Rh2AG604200
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013915
Physical Location & Seq
Reverse (-)
83264156 .. 83266768
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG604200.1

Sequence Viewer

Length: 864 bp
ATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCAATAGCCTCATACCTCCCTCAGAGAACTGACAATGACATTAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTGAACAAGCTTACCCAAATTGGTGGTCACTCAAAAGATGAGGGATTCACTAGTACTTGTTCTCAGCAGGCAACAATAGCAAGAGGTCAATGGGAGAGAAGGCTTCAAACTGATATCCACACGGCTCGACAAGCTCTTCGTGAAGCGCTTTCCCCTGCCGAGAATTACAAGCCTGATGGATTTGCAAGCTCTGTGAGTTTGAGCAGTACTAGCACTAGTACTAGTACTGACTTGAAACCCTCAATGGATATTGTACCTGCAGGCCAGTCGGATCAATCACCCTCAACCACTTTGAGTACTACCTATGCTTCAAGCACTGAGAACATTTCAAGGTTGCTCAAAGGTTGGATGAAAAATCAGCCCAAGTCATCCAAGACTGGTACCACTGCAGCTGCTGGGGTTATTGATTCTACATCAAGTAATGAGGAGGCCACACTATCTGCAGGAAACACTACTACCACTACTAGTACTGCTGGCCATGGAAATATCCAATTGTCTAATGCATTTGAATCTCTGTTCGGTTTTGAATGCTCACTTGAAGCTTCAAATTCTGATCTCTCCCCGACTATGTCACCTGATCAGGGCAGCCTATTCCAAGCCGAAAGCAAGCCGGATGTTGGCCAAGATCAAATGCCACTCTCATTGCTGGAGAAGTGGCTTTTTGATGAAGCTGCCGTTATTCATGGGAAAGAAGTGCACTTCAGTGATTTTATTGCTCTAGATGGTGAAAATGCTAACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

31.03

Weight (kDa)

