Prupe.1G118800_v2.0.a1

pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015910
Physical Location & Seq
Forward (+)
9314174 .. 9315654
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G118800.1

Sequence Viewer

Length: 870 bp
ATGGAGCCAAAGTACCATACTCAATCACCTCTCATCATCTTATTTTTCTTCCTCTTTTGCTTCAACTTTGCACAGGCCGTTTGCAAGCCTCGGAATTTAAACTTAAGGTACCTAACTATTCCCTCTACATCACCAAATTCTCCTTCAAACTCGCAGCCGGCTATGTCCCCTACTAAGCCACAGCCGGGTCAATTCTTCTCTTCATGGCGCCCAACAGGTCCTCCACCAAGCCGTACTGCATCAGCCCCAAACCCTTCTTCACAGCCTCCAGAAAAACCACCTCCTGCTGGCAATTCTATTTCTCCTTCACCTTCCTCCACATCCTTTCTTCGCCACCCTTCTGATAATCCCAAAGACAGCCCGCGCAGCAACCTCTTTACACAATCTACATATCCCAAATCAGCTTCATCTTTTGTCCCACCTAACCCAGCAATCCAACAAATATGCAAAAACACTGACTACCCTGATATGTGCGTCTCATCTGTGGCCCCTTTCCTACCATTAGTACCCAAGCTGGACCCTGTAGCTGTGCTTGAGATGACAATCAAGGCAGCCACGACGCATGCCAAGTTGTCGCTAGCCGCGGCCTCAAAACTTGTGCTGATGAATAACATTGCCCGTGGCACAGCCGCTGCGCTCAGTGATTGCAAGGACATGTACGGTGATGCCTTGGATGGCCTTCAGAGTGCAATGGATGCAATCCAGAGCCGTGACATTGGCACGATCAATAGCATGCTCAGCGGGGTGGTGACAGATGCTATGACATGCGGGGATGGGTTTGAAGGAGAGAATTCTCCATTAGGGGATTATGATGACAAGCTTCACAAGATGGCCAGCAATTGCCTTGCCATTGCTTCCTTGATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

290

Amino Acids

30.88

Weight (kDa)

