AT3G36659

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015910
Physical Location & Seq
Forward (+)
2100021 .. 2101402
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G36659.1

Sequence Viewer

Length: 795 bp
ATGGAGTTCAACAAAACCTATCGGATCATCGTGATCTTCACGGTTTCTATTTTGGTCACCATCTCTACGCATGTAGAATCCAGATCAGATTCTCCATTTTCGACACCAGCTCCGGCACCGGAAGTTATGAAACCTATCGCTAGTCCTGCAAATTCTCCGGCGGAGATATATACAGACTCTCCCGTTGCGTCTCCAGAAGCTCCAGCAGATTCATTTTCCCCAAAAAATCCTCCGGTCGAGATAGATATATACTCTCCCGCAGCGTCACCAGAGGCTCCTGTCGCATCACCAGAAGCTCCTGCGGAGTCTTCCTCTGCTGCACCATCTGGAATCAAAGTTTCGAGTTCTCCCAAAAGCCTTTTGAACCCGCCATTGTTATCTCCGGAGATCAAAACCATTTGCGGCAAAACCGATAACCCTCCGTTATGCGAATCTTCCGTTAGTCCTCTCTTAACGCCTCAACTGAAACCAAACACTTCCTCCGTCCTCATTCTCGCTATTCAAGCTTCGATCACCGCGACCAAGGCGGCCATGGCCATCGTCGAAAAAGTCGACGCCTCCGATTGTCAGGAGTTATATGATGATGCAGTTGTGAATTTGGAAGATGCAGTTAACGCCGTCAAGTCAAGTGACATTGCCACCGTTAACACAAACTTGAGCGCAGCGATGACAGATTACAGCACGTGTAACGACGGTTTTGAAGAATCGGGAGAGCCTAACCCGTTGGCTTACGTGGCCGATAAGCTTACGAAGATGGTTAGTAACTGTCTCGCCATCTCTACGTTGATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

264

Amino Acids

27.54

Weight (kDa)

