Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438647.1

Orthogroup ID

OG0007974

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1549

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ctgaagaagccctcccatcctagtcgtggcatcccaactgccatcaattgccttgcaaccttactaaaggaacctgtggttagatcttcttttgttcaagcagatggggtgaagttacttgttccattaatttctccggcttccacccaacaatctatgcagcttctgtatgaaacatgtctatgtgtctggctcctatcctattatgaacctgcaattgagtacctggctacttctagaacacttccccgactcatagaagttatcaggagttcgacaaaggagaaggttgtcagagttgttgttttgaccctgaggaacttgctttccaaagggacatttggtgctcaaatggtggaccttggactgcctcaaattgttcagagtttgaaagcacaagcatggagtgatgaggatctcctggagggattaaatcaattggaagagggtttgaaggataacatcaagaaattaagttcttttgataaatataagcaagaagtcctccttggccatcttgactggtcacccatgcacaaagatgcaatattctggcgtgacaatattaccaactttgaggagaacgactttcaggtatttttggcctcttcgcgtcataagaaagaaaaattagaattttcactaggcactcttggggtatcactcataggacatgtctttgacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04150 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04150 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

V-ATPase_H_C V-ATPase_H_N

Protein Analysis

229

Amino Acids

25.83

Weight (kDa)

7.13

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42050
fragaria_vesca	FvH4_5g39390 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170 FvH4_7g34170
malus_domestica	MD01G1238500.v1.1 MD07G1310400.v1.1
prunus_persica	Prupe.2G328400_v2.0.a1 Prupe.2G328400_v2.0.a1
pyrus_communis	pycom01g24610 pycom07g28260
rosa_chinensis	RchiOBHm_Chr1g0384521
rosa_laevigata	RLG00000026035
rosa_multiflora	Rmu_co8438647.1_g000001 Rmu_sc0006005.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276630
rosa_rugosa	Rorug01G0448500 Rorug01G0448600
rosa_samantha	Rh1AG473700 Rh1BG431800 Rh1CG444900 Rh1DG464300
rosa_wichuraiana	Rw1G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	1 cut(s)	613
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	2 cut(s)	176, 673
AgsI	TTSAA	3 cut(s)	98, 391, 454
AjnI	CCWGG	2 cut(s)	225, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	511, 603
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	635
AseI	ATTAAT	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	121, 519
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	4 cut(s)	24, 50, 98, 522
BciT130I	CCWGG	2 cut(s)	227, 422
BfaI	CTAG	3 cut(s)	21, 237, 644
BfuAI	ACCTGC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	227, 422
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	72, 194
BmrFI	CCNGG	2 cut(s)	227, 422
BmsI	GCATC	2 cut(s)	39, 532
BpmI	CTGGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	361, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	527
Bse21I	CCTNAGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	227, 422
BseDI	CCNNGG	2 cut(s)	361, 508
BseGI	GGATG	2 cut(s)	16, 30
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	513, 605
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	513, 605
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	83, 415
BspANI	GGCC	2 cut(s)	513, 605
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	72, 194
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	361, 508
BssMI	GATC	2 cut(s)	83, 415
BssT1I	CCWWGG	2 cut(s)	361, 508
Bst2UI	CCWGG	2 cut(s)	227, 422
Bst6I	CTCTTC	2 cut(s)	438, 613
BstDEI	CTNAG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	16, 30
BstFNI	CGCG	1 cut(s)	613
BstKTI	GATC	2 cut(s)	86, 418
BstMBI	GATC	2 cut(s)	83, 415
BstNI	CCWGG	2 cut(s)	227, 422
BstNSI	RCATGY	2 cut(s)	180, 677
BstPI	GGTNACC	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	225, 420
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	2 cut(s)	83, 415
BstYI	RGATCY	2 cut(s)	83, 415
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	513, 605
BtsCI	GGATG	2 cut(s)	16, 30