8.12

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G36659
fragaria_vesca FvH4_4g19570
malus_domestica MD16G1155100.v1.1
prunus_persica Prupe.1G118800_v2.0.a1
pyrus_communis pycom13g13250
rosa_chinensis RchiOBHm_Chr4g0424831
rosa_laevigata RLG00000007417
rosa_multiflora Rmu_sc0003608.1_g000023
rosa_roxburghii Rroxscaffold_5G00367050
rosa_rugosa Rorug04G0199400
rosa_samantha Rh4AG257200 Rh4BG262500 Rh4CG273500 Rh4DG258300
rosa_wichuraiana Rw4G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 2 cut(s) 108, 207
AccII CGCG 2 cut(s) 364, 584
AciI CCGC 6 cut(s) 362, 582, 584, 630, 741, 768
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 3 cut(s) 94, 136, 790
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 5 cut(s) 14, 110, 235, 507, 659
AfiI CCNNNNNNNGG 2 cut(s) 185, 287
AflII CTTAAG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 3 cut(s) 64, 147, 782
AjuI GAANNNNNNNTTGG 4 cut(s) 127, 159, 241, 273
AluBI AGCT 4 cut(s) 404, 514, 527, 820
AluI AGCT 4 cut(s) 404, 514, 527, 820
Alw26I GTCTC 1 cut(s) 481
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 5 cut(s) 75, 486, 585, 676, 831
ApeKI GCWGC 4 cut(s) 154, 366, 551, 632
ApoI RAATTY 3 cut(s) 94, 136, 790
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 3 cut(s) 210, 366, 637
AspS9I GGNCC 3 cut(s) 218, 487, 517
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 5 cut(s) 18, 123, 300, 674, 760
AsuNHI GCTAGC 1 cut(s) 577
AvaII GGWCC 2 cut(s) 218, 517
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 2 cut(s) 108, 207
BbvI GCAGC 4 cut(s) 166, 378, 563, 619
BccI CCATC 3 cut(s) 668, 767, 823
BceAI ACGGC 3 cut(s) 62, 216, 693
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 7 cut(s) 155, 367, 552, 582, 585, 630, 633
BlpI GCTNAGC 1 cut(s) 737
BlsI GCNGC 7 cut(s) 156, 368, 553, 583, 586, 631, 634
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 218, 517
BmgT120I GGNCC 3 cut(s) 218, 487, 517
BmiI GGNNCC 5 cut(s) 6, 110, 209, 489, 519
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 4 cut(s) 248, 655, 685, 745
BmtI GCTAGC 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 4 cut(s) 89, 582, 619, 669
BsaXI ACNNNNNCTCC 3 cut(s) 26, 205, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 287
Bse118I RCCGGY 1 cut(s) 157
Bse3DI GCAATG 3 cut(s) 612, 696, 849
Bse8I GATNNNNATC 1 cut(s) 542
BseDI CCNNGG 4 cut(s) 89, 582, 619, 669
BseGI GGATG 4 cut(s) 320, 679, 700, 778
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 2 cut(s) 185, 287
BseMI GCAATG 3 cut(s) 612, 696, 849
BseMII CTCAG 2 cut(s) 652, 751
BseXI GCAGC 4 cut(s) 166, 378, 563, 619
BseYI CCCAGC 1 cut(s) 427
Bsh1236I CGCG 2 cut(s) 364, 584
BshFI GGCC 5 cut(s) 77, 488, 587, 678, 833
BshNI GGYRCC 2 cut(s) 108, 207
BsiSI CCGG 2 cut(s) 158, 185
BslFI GGGAC 2 cut(s) 151, 401
BslI CCNNNNNNNGG 2 cut(s) 185, 287
BsmAI GTCTC 1 cut(s) 481
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 2 cut(s) 151, 401
BsnI GGCC 5 cut(s) 77, 488, 587, 678, 833
Bsp143I GATC 2 cut(s) 723, 861
Bsp1720I GCTNAGC 1 cut(s) 737
BspACI CCGC 6 cut(s) 362, 582, 584, 630, 741, 768
BspANI GGCC 5 cut(s) 77, 488, 587, 678, 833
BspCNI CTCAG 2 cut(s) 651, 750
BspFNI CGCG 2 cut(s) 364, 584
BspLI GGNNCC 5 cut(s) 6, 110, 209, 489, 519
BspOI GCTAGC 1 cut(s) 581
BspT107I GGYRCC 2 cut(s) 108, 207
BspTI CTTAAG 1 cut(s) 103
BsrDI GCAATG 3 cut(s) 612, 696, 849
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 89, 582, 619, 669
BssMI GATC 2 cut(s) 723, 861
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 669
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 8 cut(s) 86, 159, 289, 362, 564, 579, 734, 835
BstDEI CTNAG 3 cut(s) 174, 638, 737
BstDSI CCRYGG 2 cut(s) 582, 619
BstF5I GGATG 4 cut(s) 320, 679, 700, 778
BstFNI CGCG 2 cut(s) 364, 584
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 210, 366, 637
BstKTI GATC 2 cut(s) 726, 864
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 2 cut(s) 723, 861
BstMWI GCNNNNNNNGC 3 cut(s) 366, 695, 738
BstNSI RCATGY 4 cut(s) 566, 658, 736, 768
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 2 cut(s) 364, 584
BstV1I GCAGC 4 cut(s) 166, 378, 563, 619
BsuRI GGCC 5 cut(s) 77, 488, 587, 678, 833
BtgI CCRYGG 2 cut(s) 582, 619
BtsCI GGATG 4 cut(s) 320, 679, 700, 778
BtsIMutI CAGTG 2 cut(s) 453, 646
Cac8I GCNNGC 8 cut(s) 86, 159, 289, 362, 564, 579, 734, 835
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 3 cut(s) 210, 366, 637
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 218, 487, 517
Cfr42I CCGCGG 1 cut(s) 585
CseI GACGC 2 cut(s) 463, 568
Csp6I GTAC 5 cut(s) 13, 109, 234, 506, 658
CviAII CATG 5 cut(s) 204, 563, 655, 733, 765
CviQI GTAC 5 cut(s) 13, 109, 234, 506, 658
DdeI CTNAG 3 cut(s) 174, 638, 737
