Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007974

Physical Location & Seq

Genomic Coordinates Forward (+)

29089270 .. 29089788

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGACCATGCTGAGCTCACCACTGAGCAGGTCTTGAAAAGAGACATCCCATGGGAGCAATACATGACTACCAAGCTCATCACTGGCACCTGTCTTCAGCTGTTAGGCCGTTATGATAAAAGATCCGAGACTTACAGATCACAGCTGCTTGATGATGATGGCCCTGCTCATGTTCAAGTGTTTGTTGGCATTTTGCGTGATATTTTCAAGGAAGAGACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04150 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04150 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

V-ATPase_H_C V-ATPase_H_N

Protein Analysis

75

Amino Acids

8.66

Weight (kDa)

4.97

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_H_N	PF03224	3 - 74	8.5e-13	V-ATPase subunit H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42050
fragaria_vesca	FvH4_5g39390 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170
malus_domestica	MD01G1238500.v1.1 MD07G1310400.v1.1
prunus_persica	Prupe.2G328400_v2.0.a1 Prupe.2G328400_v2.0.a1
pyrus_communis	pycom01g24610 pycom07g28260
rosa_chinensis	RchiOBHm_Chr1g0384521
rosa_laevigata	RLG00000026035
rosa_multiflora	Rmu_co8438647.1_g000001 Rmu_sc0006005.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276630
rosa_rugosa	Rorug01G0448500 Rorug01G0448600
rosa_samantha	Rh1AG473700 Rh1BG431800 Rh1CG444900 Rh1DG464300
rosa_wichuraiana	Rw1G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	37, 176, 208
AluBI	AGCT	4 cut(s)	16, 76, 100, 145
AluI	AGCT	4 cut(s)	16, 76, 100, 145
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	36, 122, 209
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	106, 160
ApeKI	GCWGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	4, 161
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	36, 122, 209
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	146
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 161
BmiI	GGNNCC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	2 cut(s)	108, 162
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	18
BsmAI	GTCTC	3 cut(s)	36, 122, 209
BsnI	GGCC	2 cut(s)	108, 162
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	122, 137
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	50
BspANI	GGCC	2 cut(s)	108, 162
BspCNI	CTCAG	2 cut(s)	4, 16
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	122, 137
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	12, 24
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	125, 140
BstMAI	GTCTC	3 cut(s)	36, 122, 209
BstMBI	GATC	2 cut(s)	122, 137
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	108, 162
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	21, 81
BveI	ACCTGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	4, 161
CviAII	CATG	4 cut(s)	8, 51, 64, 170
CviJI	RGCY	6 cut(s)	16, 76, 100, 108, 145, 162
CviKI_1	RGCY	6 cut(s)	16, 76, 100, 108, 145, 162
DdeI	CTNAG	2 cut(s)	12, 24
DpnI	GATC	2 cut(s)	124, 139
DpnII	GATC	2 cut(s)	122, 137
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	4 cut(s)	11, 54, 67, 173
FaiI	YATR	6 cut(s)	9, 52, 65, 114, 171, 223
FatI	CATG	4 cut(s)	7, 50, 63, 169
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	108, 162
Hin1II	CATG	4 cut(s)	11, 54, 67, 173
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	12, 24
Hsp92II	CATG	4 cut(s)	11, 54, 67, 173
Kzo9I	GATC	2 cut(s)	122, 137
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	14, 69, 103, 177
Lsp1109I	GCAGC	1 cut(s)	132
MalI	GATC	2 cut(s)	124, 139
MboI	GATC	2 cut(s)	122, 137
MboII	GAAGA	2 cut(s)	86, 224
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	100, 145
NcoI	CCATGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	122, 137
NlaIII	CATG	4 cut(s)	11, 54, 67, 173
NlaIV	GGNNCC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	4, 161
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	100, 145
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	122, 137
Sau96I	GGNCC	2 cut(s)	4, 161
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	6 cut(s)	18, 33, 78, 92, 102, 147
SinI	GGWCC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	220
TscAI	CASTG	2 cut(s)	28, 88
TseI	GCWGC	1 cut(s)	145
TspRI	CASTG	2 cut(s)	28, 88
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.