Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007853

Physical Location & Seq

Genomic Coordinates Reverse (-)

16226519 .. 16230009

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCGTTCCAAGGACAAAATCTCTTACTTTTATGATGGGGATGTGGGGAGTGTCTATTTTGGTCCGAATCACCCGATGAAACCTCACAGGCTTTGTATGACCCATCATCTTATCCTTGCATATGGCCTGCATAGCAAGATGGAAGTTTATCGTCCACACAAAGCATATCCTATCGAGATGGCTCAGTTCCATTCTCCTGACTATGTAGAGTTCCTGCAACGAATTAATCCAGAAAACCAGAACTTGTTCCCCAATGAAATGGCTAGATATAATCTGGGAGAGGATTGTCCTGTCTTTGAAGATTTGTTTGAATTTTGTCAACTTTACGCCGGCGGAACCATAGATGCTGCACGCAGGTTAAACAACAAACTCTGTGACATTGCTATAAATTGGGCGGGCGGGTTGCACCATGCCAAAAAATGTGATGCATCTGGGTTTTGCTACATCAACGATCTCGTGCTAGGAATTCTTGAGTTGTTAAAACACCATCCCCGTGTTCTATACATAGATATAGATGTTCATCATGGTGATGGGGTTGAAGAAGCGTTTTACTTCACTGACAGAGTAATGACTGTTAGCTTTCATAAGTTTGGGGATAAGTTCTTTCCAGGGACAGGCGATGTTAAGGAAATAGGAGAAAGAGAAGGGAAATTTTACGCCATTAATGTGCCGCTGAAGGATGGTATCGATGACAGTAGTTTCAACCGTCTTTTCAGGACTATAATATCCAAGGTTGTTGAGATATATCAACCGGGTGCAATTGTTCTTCAATGCGGGGCAGATTCACTAGCCAGGGATCGACTAGGATGCTTTAATCTCTCTATTGATGGACATGCTGAATGTGTTAAATTCGTGAAGAAGTTCAATCTTCCCTTACTGGTTACAGGAGGTGGAGGATACACAAAGGAGAATGTAGCTCGTTGTTGGACCGTTGAGACTGGCATTCTTTTGGACACAGAACTTCCTAATGAGATTCCTGAAAACGACTACATAAAGTATTTTGCGCCGGATTTTTCTTTGAAGATACCGGGTGGTCACATTGAGAATCTTAATACCAAATCGTACATCAGTTCCATCAAAGTGCAGATTTTGGAGAATTTGCGATACATTCAACACGCTCCAAGCGTACAAATGCAGGAGGTTCCACCGGATTTCTACATACCGGATTTTGATGAAGACGAACAAAACCCGGATGTACGTGCGGATCAGCGTTCACGGGATAAGCAGATCCAGAGGGATGATGAATATTTCGATGGAGACAACGATAACGATGCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010029 GO:0010187 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0065007 GO:0070932 GO:0071704 GO:0071840 GO:0097159 GO:0098732 GO:1900055 GO:1900140 GO:1901363 GO:1901564 GO:1990619 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

426

Amino Acids

48.69

Weight (kDa)

