s) 481, 493
Hin1II CATG 4 cut(s) 98, 221, 818, 1022
Hin6I GCGC 2 cut(s) 479, 491
HinP1I GCGC 2 cut(s) 479, 491
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 2 cut(s) 353, 876
HinfI GANTC 6 cut(s) 33, 52, 390, 575, 743, 845
HpaII CCGG 1 cut(s) 1071
HphI GGTGA 2 cut(s) 606, 1073
Hpy166II GTNNAC 2 cut(s) 955, 1033
Hpy188I TCNGA 4 cut(s) 294, 505, 889, 1082
Hpy188III TCNNGA 7 cut(s) 37, 56, 89, 313, 378, 485, 740
Hpy8I GTNNAC 2 cut(s) 955, 1033
HpyAV CCTTC 3 cut(s) 23, 438, 510
HpyCH4III ACNGT 1 cut(s) 975
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 159, 272, 524, 530, 605, 725, 779, 839
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
HpyF3I CTNAG 7 cut(s) 140, 164, 182, 291, 408, 504, 654
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 98, 221, 818, 1022
HspAI GCGC 2 cut(s) 479, 491
KroI GCCGGC 1 cut(s) 1070
KroNI GCCGGC 1 cut(s) 1072
Ksp22I TGATCA 2 cut(s) 231, 913
Kzo9I GATC 5 cut(s) 192, 231, 889, 913, 961
Lsp1109I GCAGC 7 cut(s) 143, 256, 715, 737, 791, 933, 994
LweI GCATC 1 cut(s) 511
MaeI CTAG 6 cut(s) 396, 555, 561, 567, 714, 801
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 20, 371
MalI GATC 5 cut(s) 194, 233, 891, 915, 963
MboI GATC 5 cut(s) 192, 231, 889, 913, 961
MboII GAAGA 5 cut(s) 71, 233, 238, 352, 1069
MfeI CAATTG 1 cut(s) 965
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 869
MlsI TGGCCA 1 cut(s) 813
MluCI AATT 8 cut(s) 106, 316, 363, 400, 508, 827, 883, 965
MluNI TGGCCA 1 cut(s) 813
MlyI GAGTC 3 cut(s) 42, 46, 569
MmeI TCCRAC 1 cut(s) 662
Mox20I TGGCCA 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 526
MroNI GCCGGC 1 cut(s) 1070
MscI TGGCCA 1 cut(s) 813
MseI TTAA 2 cut(s) 335, 587
MslI CAYNNNNRTG 2 cut(s) 819, 1038
Msp20I TGGCCA 1 cut(s) 813
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 1071
MspR9I CCNGG 2 cut(s) 102, 189
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 2 cut(s) 102, 189
MwoI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
NaeI GCCGGC 1 cut(s) 1072
NcoI CCATGG 1 cut(s) 814
NdeII GATC 5 cut(s) 192, 231, 889, 913, 961
NgoMIV GCCGGC 1 cut(s) 1070
NlaIII CATG 4 cut(s) 98, 221, 818, 1022
NmuCI GTSAC 2 cut(s) 20, 371
NsiI ATGCAT 1 cut(s) 526
OliI CACNNNNGTG 1 cut(s) 1038
PceI AGGCCT 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 1072
PfeI GAWTC 3 cut(s) 390, 743, 845
PflFI GACNNNGTC 1 cut(s) 904
PkrI GCNGC 7 cut(s) 158, 271, 727, 730, 781, 923, 1009
PleI GAGTC 3 cut(s) 41, 46, 569
PpsI GAGTC 3 cut(s) 41, 46, 569
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 100, 187
PspGI CCWGG 2 cut(s) 100, 187
PspPI GGNCC 2 cut(s) 44, 98
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 4 cut(s) 161, 607, 727, 781
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 889
PsyI GACNNNGTC 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 8 cut(s) 553, 565, 571, 600, 634, 718, 805, 1032
RsaNI GTAC 8 cut(s) 552, 564, 570, 599, 633, 717, 804, 1031
RseI CAYNNNNRTG 2 cut(s) 819, 1038
SalI GTCGAC 1 cut(s) 953
SaqAI TTAA 2 cut(s) 335, 587
SatI GCNGC 7 cut(s) 157, 270, 726, 729, 780, 922, 1008
Sau3AI GATC 5 cut(s) 192, 231, 889, 913, 961
Sau96I GGNCC 2 cut(s) 44, 98
SbfI CCTGCAGG 1 cut(s) 607
ScaI AGTACT 5 cut(s) 553, 565, 571, 634, 805
SchI GAGTC 3 cut(s) 42, 46, 569
ScrFI CCNGG 2 cut(s) 102, 189
SdaI CCTGCAGG 1 cut(s) 607
SduI GDGCHC 1 cut(s) 869
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 4 cut(s) 157, 603, 723, 777
SinI GGWCC 2 cut(s) 44, 98
SmiMI CAYNNNNRTG 2 cut(s) 819, 1038
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SpeI ACTAGT 4 cut(s) 395, 560, 566, 800
Sse8387I CCTGCAGG 1 cut(s) 607
Sse9I AATT 8 cut(s) 106, 316, 363, 400, 508, 827, 883, 965
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 695
SspI AATATT 1 cut(s) 595
SspMI CTAG 6 cut(s) 396, 555, 561, 567, 714, 801
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 3 cut(s) 47, 708, 814
TaaI ACNGT 1 cut(s) 975
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 472, 578, 954
TasI AATT 8 cut(s) 106, 316, 363, 400, 508, 827, 883, 965
TatI WGTACW 6 cut(s) 551, 563, 569, 632, 803, 1030
TfiI GAWTC 3 cut(s) 390, 743, 845
Tru1I TTAA 2 cut(s) 335, 587
Tru9I TTAA 2 cut(s) 335, 587
TscAI CASTG 5 cut(s) 217, 440, 658, 727, 978
TseFI GTSAC 2 cut(s) 20, 371
TseI GCWGC 7 cut(s) 156, 269, 725, 728, 779, 921, 1007
Tsp45I GTSAC 2 cut(s) 20, 371
TspDTI ATGAA 5 cut(s) 270, 605, 701, 1007, 1017
TspRI CASTG 5 cut(s) 217, 440, 658, 727, 978
Tth111I GACNNNGTC 1 cut(s) 904
VpaK11BI GGWCC 2 cut(s) 44, 98
XapI RAATTY 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 954
XspI CTAG 6 cut(s) 396, 555, 561, 567, 714, 801
ZrmI AGTACT 5 cut(s) 553, 565, 571, 634, 805
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.