4.37

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 130 - 259 3.3e-28 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G36659
fragaria_vesca FvH4_4g19570
malus_domestica MD16G1155100.v1.1
prunus_persica Prupe.1G118800_v2.0.a1
pyrus_communis pycom13g13250
rosa_chinensis RchiOBHm_Chr4g0424831
rosa_laevigata RLG00000007417
rosa_multiflora Rmu_sc0003608.1_g000023
rosa_roxburghii Rroxscaffold_5G00367050
rosa_rugosa Rorug04G0199400
rosa_samantha Rh4AG257200 Rh4BG262500 Rh4CG273500 Rh4DG258300
rosa_wichuraiana Rw4G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 552
AccII CGCG 1 cut(s) 518
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 7 cut(s) 161, 258, 302, 368, 402, 516, 527
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 3 cut(s) 528, 534, 735
AcsI RAATTY 2 cut(s) 151, 595
AcvI CACGTG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 4 cut(s) 10, 364, 503, 701
AluBI AGCT 5 cut(s) 110, 200, 296, 506, 745
AluI AGCT 5 cut(s) 110, 200, 296, 506, 745
Alw26I GTCTC 2 cut(s) 195, 773
AlwI GGATC 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 3 cut(s) 528, 534, 735
ApeKI GCWGC 3 cut(s) 260, 317, 662
ApoI RAATTY 2 cut(s) 151, 595
AspLEI GCGC 1 cut(s) 662
AsuHPI GGTGA 4 cut(s) 49, 258, 279, 505
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 272, 304, 674
BccI CCATC 5 cut(s) 68, 331, 545, 748, 782
BceAI ACGGC 1 cut(s) 602
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 2 cut(s) 195, 773
BfaI CTAG 1 cut(s) 141
BisI GCNGC 5 cut(s) 261, 318, 403, 528, 663
BlsI GCNGC 5 cut(s) 262, 319, 404, 529, 664
BmiI GGNNCC 2 cut(s) 117, 276
BmsI GCATC 3 cut(s) 293, 574, 595
BpiI GAAGAC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 2 cut(s) 177, 186
BpuEI CTTGAG 1 cut(s) 676
BsaAI YACGTR 2 cut(s) 684, 733
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 522, 531
BsaWI WCCGGW 3 cut(s) 118, 232, 382
BsaXI ACNNNNNCTCC 6 cut(s) 94, 124, 163, 193, 464, 494
Bse3DI GCAATG 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 522, 531
BseMI GCAATG 1 cut(s) 633
BseXI GCAGC 3 cut(s) 272, 304, 674
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 518
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 530, 536, 737
BshNI GGYRCC 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 5 cut(s) 113, 119, 158, 233, 383
BsmAI GTCTC 2 cut(s) 195, 773
BsmBI CGTCTC 1 cut(s) 195
BsnI GGCC 3 cut(s) 530, 536, 737
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 6 cut(s) 24, 33, 83, 387, 510, 786
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 7 cut(s) 161, 258, 302, 368, 402, 516, 527
BspANI GGCC 3 cut(s) 530, 536, 737
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 1 cut(s) 518
BspLI GGNNCC 2 cut(s) 117, 276
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 522, 531
BssMI GATC 6 cut(s) 24, 33, 83, 387, 510, 786
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 522, 531
Bst4CI ACNGT 4 cut(s) 43, 643, 695, 767
BstACI GRCGYC 1 cut(s) 555
BstBAI YACGTR 2 cut(s) 684, 733
BstDSI CCRYGG 1 cut(s) 531
BstEII GGTNACC 1 cut(s) 55
BstFNI CGCG 1 cut(s) 518
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 6 cut(s) 27, 36, 86, 390, 513, 789
BstMAI GTCTC 2 cut(s) 195, 773
BstMBI GATC 6 cut(s) 24, 33, 83, 387, 510, 786
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 7 cut(s) 146, 281, 503, 524, 533, 614, 734
BstNSI RCATGY 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 55
BstUI CGCG 1 cut(s) 518
BstV1I GCAGC 3 cut(s) 272, 304, 674
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 3 cut(s) 530, 536, 737
BtgI CCRYGG 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 680
CfoI GCGC 1 cut(s) 662
CseI GACGC 3 cut(s) 177, 252, 563
CviAII CATG 2 cut(s) 71, 532
DpnI GATC 6 cut(s) 26, 35, 85, 389, 512, 788
DpnII GATC 6 cut(s) 24, 33, 83, 387, 510, 786
EaeI YGGCCR 3 cut(s) 528, 534, 735
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 522, 531
Eco72I CACGTG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 522, 531
ErhI CCWWGG 2 cut(s) 522, 531
