AT3G42050

Vacuolar ATP synthase subunit H family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
14228495 .. 14233441
4947 bp
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UTR
Exon/CDS
Intron
AT3G42050.1

Sequence Viewer

Length: 1326 bp
ATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTTCAGCTAAAGGTCTCCAGCTCTTAAGGCGCTATGATAAAAAACCTGAAAGTGCTAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCATCTCTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTCGAATATGTTTTGGCTTTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATCTTTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTTTGGAAGGGAAATTGGTTCATTCAAGAAAAAAGCTGTAAGATCCTTGCCTGGATAATAAGTGCTAGGCCAAAAGCTGGTAATGCTGTTATTGGTAATGGAATTGATGATGTTCTCAAGGGGTTGGTGGAATGGCTTTGTGCTCAGTTGAAGCAACCTTCTCATCCTACTCGTGGTGTTCCAATTGCAATCAGCTGCCTGTCGTCACTGCTTAAGGAACCTGTTGTCAGATCGTCATTTGTTCAGGCAGATGGGGTGAAGTTACTTGTCCCTTTAATTTCCCCAGCATCCACTCAGCAGTCTATCCAGCTTCTGTATGAAACATGTCTCTGCATCTGGCTTCTGTCCTATTATGAACCTGCAATAGAGTACTTGGCAACATCGAGGACAATGCAAAGGCTCACGGAAGTGGTTAAGCACTCGACTAAGGAAAAGGTTGTCAGGGTGGTCATATTGACATTCAGGAACCTTCTTCCAAAAGGTACATTTGGTGCCCAGATGGTTGATCTTGGACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATCAAGAAATTGAGTTCCTTTGATAAATATAAGCAAGAGGTGCTCCTTGGCCATCTTGACTGGAACCCAATGCACAAGGAGACCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCATTGGCGGTGGCATGCTTTGATATCTCACAGTTCATACAATACCATGCAGCGGGGAGAGTGATTGTAGCAGACCTCAAGGCAAAAGAGCGAGTGATGAAGCTGATAAACCACGAGAACGCTGAGGTGACCAAGAACGCTATCTTGTGCATTCAGAGGCTTCTCCTGGGTGCCAAGTACGCTAGCTTCTTGCAAGCTTGA

Protein Analysis

441

Amino Acids

50.28

Weight (kDa)

