Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007974

Physical Location & Seq

Genomic Coordinates Reverse (-)

54475905 .. 54477222

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATCATGTTTTTGTTGGTGAAAACACAGAAGCAAAACTCTACATTGGTAACCTTGATATGAGAATAACAGAGGCTGCTCTACTCAAGATGTTTTCTCCGTTTGGGAAGATCGTACATGAGGAATTTTTGCTGCATACTCGTGGCCGCAAACGTGGAGAGCCTCGAGGCTTTGCTTTCATCCAGTATAGTAGTGAAGAGGAAGCAAAATTGGCCAAGGAGAAGATGCACGGGAGACTAGCTTGCGGGCGCCCATTAGTCGTCCGTCTTTCCAGCGAAAAATACTCAATACAAGAAACAGAGAACCCTTCCAGACAAGCCGGCAACGCCGCCAAAACAAGCCTTTCGGCCAGCAGTGCAGGACAGATGAGTCGGACCTCCAAAATAGCAGCCATCAAGAACAAACTGAAAGCTCTGGAGGGCGAGGGCTTTAGCGCCAAGAAGCAGAAGCAAGACAACACCTGTTGCAGCAGTAGCCTTGATCATCCATCAGGCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04150 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04150 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

V-ATPase_H_C V-ATPase_H_N

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

9.51

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	14 - 86	5.8e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42050
fragaria_vesca	FvH4_5g39390 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170
malus_domestica	MD01G1238500.v1.1 MD07G1310400.v1.1
prunus_persica	Prupe.2G328400_v2.0.a1 Prupe.2G328400_v2.0.a1
pyrus_communis	pycom01g24610 pycom07g28260
rosa_chinensis	RchiOBHm_Chr1g0384521
rosa_laevigata	RLG00000026035
rosa_multiflora	Rmu_co8438647.1_g000001 Rmu_sc0006005.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276630
rosa_rugosa	Rorug01G0448500 Rorug01G0448600
rosa_samantha	Rh1AG473700 Rh1BG431800 Rh1CG444900 Rh1DG464300
rosa_wichuraiana	Rw1G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	369
AbsI	CCTCGAGG	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	249
AciI	CCGC	3 cut(s)	148, 246, 330
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	145, 213, 348
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	117
AluBI	AGCT	2 cut(s)	242, 413
AluI	AGCT	2 cut(s)	242, 413
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	4 cut(s)	145, 213, 348, 493
ApeKI	GCWGC	4 cut(s)	77, 133, 389, 468
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	252, 437
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	64, 120, 401, 480
BccI	CCATC	2 cut(s)	401, 496
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	2 cut(s)	253, 438
BisI	GCNGC	6 cut(s)	78, 134, 148, 330, 390, 469
BlsI	GCNGC	6 cut(s)	79, 135, 149, 331, 391, 470
Bme18I	GGWCC	1 cut(s)	375
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	251
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	180, 484
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	64, 120, 401, 480
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	147, 215, 350, 495
BshNI	GGYRCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	4 cut(s)	147, 215, 350, 495
BsoBI	CYCGRG	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	4, 111, 481
BspACI	CCGC	3 cut(s)	148, 246, 330
BspANI	GGCC	4 cut(s)	147, 215, 350, 495
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	4, 111, 481
BssNI	GRCGYC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	250
BstC8I	GCNNGC	4 cut(s)	244, 248, 322, 352
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	180, 484
BstH2I	RGCGCY	2 cut(s)	253, 438
BstHHI	GCGC	2 cut(s)	252, 437
BstKTI	GATC	3 cut(s)	7, 114, 484
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	3 cut(s)	4, 111, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 326, 356, 474
BstPI	GGTNACC	1 cut(s)	50
BstV1I	GCAGC	4 cut(s)	64, 120, 401, 480
BsuRI	GGCC	4 cut(s)	147, 215, 350, 495
BtsCI	GGATG	2 cut(s)	180, 484
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	4 cut(s)	244, 248, 322, 352
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	252, 437
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	8, 119
CviQI	GTAC	1 cut(s)	116
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	3 cut(s)	6, 113, 483
DpnII	GATC	3 cut(s)	4, 111, 481
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
EaeI	YGGCCR	3 cut(s)	145, 213, 348
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	216
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	11, 122
FaiI	YATR	5 cut(s)	9, 62, 120, 138, 189
FatI	CATG	2 cut(s)	7, 118
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	6 cut(s)	78, 134, 148, 330, 390, 469
FokI	GGATG	2 cut(s)	167, 471
Fsp4HI	GCNGC	6 cut(s)	78, 134, 148, 330, 390, 469
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	251, 436
GluI	GCNGC	6 cut(s)	78, 134, 148, 330, 390, 469
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	2 cut(s)	253, 438
HaeIII	GGCC	4 cut(s)	147, 215, 350, 495
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	2 cut(s)	252, 437
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	11, 122
Hin6I	GCGC	2 cut(s)	250, 435
HinP1I	GCGC	2 cut(s)	250, 435
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	88, 312, 397, 416
HpyAV	CCTTC	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	136, 229, 359, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 326, 356, 474
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	11, 122
HspAI	GCGC	2 cut(s)	250, 435
KasI	GGCGCC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	4, 111, 481
LpnPI	CCDG	9 cut(s)	197, 286, 325, 334, 345, 364, 401, 475, 477
Lsp1109I	GCAGC	4 cut(s)	64, 120, 401, 480
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	6, 113, 483
MboI	GATC	3 cut(s)	4, 111, 481
MboII	GAAGA	3 cut(s)	121, 209, 235
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	125, 209
MluNI	TGGCCA	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	67, 115, 161, 174, 193, 388, 412, 418
Mox20I	TGGCCA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	212, 326, 356, 474
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	1 cut(s)	250
NdeII	GATC	3 cut(s)	4, 111, 481
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	11, 122
NlaIV	GGNNCC	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	79, 135, 149, 331, 391, 470
PleI	GAGTC	1 cut(s)	378
PluTI	GGCGCC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	141
SatI	GCNGC	6 cut(s)	78, 134, 148, 330, 390, 469
Sau3AI	GATC	3 cut(s)	4, 111, 481
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	379
SetI	ASST	6 cut(s)	57, 157, 244, 380, 415, 464
SfaNI	GCATC	1 cut(s)	216
SfoI	GGCGCC	1 cut(s)	251
Sfr274I	CTCGAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	375
SlaI	CTCGAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	86, 165
SmoI	CTYRAG	2 cut(s)	86, 165
Sse9I	AATT	2 cut(s)	125, 209
SsiI	CCGC	3 cut(s)	148, 246, 330
SspDI	GGCGCC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	125, 209
TauI	GCSGC	2 cut(s)	150, 332
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	4 cut(s)	77, 133, 389, 468
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	2 cut(s)	90, 254
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	165
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.