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 2 cut(s) 74, 535
FatI CATG 2 cut(s) 70, 531
FauI CCCGC 2 cut(s) 265, 375
FbaI TGATCA 1 cut(s) 786
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 261, 318, 403, 528, 663
Fsp4HI GCNGC 5 cut(s) 261, 318, 403, 528, 663
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 661
GluI GCNGC 5 cut(s) 261, 318, 403, 528, 663
GsuI CTGGAG 2 cut(s) 177, 186
HaeIII GGCC 3 cut(s) 530, 536, 737
HapII CCGG 5 cut(s) 113, 119, 158, 233, 383
HgaI GACGC 3 cut(s) 177, 252, 563
HhaI GCGC 1 cut(s) 662
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 2 cut(s) 74, 535
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HincII GTYRAC 3 cut(s) 553, 613, 646
HindII GTYRAC 3 cut(s) 553, 613, 646
HindIII AAGCTT 2 cut(s) 504, 743
HinfI GANTC 8 cut(s) 77, 89, 176, 209, 305, 330, 431, 704
HpaI GTTAAC 2 cut(s) 613, 646
HpaII CCGG 5 cut(s) 113, 119, 158, 233, 383
HphI GGTGA 4 cut(s) 49, 258, 279, 505
Hpy166II GTNNAC 3 cut(s) 553, 613, 646
Hpy188I TCNGA 3 cut(s) 24, 88, 562
Hpy188III TCNNGA 8 cut(s) 31, 81, 194, 238, 327, 383, 569, 708
Hpy8I GTNNAC 3 cut(s) 553, 613, 646
Hpy99I CGWCG 3 cut(s) 545, 557, 695
HpyCH4III ACNGT 4 cut(s) 43, 643, 695, 767
HpyCH4IV ACGT 3 cut(s) 683, 732, 782
HpyCH4V TGCA 4 cut(s) 149, 320, 587, 608
HpyF10VI GCNNNNNNNGC 7 cut(s) 146, 281, 503, 524, 533, 614, 734
HpySE526I ACGT 3 cut(s) 683, 732, 782
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 2 cut(s) 74, 535
HspAI GCGC 1 cut(s) 660
Kpn2I TCCGGA 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 786
KspAI GTTAAC 2 cut(s) 613, 646
Kzo9I GATC 6 cut(s) 24, 33, 83, 387, 510, 786
LmnI GCTCC 4 cut(s) 115, 205, 280, 301
Lsp1109I GCAGC 3 cut(s) 272, 304, 674
LweI GCATC 3 cut(s) 293, 574, 595
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 683, 732, 782
MaeIII GTNAC 5 cut(s) 55, 264, 629, 686, 761
MalI GATC 6 cut(s) 26, 35, 85, 389, 512, 788
MboI GATC 6 cut(s) 24, 33, 83, 387, 510, 786
MboII GAAGA 6 cut(s) 28, 300, 426, 614, 713, 763
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 2 cut(s) 151, 595
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 170, 314
MnlI CCTC 9 cut(s) 240, 265, 322, 429, 456, 468, 490, 497, 568
Mox20I TGGCCA 1 cut(s) 536
MroI TCCGGA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 452, 612, 645
Msp20I TGGCCA 1 cut(s) 536
MspI CCGG 5 cut(s) 113, 119, 158, 233, 383
MvnI CGCG 1 cut(s) 518
MwoI GCNNNNNNNGC 7 cut(s) 146, 281, 503, 524, 533, 614, 734
NcoI CCATGG 1 cut(s) 531
NdeII GATC 6 cut(s) 24, 33, 83, 387, 510, 786
NlaIII CATG 2 cut(s) 74, 535
NlaIV GGNNCC 2 cut(s) 117, 276
NmuCI GTSAC 3 cut(s) 55, 264, 629
NspI RCATGY 1 cut(s) 74
PcsI WCGNNNNNNNCGW 3 cut(s) 515, 549, 558
PfeI GAWTC 6 cut(s) 77, 89, 209, 330, 431, 704
PkrI GCNGC 5 cut(s) 262, 319, 404, 529, 664
PleI GAGTC 2 cut(s) 170, 313
PmaCI CACGTG 1 cut(s) 684
PmlI CACGTG 1 cut(s) 684
PpsI GAGTC 2 cut(s) 170, 313
Ppu21I YACGTR 2 cut(s) 684, 733
PspCI CACGTG 1 cut(s) 684
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 117, 276
SalI GTCGAC 1 cut(s) 551
SaqAI TTAA 3 cut(s) 452, 612, 645
SatI GCNGC 5 cut(s) 261, 318, 403, 528, 663
Sau3AI GATC 6 cut(s) 24, 33, 83, 387, 510, 786
SchI GAGTC 2 cut(s) 170, 314
SfaNI GCATC 3 cut(s) 293, 574, 595
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 2 cut(s) 151, 595
SsiI CCGC 7 cut(s) 161, 258, 302, 368, 402, 516, 527
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 522, 531
TaaI ACNGT 4 cut(s) 43, 643, 695, 767
TaiI ACGT 3 cut(s) 686, 735, 785
TaqI TCGA 6 cut(s) 101, 237, 341, 509, 543, 552
TasI AATT 2 cut(s) 151, 595
TauI GCSGC 2 cut(s) 405, 530
TfiI GAWTC 6 cut(s) 77, 89, 209, 330, 431, 704
Tru1I TTAA 3 cut(s) 452, 612, 645
Tru9I TTAA 3 cut(s) 452, 612, 645
TseFI GTSAC 3 cut(s) 55, 264, 629
TseI GCWGC 3 cut(s) 260, 317, 662
Tsp45I GTSAC 3 cut(s) 55, 264, 629
TspDTI ATGAA 2 cut(s) 143, 201
TspGWI ACGGA 3 cut(s) 411, 427, 472
XapI RAATTY 2 cut(s) 151, 595
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.