6.58

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_H_N PF03224 4 - 312 1e-91 V-ATPase subunit H
V-ATPase_H_C PF11698 318 - 431 8.5e-40 V-ATPase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 19, 703
AccB1I GGYRCC 2 cut(s) 827, 1295
AccB7I CCANNNNNTGG 2 cut(s) 413, 1035
AciI CCGC 3 cut(s) 11, 1133, 1178
AclWI GGATC 3 cut(s) 12, 373, 1112
AcoI YGGCCR 1 cut(s) 994
AfaI GTAC 3 cut(s) 707, 820, 1304
AfiI CCNNNNNNNGG 4 cut(s) 413, 509, 1035, 1177
AflII CTTAAG 2 cut(s) 103, 548
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 4 cut(s) 37, 208, 362, 487
AjnI CCWGG 3 cut(s) 386, 1101, 1290
AleI CACNNNNGTG 1 cut(s) 743
Alw21I GWGCWC 3 cut(s) 277, 481, 990
Alw26I GTCTC 4 cut(s) 50, 98, 668, 1019
AlwI GGATC 3 cut(s) 12, 373, 1112
AlwNI CAGNNNCTG 1 cut(s) 649
AoxI GGCC 2 cut(s) 404, 994
ApeKI GCWGC 2 cut(s) 531, 1175
Asp700I GAANNNNTTC 1 cut(s) 1070
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 161, 1087
AsuHPI GGTGA 2 cut(s) 604, 1264
AsuNHI GCTAGC 1 cut(s) 1307
AvaII GGWCC 2 cut(s) 161, 1087
BaeGI GKGCMC 2 cut(s) 142, 832
BalI TGGCCA 1 cut(s) 996
BanI GGYRCC 2 cut(s) 827, 1295
BanII GRGCYC 1 cut(s) 277
BarI GAAGNNNNNNTAC 1 cut(s) 1295
BauI CACGAG 3 cut(s) 270, 507, 1238
Bbv12I GWGCWC 3 cut(s) 277, 481, 990
BbvCI CCTCAGC 1 cut(s) 1248
BbvI GCAGC 2 cut(s) 518, 1187
BccI CCATC 4 cut(s) 152, 581, 829, 1005
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 3 cut(s) 388, 1103, 1292
BciVI GTATCC 1 cut(s) 304
BcoDI GTCTC 4 cut(s) 50, 98, 668, 1019
BfaI CTAG 4 cut(s) 135, 402, 923, 1308
BfoI RGCGCY 1 cut(s) 112
BfrI CTTAAG 2 cut(s) 103, 548
BfuAI ACCTGC 2 cut(s) 19, 703
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 2 cut(s) 532, 1176
BlsI GCNGC 2 cut(s) 533, 1177
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 3 cut(s) 388, 1103, 1292
Bme18I GGWCC 2 cut(s) 161, 1087
BmgT120I GGNCC 2 cut(s) 161, 1087
BmiI GGNNCC 6 cut(s) 555, 803, 829, 1010, 1088, 1297
BmrFI CCNGG 3 cut(s) 388, 1103, 1292
BmsI GCATC 4 cut(s) 198, 632, 678, 898
BmtI GCTAGC 1 cut(s) 1311
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 1248
BpuEI CTTGAG 4 cut(s) 349, 437, 1096, 1187
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 2 cut(s) 98, 1019
BsaJI CCNNGG 3 cut(s) 50, 991, 1291
Bsc4I CCNNNNNNNGG 4 cut(s) 413, 509, 1035, 1177
Bse1I ACTGG 1 cut(s) 1010
BseBI CCWGG 3 cut(s) 388, 1103, 1292
BseDI CCNNGG 3 cut(s) 50, 991, 1291
BseGI GGATG 3 cut(s) 499, 623, 913
BseLI CCNNNNNNNGG 4 cut(s) 413, 509, 1035, 1177
BseMII CTCAG 6 cut(s) 8, 270, 494, 644, 1096, 1239
BseNI ACTGG 1 cut(s) 1010
BseRI GAGGAG 2 cut(s) 1076, 1082
BseSI GKGCMC 2 cut(s) 142, 832
BseXI GCAGC 2 cut(s) 518, 1187
BseYI CCCAGC 1 cut(s) 619
BshFI GGCC 2 cut(s) 406, 996
BshNI GGYRCC 2 cut(s) 827, 1295
BsiHKAI GWGCWC 3 cut(s) 277, 481, 990
BslFI GGGAC 2 cut(s) 56, 590
BslI CCNNNNNNNGG 4 cut(s) 413, 509, 1035, 1177
BsmAI GTCTC 4 cut(s) 50, 98, 668, 1019
BsmFI GGGAC 2 cut(s) 56, 590
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 2 cut(s) 406, 996
Bso31I GGTCTC 2 cut(s) 98, 1019
Bsp1286I GDGCHC 5 cut(s) 142, 277, 481, 832, 990
Bsp143I GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 3 cut(s) 11, 1133, 1178
BspANI GGCC 2 cut(s) 406, 996
BspCNI CTCAG 6 cut(s) 9, 269, 493, 643, 1095, 1240
BspLI GGNNCC 6 cut(s) 555, 803, 829, 1010, 1088, 1297
BspMI ACCTGC 2 cut(s) 19, 703
BspOI GCTAGC 1 cut(s) 1311
BspPI GGATC 3 cut(s) 12, 373, 1112
BspT107I GGYRCC 2 cut(s) 827, 1295
BspTI CTTAAG 2 cut(s) 103, 548
BspTNI GGTCTC 2 cut(s) 98, 1019
BsrI ACTGG 1 cut(s) 1010
BssECI CCNNGG 3 cut(s) 50, 991, 1291
BssMI GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