BveI	ACCTGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	4 cut(s)	177, 402, 532, 674
CviJI	RGCY	7 cut(s)	10, 140, 163, 193, 230, 513, 605
CviKI_1	RGCY	7 cut(s)	10, 140, 163, 193, 230, 513, 605
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	2 cut(s)	85, 417
DpnII	GATC	2 cut(s)	83, 415
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	438, 613
EarI	CTCTTC	2 cut(s)	438, 613
Eco130I	CCWWGG	2 cut(s)	361, 508
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	225, 420
EcoT14I	CCWWGG	2 cut(s)	361, 508
ErhI	CCWWGG	2 cut(s)	361, 508
FaeI	CATG	4 cut(s)	180, 405, 535, 677
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	4 cut(s)	176, 401, 531, 673
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	3, 17
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	3 cut(s)	21, 237, 644
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	513, 605
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	4 cut(s)	180, 405, 535, 677
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	121, 519
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	296, 384
Hpy188III	TCNNGA	4 cut(s)	237, 268, 466, 518
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	2 cut(s)	280, 448
HpyCH4V	TGCA	5 cut(s)	56, 160, 215, 535, 545
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	180, 405, 535, 677
Kzo9I	GATC	2 cut(s)	83, 415
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	39, 532
MaeI	CTAG	3 cut(s)	21, 237, 644
MaeIII	GTNAC	3 cut(s)	114, 525, 557
MalI	GATC	2 cut(s)	85, 417
MboI	GATC	2 cut(s)	83, 415
MboII	GAAGA	4 cut(s)	16, 78, 455, 600
MfeI	CAATTG	4 cut(s)	46, 216, 437, 685
MflI	RGATCY	2 cut(s)	83, 415
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	9 cut(s)	46, 129, 216, 375, 437, 470, 629, 635, 685
MluNI	TGGCCA	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	9 cut(s)	22, 309, 381, 406, 418, 439, 515, 571, 616
Mox20I	TGGCCA	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	3 cut(s)	128, 431, 473
MslI	CAYNNNNRTG	3 cut(s)	181, 400, 540
Msp20I	TGGCCA	1 cut(s)	513
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	227, 422
MunI	CAATTG	4 cut(s)	46, 216, 437, 685
MvaI	CCWGG	2 cut(s)	227, 422
MvnI	CGCG	1 cut(s)	613
NdeII	GATC	2 cut(s)	83, 415
NlaIII	CATG	4 cut(s)	180, 405, 535, 677
NlaIV	GGNNCC	2 cut(s)	72, 194
NmuCI	GTSAC	2 cut(s)	525, 557
NspI	RCATGY	2 cut(s)	180, 677
PciI	ACATGT	2 cut(s)	176, 673
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PscI	ACATGT	2 cut(s)	176, 673
PshBI	ATTAAT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	225, 420
PspEI	GGTNACC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	225, 420
PspN4I	GGNNCC	2 cut(s)	72, 194
PspPI	GGNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	83, 415
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	3 cut(s)	181, 400, 540
SaqAI	TTAA	3 cut(s)	128, 431, 473
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	83, 415
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	227, 422
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	8 cut(s)	62, 76, 165, 214, 228, 291, 363, 597
SfaNI	GCATC	2 cut(s)	39, 532
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	181, 400, 540
Sse9I	AATT	9 cut(s)	46, 129, 216, 375, 437, 470, 629, 635, 685
SspI	AATATT	2 cut(s)	549, 565
SspMI	CTAG	3 cut(s)	21, 237, 644
StyD4I	CCNGG	2 cut(s)	225, 420
StyI	CCWWGG	2 cut(s)	361, 508
TaqI	TCGA	1 cut(s)	275
TasI	AATT	9 cut(s)	46, 129, 216, 375, 437, 470, 629, 635, 685
Tru1I	TTAA	3 cut(s)	128, 431, 473
Tru9I	TTAA	3 cut(s)	128, 431, 473
TseFI	GTSAC	2 cut(s)	525, 557
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	525, 557
TspDTI	ATGAA	2 cut(s)	186, 222
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	2 cut(s)	180, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XspI	CTAG	3 cut(s)	21, 237, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.