Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007974

Physical Location & Seq

Genomic Coordinates Reverse (-)

66625967 .. 66629509

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG464300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCATGCTGAGCTCACCACTGAGCAGGTTTTGAAAAGAGACATCCCATGGGAGCAATACATGACCACTAAGCTCATCACTGGAACCTGCCTTCAGCTCTTACGCCGTTATGACAAAAGATCCGAGACTTACAGATCACAGTTGCTTGATGATCTGAAGAAGCCCTCCCATCCTAGTCGTGGCATCCCAACTGCCATCAATTGCCTTGCAACCTTACTAAAGGAACCTGTGGTTAGATCTTCTTTTGTTCAAGCAGATGGGGTGAAGTTACTTGTTCCATTAATTTCTCCGGCTTCCACCCAACAATCTATGCAGCTTCTGTATGAAACATGTCTATGTGTCTGGCTCCTATCCTATTATGAACCTGCAATTGAGTACCTGGCTACTTCTAGAACACTTCCCCGACTCATAGAAGTTATCAGGAGTTCGACAAAGGAGAAGGTTGTCAGAGTTGTTGTTCTGACCCTGAGGAACTTGCTTTCCAAAGGGACATTTGGTGCTCAAATGGTGGACCTTGGACTGCCTCAAATTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGATCTCCTGGAGGGATTAAATCAATTGGAAGAGGGTTTGAAGGATAACATCAAGAAATTAAGTTCTTTTGATAAATATAAGCAAGAAGTCCTCCTTGGCCATCTTGACTGGTCACCCATGCACAAAGATGCAATATTCTGGCGTGACAATATTACCAACTTTGAGGAGAACGACTTTCAGATTCTAAGAGTGCTAATTACTATTTTGGACACAACCAGTGATCCGAGGGCTTTGGCTGTTGCTTGCTTTGATATCTCACAGTTCGTCCAGCACCATCCGGCTGGAAGAATCATAGTAACTGACCTCAAGGCCAAGGAGCGTGTCATGAAACTGATGAATCATGAGAGTGCTGAGGTTACCAAAAATGCCCTGCTATGCATTCAGAGGCTTTTCCTAGGTGCCAAGTATGCAAGTTTTTTGCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04150 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04150 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

V-ATPase_H_C V-ATPase_H_N

Protein Analysis

332

Amino Acids

37.85

Weight (kDa)

