MD17G1050900.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013915
Physical Location & Seq
Forward (+)
3773934 .. 3775891
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1050900.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGGGGAGGCCTCCTTGCTGTGACAAAGAAGGGATCAAGAAAGGACCTTGGACTCCTGAAGAAGACATCAGTTTAGTCTCTTACATTCAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCTACCAACACAGGGCTGCATAGATGCAGTAAAAGTTGCAGGCTTAGATGGACTAATTACCTCAGGCCAGGGATCAAGCGTGGTAACTTTACTGACCATGAGGAGAAGATGATCATCCACCTTCAAGCTCTTTTGGGTAATAGATGGGCTGCAATAGCTTCATACCTCCCTCAGAGAACTGACAATGACATTAAAAACTATTGGAACACACACTTGAGGAAGAAGCTGATCAAGCTCCAAGCTGCAGGAGGAGGCACTGAAGGCCTTCACTCTAAAGATCAAGGAAACAGTAATTCTTCCTCACAGGCAATATCCAGAGGACAATGGGAGAGGAGGCTTCAAACAGACATCCACATGGCCAGGCAAGCTCTCAGAGATGCCCTTTCCCCAGAAAAGCCACTGGCTTTGAGTTCTGATTTGAATCCCGCAGATGGGTTTTCGATTTCGAACCTGAAAAACCCAACTCTAGATCAATCAAGCAATTCTACTTATGCTTCAAGCACTGAGAACATTTCAAGATTGTTGAAAGGTTGGATGAAAAACCCACCAAATAAATCAGCTAGATTAACCAACTTGGCTAATAATCAGACAGATTATCAGCATTATTCATCTAGTGAGGGAACCACATCTGTGGCAAATACTGCGAATAGTGGCAATGTTGAGTTATCTGATACATTTGAGTCTCTGTTCGGTTTTGAGTCCTCGAATTCCGATTTGTCTCCATCCATGTCGCCGGAGGCCAGCCTATTCCAGGGCGAAAGCAAGCCGGATCTTATCAGCGGCCAGTTGCCGCTGTCGTTTCTTGAGAAGTGGCTGTTTGATGAAGGTGCTGCTGCTGCTGCTCTAGGGAAAGACCACTTCTTTAGTGATACGGTGACACCAGATCATGGAAATGCTAACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

343

Amino Acids

37.79

Weight (kDa)