DinI GGCGCC 1 cut(s) 209
DpnI GATC 2 cut(s) 725, 863
DpnII GATC 2 cut(s) 723, 861
DraI TTTAAA 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 218, 517
Eco57I CTGAAG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 669
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 5 cut(s) 207, 566, 658, 736, 768
FaqI GGGAC 2 cut(s) 151, 401
FatI CATG 5 cut(s) 203, 562, 654, 732, 764
FauI CCCGC 3 cut(s) 369, 734, 761
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 7 cut(s) 155, 367, 552, 582, 585, 630, 633
FokI GGATG 4 cut(s) 307, 686, 707, 785
Fsp4HI GCNGC 7 cut(s) 155, 367, 552, 582, 585, 630, 633
FspBI CTAG 1 cut(s) 578
GlaI GCGC 3 cut(s) 209, 365, 636
GluI GCNGC 7 cut(s) 155, 367, 552, 582, 585, 630, 633
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 5 cut(s) 77, 488, 587, 678, 833
HapII CCGG 2 cut(s) 158, 185
HgaI GACGC 2 cut(s) 463, 568
HhaI GCGC 3 cut(s) 210, 366, 637
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 5 cut(s) 207, 566, 658, 736, 768
Hin6I GCGC 3 cut(s) 208, 364, 635
HinP1I GCGC 3 cut(s) 208, 364, 635
HindIII AAGCTT 1 cut(s) 818
HpaII CCGG 2 cut(s) 158, 185
HphI GGTGA 5 cut(s) 18, 123, 300, 674, 760
Hpy188I TCNGA 3 cut(s) 93, 343, 684
Hpy188III TCNNGA 2 cut(s) 269, 703
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 7 cut(s) 153, 264, 315, 321, 348, 689, 776
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4V TGCA 7 cut(s) 71, 84, 239, 447, 648, 689, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 695, 738
HpyF3I CTNAG 3 cut(s) 174, 638, 737
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 5 cut(s) 207, 566, 658, 736, 768
HspAI GCGC 3 cut(s) 208, 364, 635
KasI GGCGCC 1 cut(s) 207
KpnI GGTACC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 861
KspI CCGCGG 1 cut(s) 585
Kzo9I GATC 2 cut(s) 723, 861
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 166, 378, 563, 619
LweI GCATC 4 cut(s) 248, 655, 685, 745
MaeI CTAG 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 710, 748
MalI GATC 2 cut(s) 725, 863
MboI GATC 2 cut(s) 723, 861
MboII GAAGA 5 cut(s) 40, 187, 192, 249, 320
MfeI CAATTG 1 cut(s) 838
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 6 cut(s) 94, 136, 191, 292, 790, 838
MluNI TGGCCA 1 cut(s) 833
Mly113I GGCGCC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 460
Mox20I TGGCCA 1 cut(s) 833
MroNI GCCGGC 1 cut(s) 157
MscI TGGCCA 1 cut(s) 833
MseI TTAA 2 cut(s) 98, 104
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 3 cut(s) 584, 632, 741
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 158, 185
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 838
MvnI CGCG 2 cut(s) 364, 584
MwoI GCNNNNNNNGC 3 cut(s) 366, 695, 738
NaeI GCCGGC 1 cut(s) 159
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 723, 861
NgoMIV GCCGGC 1 cut(s) 157
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 5 cut(s) 207, 566, 658, 736, 768
NlaIV GGNNCC 5 cut(s) 6, 110, 209, 489, 519
NmuCI GTSAC 2 cut(s) 710, 748
NspI RCATGY 4 cut(s) 566, 658, 736, 768
PaeI GCATGC 2 cut(s) 566, 736
PciI ACATGT 1 cut(s) 654
PdiI GCCGGC 1 cut(s) 159
PkrI GCNGC 7 cut(s) 156, 368, 553, 583, 586, 631, 634
PluTI GGCGCC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 218
PscI ACATGT 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 427
PspN4I GGNNCC 5 cut(s) 6, 110, 209, 489, 519
PspPI GGNCC 3 cut(s) 218, 487, 517
PspPPI RGGWCCY 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 632
RsaI GTAC 5 cut(s) 14, 110, 235, 507, 659
RsaNI GTAC 5 cut(s) 13, 109, 234, 506, 658
SacII CCGCGG 1 cut(s) 585
SaqAI TTAA 2 cut(s) 98, 104
SatI GCNGC 7 cut(s) 155, 367, 552, 582, 585, 630, 633
Sau3AI GATC 2 cut(s) 723, 861
Sau96I GGNCC 3 cut(s) 218, 487, 517
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 4 cut(s) 248, 655, 685, 745
SfcI CTRYAG 1 cut(s) 522
SfoI GGCGCC 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 585
SgrBI CCGCGG 1 cut(s) 585
SinI GGWCC 2 cut(s) 218, 517
SmlI CTYRAG 2 cut(s) 103, 533
SmoI CTYRAG 2 cut(s) 103, 533
SphI GCATGC 2 cut(s) 566, 736
Sse9I AATT 6 cut(s) 94, 136, 191, 292, 790, 838
SsiI CCGC 6 cut(s) 362, 582, 584, 630, 741, 768
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 1 cut(s) 662
TasI AATT 6 cut(s) 94, 136, 191, 292, 790, 838
TauI GCSGC 3 cut(s) 584, 587, 632
Tru1I TTAA 2 cut(s) 98, 104
Tru9I TTAA 2 cut(s) 98, 104
TscAI CASTG 2 cut(s) 460, 646
TseFI GTSAC 2 cut(s) 710, 748
TseI GCWGC 4 cut(s) 154, 366, 551, 632
Tsp45I GTSAC 2 cut(s) 710, 748
TspDTI ATGAA 3 cut(s) 192, 396, 620
TspRI CASTG 2 cut(s) 460, 646
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 218, 517
XapI RAATTY 3 cut(s) 94, 136, 790
XceI RCATGY 4 cut(s) 566, 658, 736, 768
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.