5.36

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 36 1.3e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 2 cut(s) 592, 736
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 802
AfaI GTAC 8 cut(s) 172, 325, 337, 343, 372, 415, 499, 586
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 698, 734
AhlI ACTAGT 4 cut(s) 167, 332, 338, 581
AleI CACNNNNGTG 1 cut(s) 819
AluBI AGCT 8 cut(s) 20, 118, 127, 251, 306, 509, 659, 788
AluI AGCT 8 cut(s) 20, 118, 127, 251, 306, 509, 659, 788
Alw21I GWGCWC 1 cut(s) 816
Alw44I GTGCAC 1 cut(s) 812
AlwI GGATC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 512
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 4 cut(s) 379, 546, 592, 736
ApaLI GTGCAC 1 cut(s) 812
ApeKI GCWGC 5 cut(s) 41, 506, 509, 702, 788
ApoI RAATTY 1 cut(s) 664
ArsI GACNNNNNNTTYG 4 cut(s) 127, 159, 237, 269
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 387, 681, 854
BaeGI GKGCMC 1 cut(s) 816
BalI TGGCCA 2 cut(s) 594, 738
BanI GGYRCC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 5 cut(s) 28, 496, 518, 714, 775
BccI CCATC 4 cut(s) 18, 30, 287, 833
BceAI ACGGC 2 cut(s) 255, 776
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BclI TGATCA 2 cut(s) 3, 694
BcuI ACTAGT 4 cut(s) 167, 332, 338, 581
BfaI CTAG 6 cut(s) 168, 327, 333, 339, 582, 836
BfmI CTRYAG 3 cut(s) 375, 504, 558
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 5 cut(s) 42, 507, 510, 703, 789
BlsI GCNGC 5 cut(s) 43, 508, 511, 704, 790
BmcAI AGTACT 6 cut(s) 172, 325, 337, 343, 415, 586
BmiI GGNNCC 1 cut(s) 499
BpmI CTGGAG 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 595
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 734
Bse1I ACTGG 3 cut(s) 98, 382, 499
Bse3DI GCAATG 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 4 cut(s) 6, 471, 485, 736
BseLI CCNNNNNNNGG 2 cut(s) 698, 734
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 3 cut(s) 77, 194, 426
BseNI ACTGG 3 cut(s) 98, 382, 499
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 5 cut(s) 28, 496, 518, 714, 775
BseYI CCCAGC 1 cut(s) 512
BshFI GGCC 4 cut(s) 381, 548, 594, 738
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 698, 734
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 4 cut(s) 381, 548, 594, 738
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 5 cut(s) 3, 388, 670, 694, 742
Bsp19I CCATGG 1 cut(s) 595
BspANI GGCC 4 cut(s) 381, 548, 594, 738
BspCNI CTCAG 3 cut(s) 76, 193, 427
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 3 cut(s) 379, 508, 562
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 1 cut(s) 396
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 758
BsrI ACTGG 3 cut(s) 98, 382, 499
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 5 cut(s) 3, 388, 670, 694, 742
BssT1I CCWWGG 1 cut(s) 595
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 5 cut(s) 186, 304, 379, 592, 725
BstDEI CTNAG 3 cut(s) 63, 180, 435
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 4 cut(s) 6, 471, 485, 736
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 6, 391, 673, 697, 745
BstMBI GATC 5 cut(s) 3, 388, 670, 694, 742
BstMWI GCNNNNNNNGC 5 cut(s) 47, 124, 194, 248, 327
BstSFI CTRYAG 3 cut(s) 375, 504, 558
BstSLI GKGCMC 1 cut(s) 816
BstV1I GCAGC 5 cut(s) 28, 496, 518, 714, 775
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 4 cut(s) 381, 548, 594, 738
BtgI CCRYGG 1 cut(s) 595
BtsCI GGATG 4 cut(s) 6, 471, 485, 736
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 3 cut(s) 432, 501, 826
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 5 cut(s) 186, 304, 379, 592, 725
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 8 cut(s) 171, 324, 336, 342, 371, 414, 498, 585
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
CviAII CATG 2 cut(s) 596, 800
CviQI GTAC 8 cut(s) 171, 324, 336, 342, 371, 414, 498, 585
DdeI CTNAG 3 cut(s) 63, 180, 435
DpnI GATC 5 cut(s) 5, 390, 672, 696, 744
DpnII GATC 5 cut(s) 3, 388, 670, 694, 742
EaeI YGGCCR 2 cut(s) 592, 736
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 595
Eco32I GATATC 1 cut(s) 232
