Rorug04G0199400

pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015910
Physical Location & Seq
Forward (+)
34732957 .. 34734034
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0199400.1

Sequence Viewer

Length: 327 bp
ATGGTGTCTCTGCAATCTTGCTTCGTTCTACTACTTCTTTGCCTTTCCTATCTCAGCGCAACTGCCTCACCACCATCATCATCAACATGCAATGGTTCCGTAGCAGAGTGTGAAACAGAAAGCGAGCTGCTGATGGATTCCGAAATAAGCAGAAGGTTTCTCGCACAGAAGTATATCTCACCGGGGGCTTTGAGGAAAGACCTACCAGTCTGCAACGGCGGTGCTAGTGGCGAAGCTTACAGTAAAACAGGAGGCTGTCTTCCTCCTCCGGCTAACCCTTATAACAGAGGTTGCTCTAAATACTATCGGTGTAGATCCGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

108

Amino Acids

11.53

Weight (kDa)

7.47

Isoelectric Point (pI)

74.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RALF PF05498 42 - 105 2.9e-24 Rapid ALkalinization Factor (RALF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G36659
fragaria_vesca FvH4_4g19570
malus_domestica MD16G1155100.v1.1
prunus_persica Prupe.1G118800_v2.0.a1
pyrus_communis pycom13g13250
rosa_chinensis RchiOBHm_Chr4g0424831
rosa_laevigata RLG00000007417
rosa_multiflora Rmu_sc0003608.1_g000023
rosa_roxburghii Rroxscaffold_5G00367050
rosa_rugosa Rorug04G0199400
rosa_samantha Rh4AG257200 Rh4BG262500 Rh4CG273500 Rh4DG258300
rosa_wichuraiana Rw4G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AasI GACNNNNNNGTC 1 cut(s) 206
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 309
AluBI AGCT 2 cut(s) 127, 236
AluI AGCT 2 cut(s) 127, 236
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 60, 171
BauI CACGAG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 82, 127
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 182, 269
BsmAI GTCTC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 59
CviAII CATG 1 cut(s) 87
CviJI RGCY 5 cut(s) 127, 188, 236, 255, 272
CviKI_1 RGCY 5 cut(s) 127, 188, 236, 255, 272
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 88, 174, 282
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 128
HapII CCGG 2 cut(s) 182, 269
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 137, 320
HpaII CCGG 2 cut(s) 182, 269
HphI GGTGA 2 cut(s) 60, 171
Hpy188I TCNGA 2 cut(s) 142, 319
Hpy188III TCNNGA 1 cut(s) 324
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 13, 90, 213
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 4 cut(s) 195, 219, 234, 282
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 1 cut(s) 225
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 314
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 6 cut(s) 76, 186, 245, 273, 276, 281
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 2 cut(s) 182, 269
MspR9I CCNGG 1 cut(s) 183
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 97
NspI RCATGY 1 cut(s) 90
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 85
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 314
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 183
SetI ASST 5 cut(s) 129, 158, 204, 238, 292
SmiMI CAYNNNNRTG 1 cut(s) 85
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 242
TfiI GAWTC 1 cut(s) 137
TseI GCWGC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 90
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.