7.62

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_H_N	PF03224	3 - 52	6.1e-07	V-ATPase subunit H
V-ATPase_H_N	PF03224	59 - 203	2.3e-45	V-ATPase subunit H
V-ATPase_H_C	PF11698	209 - 321	1.1e-40	V-ATPase subunit H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42050
fragaria_vesca	FvH4_5g39390 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170
malus_domestica	MD01G1238500.v1.1 MD07G1310400.v1.1
prunus_persica	Prupe.2G328400_v2.0.a1 Prupe.2G328400_v2.0.a1
pyrus_communis	pycom01g24610 pycom07g28260
rosa_chinensis	RchiOBHm_Chr1g0384521
rosa_laevigata	RLG00000026035
rosa_multiflora	Rmu_co8438647.1_g000001 Rmu_sc0006005.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276630
rosa_rugosa	Rorug01G0448500 Rorug01G0448600
rosa_samantha	Rh1AG473700 Rh1BG431800 Rh1CG444900 Rh1DG464300
rosa_wichuraiana	Rw1G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	19, 98, 376
AccB1I	GGYRCC	1 cut(s)	968
AclWI	GGATC	3 cut(s)	117, 579, 785
AcoI	YGGCCR	1 cut(s)	667
AcuI	CTGAAG	2 cut(s)	80, 179
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	37, 254, 547, 610
AjnI	CCWGG	2 cut(s)	381, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	4 cut(s)	16, 76, 100, 319
AluI	AGCT	4 cut(s)	16, 76, 100, 319
Alw21I	GWGCWC	2 cut(s)	18, 505
Alw26I	GTCTC	2 cut(s)	36, 122
AlwI	GGATC	3 cut(s)	117, 579, 785
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	667, 879, 993
ApeKI	GCWGC	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	284
AspA2I	CCTAGG	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	4, 514
AsuHPI	GGTGA	3 cut(s)	10, 277, 675
AvaII	GGWCC	2 cut(s)	4, 514
AvrII	CCTAGG	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	470
BalI	TGGCCA	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 505
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	5 cut(s)	180, 206, 254, 678, 852
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	383, 578
BcoDI	GTCTC	2 cut(s)	36, 122
BfaI	CTAG	3 cut(s)	177, 393, 965
BfuAI	ACCTGC	3 cut(s)	19, 98, 376
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	1 cut(s)	317
BlnI	CCTAGG	1 cut(s)	964
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	383, 578
Bme18I	GGWCC	2 cut(s)	4, 514
BmgT120I	GGNCC	2 cut(s)	4, 514
BmiI	GGNNCC	4 cut(s)	88, 228, 350, 970
BmrFI	CCNGG	2 cut(s)	383, 578
BmsI	GCATC	2 cut(s)	195, 688
BpmI	CTGGAG	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	6 cut(s)	50, 517, 664, 794, 882, 964
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	88, 683, 786
Bse21I	CCTNAGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	383, 578
BseDI	CCNNGG	6 cut(s)	50, 517, 664, 794, 882, 964
BseGI	GGATG	4 cut(s)	45, 172, 186, 844
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	15, 461, 912
BseNI	ACTGG	3 cut(s)	88, 683, 786
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	3 cut(s)	669, 881, 995
BshNI	GGYRCC	1 cut(s)	968
BsiHKAI	GWGCWC	2 cut(s)	18, 505
BsiSI	CCGG	2 cut(s)	293, 848
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	36, 122
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	3 cut(s)	669, 881, 995
Bsp1286I	GDGCHC	2 cut(s)	18, 505
Bsp143I	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	50
BspANI	GGCC	3 cut(s)	669, 881, 995
BspCNI	CTCAG	4 cut(s)	4, 16, 462, 913
BspHI	TCATGA	2 cut(s)	894, 910
BspLI	GGNNCC	4 cut(s)	88, 228, 350, 970
BspMI	ACCTGC	3 cut(s)	19, 98, 376
BspPI	GGATC	3 cut(s)	117, 579, 785
BspT107I	GGYRCC	1 cut(s)	968
BsrI	ACTGG	3 cut(s)	88, 683, 786
BssECI	CCNNGG	6 cut(s)	50, 517, 664, 794, 882, 964
BssMI	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
BssT1I	CCWWGG	5 cut(s)	50, 517, 664, 882, 964
Bst2UI	CCWGG	2 cut(s)	383, 578
Bst4CI	ACNGT	2 cut(s)	144, 831
Bst6I	CTCTTC	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	814, 993
BstDEI	CTNAG	6 cut(s)	12, 24, 72, 470, 755, 921
BstDSI	CCRYGG	1 cut(s)	50
BstEII	GGTNACC	2 cut(s)	681, 925
BstF5I	GGATG	4 cut(s)	45, 172, 186, 844
BstKTI	GATC	6 cut(s)	125, 140, 157, 242, 574, 793
BstMAI	GTCTC	2 cut(s)	36, 122
BstMBI	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	977
BstNI	CCWGG	2 cut(s)	383, 578
BstNSI	RCATGY	1 cut(s)	336
BstPI	GGTNACC	2 cut(s)	681, 925
BstSCI	CCNGG	2 cut(s)	381, 576
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	3 cut(s)	122, 239, 571
BstXI	CCANNNNNNTGG	1 cut(s)	851
BstYI	RGATCY	3 cut(s)	122, 239, 571
Bsu36I	CCTNAGG	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	669, 881, 995
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	45, 172, 186, 844
BtsIMutI	CAGTG	3 cut(s)	21, 81, 793
BveI	ACCTGC	3 cut(s)	19, 98, 376
Cac8I	GCNNGC	2 cut(s)	814, 993
CaiI	CAGNNNCTG	1 cut(s)	322
CciI	TCATGA	2 cut(s)	894, 910
Cfr13I	GGNCC	2 cut(s)	4, 514
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	8 cut(s)	8, 51, 64, 333, 558, 688, 895, 911
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	6 cut(s)	12, 24, 72, 470, 755, 921