BssSI CACGAG 3 cut(s) 270, 507, 1238
BssT1I CCWWGG 2 cut(s) 50, 991
Bst2BI CACGAG 3 cut(s) 270, 507, 1238
Bst2UI CCWGG 3 cut(s) 388, 1103, 1292
Bst4CI ACNGT 4 cut(s) 144, 220, 869, 1158
BstAFI CTTAAG 2 cut(s) 103, 548
BstAPI GCANNNNNTGC 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 1141, 1309, 1320
BstDEI CTNAG 8 cut(s) 17, 72, 256, 480, 630, 762, 1082, 1248
BstDSI CCRYGG 1 cut(s) 50
BstEII GGTNACC 1 cut(s) 1252
BstF5I GGATG 3 cut(s) 499, 623, 913
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 7 cut(s) 7, 381, 569, 844, 948, 1120, 1127
BstMAI GTCTC 4 cut(s) 50, 98, 668, 1019
BstMBI GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
BstMWI GCNNNNNNNGC 4 cut(s) 106, 419, 985, 1304
BstNI CCWGG 3 cut(s) 388, 1103, 1292
BstNSI RCATGY 3 cut(s) 663, 1056, 1143
BstPI GGTNACC 1 cut(s) 1252
BstSCI CCNGG 3 cut(s) 386, 1101, 1290
BstSLI GKGCMC 2 cut(s) 142, 832
BstV1I GCAGC 2 cut(s) 518, 1187
BstX2I RGATCY 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 378
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 406, 996
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 3 cut(s) 499, 623, 913
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 542, 911
BveI ACCTGC 2 cut(s) 19, 703
Cac8I GCNNGC 3 cut(s) 1141, 1309, 1320
CaiI CAGNNNCTG 1 cut(s) 649
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 161, 1087
Csp6I GTAC 3 cut(s) 706, 819, 1303
CviAII CATG 8 cut(s) 51, 64, 287, 660, 885, 1053, 1140, 1172
CviQI GTAC 3 cut(s) 706, 819, 1303
DdeI CTNAG 8 cut(s) 17, 72, 256, 480, 630, 762, 1082, 1248
DpnI GATC 7 cut(s) 6, 380, 568, 843, 947, 1119, 1126
DpnII GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
EaeI YGGCCR 1 cut(s) 994
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 50, 991
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 2 cut(s) 98, 1019
Eco32I GATATC 1 cut(s) 1150
Eco47I GGWCC 2 cut(s) 161, 1087
Eco53kI GAGCTC 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 1252
EcoICRI GAGCTC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 1087
EcoO65I GGTNACC 1 cut(s) 1252
EcoRII CCWGG 3 cut(s) 386, 1101, 1290
EcoRV GATATC 1 cut(s) 1150
EcoT14I CCWWGG 2 cut(s) 50, 991
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 50, 991
FaeI CATG 8 cut(s) 54, 67, 290, 663, 888, 1056, 1143, 1175
FaqI GGGAC 2 cut(s) 56, 590
FatI CATG 8 cut(s) 50, 63, 286, 659, 884, 1052, 1139, 1171
FauI CCCGC 1 cut(s) 1171
Fnu4HI GCNGC 2 cut(s) 532, 1176
FokI GGATG 3 cut(s) 486, 610, 920
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 532, 1176
FspBI CTAG 4 cut(s) 135, 402, 923, 1308
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 532, 1176
GsaI CCCAGC 1 cut(s) 623
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 406, 996
HhaI GCGC 1 cut(s) 111
Hin1II CATG 8 cut(s) 54, 67, 290, 663, 888, 1056, 1143, 1175
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 1320
HinfI GANTC 2 cut(s) 293, 849
HphI GGTGA 2 cut(s) 604, 1264
Hpy188I TCNGA 2 cut(s) 566, 1281
Hpy188III TCNNGA 6 cut(s) 328, 362, 799, 949, 1001, 1075
HpyAV CCTTC 4 cut(s) 337, 504, 815, 923
HpyCH4III ACNGT 4 cut(s) 144, 220, 869, 1158
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 9 cut(s) 524, 669, 698, 730, 911, 1018, 1175, 1275, 1318
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 419, 985, 1304
HpyF3I CTNAG 8 cut(s) 17, 72, 256, 480, 630, 762, 1082, 1248
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 8 cut(s) 54, 67, 290, 663, 888, 1056, 1143, 1175
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
LmnI GCTCC 2 cut(s) 13, 993
Lsp1109I GCAGC 2 cut(s) 518, 1187
LweI GCATC 4 cut(s) 198, 632, 678, 898
MaeI CTAG 4 cut(s) 135, 402, 923, 1308