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 2 cut(s) 599, 803
FaiI YATR 5 cut(s) 55, 423, 597, 686, 801
FatI CATG 2 cut(s) 595, 799
FbaI TGATCA 2 cut(s) 3, 694
Fnu4HI GCNGC 5 cut(s) 42, 507, 510, 703, 789
FokI GGATG 3 cut(s) 472, 478, 743
Fsp4HI GCNGC 5 cut(s) 42, 507, 510, 703, 789
FspBI CTAG 6 cut(s) 168, 327, 333, 339, 582, 836
GlaI GCGC 1 cut(s) 264
GluI GCNGC 5 cut(s) 42, 507, 510, 703, 789
GsaI CCCAGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 785
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 4 cut(s) 381, 548, 594, 738
HapII CCGG 1 cut(s) 728
HhaI GCGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 599, 803
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 2 cut(s) 125, 657
HinfI GANTC 3 cut(s) 162, 524, 626
HpaII CCGG 1 cut(s) 728
HphI GGTGA 3 cut(s) 387, 681, 854
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 4 cut(s) 66, 388, 670, 863
Hpy188III TCNNGA 2 cut(s) 257, 836
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 44, 302, 377, 506, 560, 620, 814
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 124, 194, 248, 327
HpyF3I CTNAG 3 cut(s) 63, 180, 435
Hsp92II CATG 2 cut(s) 599, 803
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 501
Ksp22I TGATCA 2 cut(s) 3, 694
Kzo9I GATC 5 cut(s) 3, 388, 670, 694, 742
LguI GCTCTTC 1 cut(s) 258
Lsp1109I GCAGC 5 cut(s) 28, 496, 518, 714, 775
MaeI CTAG 6 cut(s) 168, 327, 333, 339, 582, 836
MaeIII GTNAC 2 cut(s) 143, 687
MalI GATC 5 cut(s) 5, 390, 672, 696, 744
MboI GATC 5 cut(s) 3, 388, 670, 694, 742
MboII GAAGA 4 cut(s) 5, 121, 124, 245
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 2 cut(s) 594, 738
MluCI AATT 5 cut(s) 88, 135, 280, 608, 664
MluNI TGGCCA 2 cut(s) 594, 738
MmeI TCCRAC 2 cut(s) 366, 443
MnlI CCTC 9 cut(s) 61, 68, 72, 151, 194, 367, 409, 535, 538
Mox20I TGGCCA 2 cut(s) 594, 738
Mph1103I ATGCAT 1 cut(s) 622
MscI TGGCCA 2 cut(s) 594, 738
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 819
Msp20I TGGCCA 2 cut(s) 594, 738
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 728
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 650
MwoI GCNNNNNNNGC 5 cut(s) 47, 124, 194, 248, 327
NcoI CCATGG 1 cut(s) 595
NdeII GATC 5 cut(s) 3, 388, 670, 694, 742
NlaIII CATG 2 cut(s) 599, 803
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 143, 687
NsiI ATGCAT 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 819
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 1 cut(s) 650
PfeI GAWTC 3 cut(s) 162, 524, 626
PflFI GACNNNGTC 1 cut(s) 685
PkrI GCNGC 5 cut(s) 43, 508, 511, 704, 790
PspFI CCCAGC 1 cut(s) 512
PspN4I GGNNCC 1 cut(s) 499
PstI CTGCAG 3 cut(s) 379, 508, 562
PstNI CAGNNNCTG 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 8 cut(s) 172, 325, 337, 343, 372, 415, 499, 586
RsaNI GTAC 8 cut(s) 171, 324, 336, 342, 371, 414, 498, 585
RseI CAYNNNNRTG 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 5 cut(s) 42, 507, 510, 703, 789
Sau3AI GATC 5 cut(s) 3, 388, 670, 694, 742
SbfI CCTGCAGG 1 cut(s) 379
ScaI AGTACT 6 cut(s) 172, 325, 337, 343, 415, 586
SdaI CCTGCAGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 816
SfcI CTRYAG 3 cut(s) 375, 504, 558
SmiMI CAYNNNNRTG 1 cut(s) 819
SpeI ACTAGT 4 cut(s) 167, 332, 338, 581
Sse8387I CCTGCAGG 1 cut(s) 379
Sse9I AATT 5 cut(s) 88, 135, 280, 608, 664
SspMI CTAG 6 cut(s) 168, 327, 333, 339, 582, 836
StyI CCWWGG 1 cut(s) 595
TaqI TCGA 1 cut(s) 244
TasI AATT 5 cut(s) 88, 135, 280, 608, 664
TatI WGTACW 6 cut(s) 170, 323, 335, 341, 413, 584
TfiI GAWTC 3 cut(s) 162, 524, 626
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 3 cut(s) 439, 508, 826
TseFI GTSAC 2 cut(s) 143, 687
TseI GCWGC 5 cut(s) 41, 506, 509, 702, 788
Tsp45I GTSAC 2 cut(s) 143, 687
TspDTI ATGAA 3 cut(s) 482, 788, 798
TspRI CASTG 3 cut(s) 439, 508, 826
Tth111I GACNNNGTC 1 cut(s) 685
VneI GTGCAC 1 cut(s) 812
XapI RAATTY 1 cut(s) 664
XbaI TCTAGA 1 cut(s) 835
XspI CTAG 6 cut(s) 168, 327, 333, 339, 582, 836
ZrmI AGTACT 6 cut(s) 172, 325, 337, 343, 415, 586
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.