6.8

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.9e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.6e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 1.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1007
AciI CCGC 3 cut(s) 546, 900, 911
AclWI GGATC 3 cut(s) 41, 200, 897
AcoI YGGCCR 2 cut(s) 477, 901
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 2 cut(s) 78, 399
AfiI CCNNNNNNNGG 5 cut(s) 132, 551, 552, 871, 1007
AgsI TTSAA 7 cut(s) 89, 245, 461, 541, 618, 636, 646
AjnI CCWGG 4 cut(s) 100, 187, 479, 870
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 7 cut(s) 248, 278, 346, 355, 362, 488, 680
AluI AGCT 7 cut(s) 248, 278, 346, 355, 362, 488, 680
Alw26I GTCTC 3 cut(s) 82, 807, 843
AlwI GGATC 3 cut(s) 41, 200, 897
AoxI GGCC 6 cut(s) 8, 185, 382, 477, 858, 901
ApeKI GCWGC 7 cut(s) 136, 269, 362, 950, 953, 956, 959
ApoI RAATTY 1 cut(s) 826
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 44, 98
AsuHPI GGTGA 1 cut(s) 1006
AsuII TTCGAA 1 cut(s) 566
AvaII GGWCC 2 cut(s) 44, 98
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 7 cut(s) 123, 256, 349, 937, 940, 943, 946
BccI CCATC 4 cut(s) 162, 258, 545, 850
BciT130I CCWGG 4 cut(s) 102, 189, 481, 872
BclI TGATCA 2 cut(s) 231, 348
BcoDI GTCTC 3 cut(s) 82, 807, 843
BfaI CTAG 4 cut(s) 587, 681, 732, 965
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 9 cut(s) 137, 270, 363, 901, 911, 951, 954, 957, 960
BlsI GCNGC 9 cut(s) 138, 271, 364, 902, 912, 952, 955, 958, 961
Bme1390I CCNGG 4 cut(s) 102, 189, 481, 872
Bme18I GGWCC 2 cut(s) 44, 98
BmgT120I GGNCC 2 cut(s) 44, 98
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 4 cut(s) 102, 189, 481, 872
BmsI GCATC 2 cut(s) 134, 487
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 355, 944
BsaBI GATNNNNATC 2 cut(s) 233, 540
BsaJI CCNNGG 3 cut(s) 47, 188, 871
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 551, 552, 871, 1007
Bse1I ACTGG 2 cut(s) 525, 904
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 2 cut(s) 233, 540
BseBI CCWGG 4 cut(s) 102, 189, 481, 872
BseDI CCNNGG 3 cut(s) 47, 188, 871
BseGI GGATG 4 cut(s) 234, 468, 660, 842
BseJI GATNNNNATC 2 cut(s) 233, 540
BseLI CCNNNNNNNGG 5 cut(s) 132, 551, 552, 871, 1007
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 4 cut(s) 196, 305, 505, 615
BseNI ACTGG 2 cut(s) 525, 904
BseRI GAGGAG 3 cut(s) 236, 384, 466
BseXI GCAGC 7 cut(s) 123, 256, 349, 937, 940, 943, 946
BshFI GGCC 6 cut(s) 10, 187, 384, 479, 860, 903
BsiSI CCGG 2 cut(s) 854, 887
BslI CCNNNNNNNGG 5 cut(s) 132, 551, 552, 871, 1007
BsmAI GTCTC 3 cut(s) 82, 807, 843
BsnI GGCC 6 cut(s) 10, 187, 384, 479, 860, 903
Bsp119I TTCGAA 1 cut(s) 566
Bsp143I GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
BspACI CCGC 3 cut(s) 546, 900, 911
BspANI GGCC 6 cut(s) 10, 187, 384, 479, 860, 903
BspCNI CTCAG 4 cut(s) 195, 304, 504, 616
BspLI GGNNCC 1 cut(s) 742
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 3 cut(s) 41, 200, 897
BspT104I TTCGAA 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 2 cut(s) 525, 904
BssECI CCNNGG 3 cut(s) 47, 188, 871
BssMI GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 4 cut(s) 102, 189, 481, 872
Bst4CI ACNGT 2 cut(s) 410, 994
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 161, 486, 862, 884
BstDEI CTNAG 5 cut(s) 164, 182, 291, 491, 624
BstENI CCTNNNNNAGG 1 cut(s) 869
BstF5I GGATG 4 cut(s) 234, 468, 660, 842
BstKTI GATC 8 cut(s) 36, 195, 234, 351, 400, 592, 892, 1006
BstMAI GTCTC 3 cut(s) 82, 807, 843
BstMBI GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
BstMWI GCNNNNNNNGC 7 cut(s) 275, 352, 381, 485, 761, 956, 959
BstNI CCWGG 4 cut(s) 102, 189, 481, 872
BstSCI CCNGG 4 cut(s) 100, 187, 479, 870
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 7 cut(s) 123, 256, 349, 937, 940, 943, 946
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 1 cut(s) 889
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 6 cut(s) 10, 187, 384, 479, 860, 903
BtsCI GGATG 4 cut(s) 234, 468, 660, 842
BtsIMutI CAGTG 3 cut(s) 375, 518, 621
Cac8I GCNNGC 4 cut(s) 161, 486, 862, 884
Cfr13I GGNCC 2 cut(s) 44, 98
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 5 cut(s) 95, 218, 475, 847, 1007
DdeI CTNAG 5 cut(s) 164, 182, 291, 491, 624
DpnI GATC 8 cut(s) 35, 194, 233, 350, 399, 591, 891, 1005
DpnII GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
EaeI YGGCCR 2 cut(s) 477, 901
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 2 cut(s) 10, 384
Eco47I GGWCC 2 cut(s) 44, 98