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 5 cut(s) 540, 597, 890, 1048, 1252
MalI GATC 7 cut(s) 6, 380, 568, 843, 947, 1119, 1126
MboI GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
MboII GAAGA 4 cut(s) 167, 224, 800, 938
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 5 cut(s) 142, 277, 481, 832, 990
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 6 cut(s) 349, 438, 519, 612, 953, 1030
MluNI TGGCCA 1 cut(s) 996
MlyI GAGTC 1 cut(s) 843
Mox20I TGGCCA 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 1070
MscI TGGCCA 1 cut(s) 996
MseI TTAA 4 cut(s) 104, 549, 611, 750
MslI CAYNNNNRTG 2 cut(s) 743, 883
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 2 cut(s) 531, 1178
MspCI CTTAAG 2 cut(s) 103, 548
MspR9I CCNGG 3 cut(s) 388, 1103, 1292
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 3 cut(s) 388, 1103, 1292
MwoI GCNNNNNNNGC 4 cut(s) 106, 419, 985, 1304
NcoI CCATGG 1 cut(s) 50
NdeII GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
NheI GCTAGC 1 cut(s) 1307
NlaIII CATG 8 cut(s) 54, 67, 290, 663, 888, 1056, 1143, 1175
NlaIV GGNNCC 6 cut(s) 555, 803, 829, 1010, 1088, 1297
NmuCI GTSAC 4 cut(s) 540, 890, 1048, 1252
NspI RCATGY 3 cut(s) 663, 1056, 1143
OliI CACNNNNGTG 1 cut(s) 743
PaeI GCATGC 1 cut(s) 1143
PciI ACATGT 1 cut(s) 659
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 1070
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 413, 1035
PfoI TCCNGGA 1 cut(s) 1101
PkrI GCNGC 2 cut(s) 533, 1177
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 1087
PscI ACATGT 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 3 cut(s) 386, 1101, 1290
PspEI GGTNACC 1 cut(s) 1252
PspFI CCCAGC 1 cut(s) 619
PspGI CCWGG 3 cut(s) 386, 1101, 1290
PspN4I GGNNCC 6 cut(s) 555, 803, 829, 1010, 1088, 1297
PspPI GGNCC 2 cut(s) 161, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 649
PsuI RGATCY 1 cut(s) 378
PvuII CAGCTG 1 cut(s) 531
RsaI GTAC 3 cut(s) 707, 820, 1304
RsaNI GTAC 3 cut(s) 706, 819, 1303
RseI CAYNNNNRTG 2 cut(s) 743, 883
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 4 cut(s) 104, 549, 611, 750
SatI GCNGC 2 cut(s) 532, 1176
Sau3AI GATC 7 cut(s) 4, 378, 566, 841, 945, 1117, 1124
Sau96I GGNCC 2 cut(s) 161, 1087
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 843
ScrFI CCNGG 3 cut(s) 388, 1103, 1292
SduI GDGCHC 5 cut(s) 142, 277, 481, 832, 990
SfaNI GCATC 4 cut(s) 198, 632, 678, 898
SinI GGWCC 2 cut(s) 161, 1087
SmiMI CAYNNNNRTG 2 cut(s) 743, 883
SmlI CTYRAG 6 cut(s) 103, 328, 452, 548, 1111, 1202
SmoI CTYRAG 6 cut(s) 103, 328, 452, 548, 1111, 1202
SphI GCATGC 1 cut(s) 1143
Sse9I AATT 6 cut(s) 349, 438, 519, 612, 953, 1030
SsiI CCGC 3 cut(s) 11, 1133, 1178
SspMI CTAG 4 cut(s) 135, 402, 923, 1308
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 3 cut(s) 386, 1101, 1290
StyI CCWWGG 2 cut(s) 50, 991
TaaI ACNGT 4 cut(s) 144, 220, 869, 1158
TaiI ACGT 1 cut(s) 199
TaqI TCGA 5 cut(s) 150, 222, 277, 719, 758
TasI AATT 6 cut(s) 349, 438, 519, 612, 953, 1030
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 4 cut(s) 104, 549, 611, 750
Tru9I TTAA 4 cut(s) 104, 549, 611, 750
TscAI CASTG 2 cut(s) 549, 918
TseFI GTSAC 4 cut(s) 540, 890, 1048, 1252
TseI GCWGC 2 cut(s) 531, 1175
Tsp45I GTSAC 4 cut(s) 540, 890, 1048, 1252
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 2 cut(s) 549, 918
Van91I CCANNNNNTGG 2 cut(s) 413, 1035
Vha464I CTTAAG 2 cut(s) 103, 548
VpaK11BI GGWCC 2 cut(s) 161, 1087
XceI RCATGY 3 cut(s) 663, 1056, 1143
XmnI GAANNNNTTC 1 cut(s) 1070
XspI CTAG 4 cut(s) 135, 402, 923, 1308
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.