DpnI	GATC	6 cut(s)	124, 139, 156, 241, 573, 792
DpnII	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	5 cut(s)	50, 517, 664, 882, 964
Eco147I	AGGCCT	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	4, 514
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	80, 179
Eco81I	CCTNAGG	1 cut(s)	470
Eco91I	GGTNACC	2 cut(s)	681, 925
EcoICRI	GAGCTC	1 cut(s)	16
EcoO65I	GGTNACC	2 cut(s)	681, 925
EcoRII	CCWGG	2 cut(s)	381, 576
EcoRV	GATATC	1 cut(s)	823
EcoT14I	CCWWGG	5 cut(s)	50, 517, 664, 882, 964
EcoT22I	ATGCAT	1 cut(s)	950
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	5 cut(s)	50, 517, 664, 882, 964
FaeI	CATG	8 cut(s)	11, 54, 67, 336, 561, 691, 898, 914
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	8 cut(s)	7, 50, 63, 332, 557, 687, 894, 910
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	4 cut(s)	32, 159, 173, 831
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	3 cut(s)	177, 393, 965
GluI	GCNGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	669, 881, 995
HapII	CCGG	2 cut(s)	293, 848
Hin1II	CATG	8 cut(s)	11, 54, 67, 336, 561, 691, 898, 914
HinfI	GANTC	4 cut(s)	408, 751, 858, 907
HpaII	CCGG	2 cut(s)	293, 848
HphI	GGTGA	3 cut(s)	10, 277, 675
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	8 cut(s)	127, 159, 452, 465, 540, 750, 795, 954
Hpy188III	TCNNGA	6 cut(s)	393, 424, 622, 674, 895, 911
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	3 cut(s)	104, 436, 604
HpyCH4III	ACNGT	2 cut(s)	144, 831
HpyCH4V	TGCA	8 cut(s)	212, 316, 371, 691, 701, 948, 980, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	977
HpyF3I	CTNAG	6 cut(s)	12, 24, 72, 470, 755, 921
Hsp92II	CATG	8 cut(s)	11, 54, 67, 336, 561, 691, 898, 914
Kzo9I	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
LmnI	GCTCC	3 cut(s)	55, 354, 886
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	195, 688
MaeI	CTAG	3 cut(s)	177, 393, 965
MaeIII	GTNAC	5 cut(s)	270, 681, 713, 865, 925
MalI	GATC	6 cut(s)	124, 139, 156, 241, 573, 792
MboI	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
MboII	GAAGA	4 cut(s)	172, 234, 611, 867
MfeI	CAATTG	3 cut(s)	202, 372, 593
MflI	RGATCY	3 cut(s)	122, 239, 571
MhlI	GDGCHC	2 cut(s)	18, 505
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	7 cut(s)	202, 285, 372, 531, 593, 626, 765
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	950
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	284, 587, 629
MslI	CAYNNNNRTG	4 cut(s)	337, 556, 696, 915
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	2 cut(s)	293, 848
MspR9I	CCNGG	2 cut(s)	383, 578
MunI	CAATTG	3 cut(s)	202, 372, 593
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	383, 578
MwoI	GCNNNNNNNGC	1 cut(s)	977
NcoI	CCATGG	1 cut(s)	50
NdeII	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
NlaIII	CATG	8 cut(s)	11, 54, 67, 336, 561, 691, 898, 914
NlaIV	GGNNCC	4 cut(s)	88, 228, 350, 970
NmuCI	GTSAC	2 cut(s)	681, 713
NsiI	ATGCAT	1 cut(s)	950
NspI	RCATGY	1 cut(s)	336
PagI	TCATGA	2 cut(s)	894, 910
PceI	AGGCCT	1 cut(s)	995
PciI	ACATGT	1 cut(s)	332
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	751, 858, 907
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PscI	ACATGT	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	381, 576
PspEI	GGTNACC	2 cut(s)	681, 925
PspGI	CCWGG	2 cut(s)	381, 576
PspN4I	GGNNCC	4 cut(s)	88, 228, 350, 970
PspPI	GGNCC	2 cut(s)	4, 514
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	122, 239, 571
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	4 cut(s)	337, 556, 696, 915
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	284, 587, 629
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	6 cut(s)	122, 137, 154, 239, 571, 790
Sau96I	GGNCC	2 cut(s)	4, 514
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	383, 578
SduI	GDGCHC	2 cut(s)	18, 505
SfaNI	GCATC	2 cut(s)	195, 688
SinI	GGWCC	2 cut(s)	4, 514
SmiMI	CAYNNNNRTG	4 cut(s)	337, 556, 696, 915
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	7 cut(s)	202, 285, 372, 531, 593, 626, 765
SseBI	AGGCCT	1 cut(s)	995
SspI	AATATT	2 cut(s)	705, 721
SspMI	CTAG	3 cut(s)	177, 393, 965
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	995
StyD4I	CCNGG	2 cut(s)	381, 576
StyI	CCWWGG	5 cut(s)	50, 517, 664, 882, 964
TaaI	ACNGT	2 cut(s)	144, 831
TaqI	TCGA	1 cut(s)	431
TasI	AATT	7 cut(s)	202, 285, 372, 531, 593, 626, 765
TfiI	GAWTC	3 cut(s)	751, 858, 907
Tru1I	TTAA	3 cut(s)	284, 587, 629
Tru9I	TTAA	3 cut(s)	284, 587, 629
TscAI	CASTG	3 cut(s)	28, 88, 793
TseFI	GTSAC	2 cut(s)	681, 713
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	681, 713
TspDTI	ATGAA	4 cut(s)	342, 378, 911, 920
TspRI	CASTG	3 cut(s)	28, 88, 793
VpaK11BI	GGWCC	2 cut(s)	4, 514
VspI	ATTAAT	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	964
XspI	CTAG	3 cut(s)	177, 393, 965
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.