Eco57I CTGAAG 2 cut(s) 78, 399
Eco81I CCTNAGG 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 4 cut(s) 100, 187, 479, 870
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 98, 221, 478, 850, 1010
FaiI YATR 8 cut(s) 96, 141, 219, 283, 476, 612, 848, 1008
FatI CATG 5 cut(s) 94, 217, 474, 846, 1006
FauI CCCGC 1 cut(s) 553
FbaI TGATCA 2 cut(s) 231, 348
Fnu4HI GCNGC 9 cut(s) 137, 270, 363, 901, 911, 951, 954, 957, 960
FokI GGATG 4 cut(s) 221, 455, 667, 829
Fsp4HI GCNGC 9 cut(s) 137, 270, 363, 901, 911, 951, 954, 957, 960
FspBI CTAG 4 cut(s) 587, 681, 732, 965
GluI GCNGC 9 cut(s) 137, 270, 363, 901, 911, 951, 954, 957, 960
HaeIII GGCC 6 cut(s) 10, 187, 384, 479, 860, 903
HapII CCGG 2 cut(s) 854, 887
Hin1II CATG 5 cut(s) 98, 221, 478, 850, 1010
HinfI GANTC 4 cut(s) 52, 541, 800, 818
HpaII CCGG 2 cut(s) 854, 887
HphI GGTGA 1 cut(s) 1006
Hpy188I TCNGA 7 cut(s) 294, 494, 535, 708, 790, 832, 1028
Hpy188III TCNNGA 7 cut(s) 37, 56, 89, 435, 587, 636, 923
HpyAV CCTTC 5 cut(s) 23, 251, 374, 395, 938
HpyCH4III ACNGT 2 cut(s) 410, 994
HpyCH4V TGCA 5 cut(s) 139, 147, 159, 272, 365
HpyF10VI GCNNNNNNNGC 7 cut(s) 275, 352, 381, 485, 761, 956, 959
HpyF3I CTNAG 5 cut(s) 164, 182, 291, 491, 624
Hsp92II CATG 5 cut(s) 98, 221, 478, 850, 1010
Ksp22I TGATCA 2 cut(s) 231, 348
Kzo9I GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 7 cut(s) 123, 256, 349, 937, 940, 943, 946
LweI GCATC 2 cut(s) 134, 487
MaeI CTAG 4 cut(s) 587, 681, 732, 965
MaeIII GTNAC 3 cut(s) 20, 203, 994
MalI GATC 8 cut(s) 35, 194, 233, 350, 399, 591, 891, 1005
MboI GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
MboII GAAGA 5 cut(s) 71, 74, 238, 352, 408
MflI RGATCY 1 cut(s) 889
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 5 cut(s) 106, 175, 412, 601, 826
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 3 cut(s) 46, 809, 827
MmeI TCCRAC 1 cut(s) 632
Mox20I TGGCCA 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 312, 686
MslI CAYNNNNRTG 3 cut(s) 473, 749, 1011
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 900, 913
MspI CCGG 2 cut(s) 854, 887
MspR9I CCNGG 4 cut(s) 102, 189, 481, 872
MvaI CCWGG 4 cut(s) 102, 189, 481, 872
MwoI GCNNNNNNNGC 7 cut(s) 275, 352, 381, 485, 761, 956, 959
NdeII GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
NlaIII CATG 5 cut(s) 98, 221, 478, 850, 1010
NlaIV GGNNCC 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 20, 994
NspV TTCGAA 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 749
PceI AGGCCT 2 cut(s) 10, 384
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 1007
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 9 cut(s) 138, 271, 364, 902, 912, 952, 955, 958, 961
PleI GAGTC 3 cut(s) 46, 808, 826
PpsI GAGTC 3 cut(s) 46, 808, 826
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 4 cut(s) 100, 187, 479, 870
PspGI CCWGG 4 cut(s) 100, 187, 479, 870
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 2 cut(s) 44, 98
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 889
RseI CAYNNNNRTG 3 cut(s) 473, 749, 1011
SaqAI TTAA 2 cut(s) 312, 686
SatI GCNGC 9 cut(s) 137, 270, 363, 901, 911, 951, 954, 957, 960
Sau3AI GATC 8 cut(s) 33, 192, 231, 348, 397, 589, 889, 1003
Sau96I GGNCC 2 cut(s) 44, 98
SchI GAGTC 3 cut(s) 46, 809, 827
ScrFI CCNGG 4 cut(s) 102, 189, 481, 872
SfaNI GCATC 2 cut(s) 134, 487
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 566
SinI GGWCC 2 cut(s) 44, 98
SmiMI CAYNNNNRTG 3 cut(s) 473, 749, 1011
SmlI CTYRAG 2 cut(s) 334, 923
SmoI CTYRAG 2 cut(s) 334, 923
Sse9I AATT 5 cut(s) 106, 175, 412, 601, 826
SseBI AGGCCT 2 cut(s) 10, 384
SsiI CCGC 3 cut(s) 546, 900, 911
SspMI CTAG 4 cut(s) 587, 681, 732, 965
StuI AGGCCT 2 cut(s) 10, 384
StyD4I CCNGG 4 cut(s) 100, 187, 479, 870
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 410, 994
TaqI TCGA 3 cut(s) 560, 566, 824
TasI AATT 5 cut(s) 106, 175, 412, 601, 826
TauI GCSGC 2 cut(s) 903, 913
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 2 cut(s) 312, 686
Tru9I TTAA 2 cut(s) 312, 686
TscAI CASTG 3 cut(s) 382, 525, 628
TseFI GTSAC 2 cut(s) 20, 994
TseI GCWGC 7 cut(s) 136, 269, 362, 950, 953, 956, 959
Tsp45I GTSAC 2 cut(s) 20, 994
TspDTI ATGAA 4 cut(s) 270, 671, 717, 957
TspRI CASTG 3 cut(s) 382, 525, 628
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 2 cut(s) 44, 98
XagI CCTNNNNNAGG 1 cut(s) 869
XapI RAATTY 1 cut(s) 826
XbaI TCTAGA 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 4 cut(s) 587, 681, 732, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.