5.21

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	24 - 313	2.2e-86	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44680
fragaria_vesca	FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 FvH4_5g27310
malus_domestica	MD11G1159400.v1.1
prunus_persica	Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1
pyrus_communis	pycom03g09310 pycom11g13010
rosa_chinensis	RchiOBHm_Chr7g0218461
rosa_laevigata	RLG00000002371
rosa_multiflora	Rmu_sc0001301.1_g000083
rosa_roxburghii	Rroxscaffold_3G00240940
rosa_rugosa	Rorug07G0177300 Rorug07G0177300 Rorug07G0177300
rosa_samantha	Rh7AG318700 Rh7CG335700
rosa_wichuraiana	Rw7G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AciI	CCGC	6 cut(s)	333, 395, 399, 671, 774, 1202
AclWI	GGATC	3 cut(s)	804, 1212, 1222
AcsI	RAATTY	5 cut(s)	311, 465, 650, 848, 1096
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	3 cut(s)	1064, 1128, 1197
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	8 cut(s)	299, 311, 539, 703, 770, 865, 1021, 1112
AjnI	CCWGG	2 cut(s)	607, 791
AluBI	AGCT	2 cut(s)	579, 917
AluI	AGCT	2 cut(s)	579, 917
Alw26I	GTCTC	2 cut(s)	929, 1251
AlwI	GGATC	3 cut(s)	804, 1212, 1222
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	5 cut(s)	311, 465, 650, 848, 1096
AseI	ATTAAT	2 cut(s)	225, 663
Asp700I	GAANNNNTTC	2 cut(s)	245, 860
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	2 cut(s)	62, 927
AsuC2I	CCSGG	3 cut(s)	753, 1029, 1190
AsuHPI	GGTGA	2 cut(s)	62, 539
AvaII	GGWCC	2 cut(s)	62, 927
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	1182
BbvI	GCAGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	3 cut(s)	789, 823, 1253
BciT130I	CCWGG	2 cut(s)	609, 793
BciVI	GTATCC	1 cut(s)	890
BcnI	CCSGG	3 cut(s)	753, 1029, 1190
BcoDI	GTCTC	2 cut(s)	929, 1251
BfaI	CTAG	4 cut(s)	264, 461, 788, 803
BfuAI	ACCTGC	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	890
BisI	GCNGC	2 cut(s)	348, 671
BlsI	GCNGC	2 cut(s)	349, 672
Bme1390I	CCNGG	5 cut(s)	609, 753, 793, 1029, 1190
Bme18I	GGWCC	2 cut(s)	62, 927
BmgT120I	GGNCC	2 cut(s)	62, 927
BmiI	GGNNCC	2 cut(s)	337, 1143
BmrFI	CCNGG	5 cut(s)	609, 753, 793, 1029, 1190
BmsI	GCATC	5 cut(s)	334, 415, 437, 797, 1261
BpiI	GAAGAC	1 cut(s)	1182
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	753, 1029, 1190
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	1199
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	9, 608, 729, 792
BsaWI	WCCGGW	2 cut(s)	1147, 1162
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	882, 943
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	609, 793
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	4 cut(s)	9, 608, 729, 792
BseGI	GGATG	6 cut(s)	46, 487, 685, 812, 1198, 1243
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	882, 943
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	2 cut(s)	333, 1103
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	687
BsiSI	CCGG	7 cut(s)	330, 752, 1007, 1028, 1148, 1163, 1190
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	929, 1251
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	942
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	451, 796, 1204, 1227
BspACI	CCGC	6 cut(s)	333, 395, 399, 671, 774, 1202
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	337, 1143
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	804, 1212, 1222
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	882, 943
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	9, 608, 729, 792
BssMI	GATC	4 cut(s)	451, 796, 1204, 1227
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	9, 729
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	609, 793
Bst4CI	ACNGT	4 cut(s)	574, 695, 707, 931
BstBAI	YACGTR	1 cut(s)	1199
BstC8I	GCNNGC	4 cut(s)	128, 331, 352, 397
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	6 cut(s)	46, 487, 685, 812, 1198, 1243
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	4 cut(s)	454, 799, 1207, 1230
BstMAI	GTCTC	2 cut(s)	929, 1251
BstMBI	GATC	4 cut(s)	451, 796, 1204, 1227
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	609, 793
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	5 cut(s)	607, 751, 791, 1027, 1188
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	1182
BstX2I	RGATCY	1 cut(s)	1227
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	1227
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	890
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	6 cut(s)	46, 487, 685, 812, 1198, 1243
BtsIMutI	CAGTG	1 cut(s)	555
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	4 cut(s)	128, 331, 352, 397
CfoI	GCGC	1 cut(s)	1006
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	62, 927
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	1 cut(s)	1263
Csp6I	GTAC	3 cut(s)	1063, 1127, 1196
CviAII	CATG	3 cut(s)	410, 524, 833
CviJI	RGCY	7 cut(s)	91, 126, 182, 263, 579, 791, 917
CviKI_1	RGCY	7 cut(s)	91, 126, 182, 263, 579, 791, 917
CviQI	GTAC	3 cut(s)	1063, 1127, 1196
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	4 cut(s)	453, 798, 1206, 1229
DpnII	GATC	4 cut(s)	451, 796, 1204, 1227
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	9, 729
Eco47I	GGWCC	2 cut(s)	62, 927
Eco57I	CTGAAG	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	607, 791
EcoT14I	CCWWGG	2 cut(s)	9, 729
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	2 cut(s)	9, 729
FaeI	CATG	3 cut(s)	413, 527, 836
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	3 cut(s)	409, 523, 832
FauI	CCCGC	3 cut(s)	388, 392, 767
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	348, 671
FokI	GGATG	6 cut(s)	53, 474, 692, 819, 1205, 1250
Fsp4HI	GCNGC	2 cut(s)	348, 671
FspBI	CTAG	4 cut(s)	264, 461, 788, 803
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	2 cut(s)	348, 671
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	7 cut(s)	330, 752, 1007, 1028, 1148, 1163, 1190
HgaI	GACGC	1 cut(s)	1263
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	3 cut(s)	413, 527, 836
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	4 cut(s)	67, 782, 973, 1045
HpaII	CCGG	7 cut(s)	330, 752, 1007, 1028, 1148, 1163, 1190
HphI	GGTGA	2 cut(s)	62, 539
Hpy166II	GTNNAC	3 cut(s)	155, 320, 1214
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	8 cut(s)	175, 197, 230, 470, 715, 853, 977, 1231
Hpy8I	GTNNAC	3 cut(s)	155, 320, 1214
HpyAV	CCTTC	2 cut(s)	638, 670
HpyCH4III	ACNGT	4 cut(s)	574, 695, 707, 931
HpyCH4IV	ACGT	1 cut(s)	1198
HpyCH4V	TGCA	9 cut(s)	119, 130, 217, 350, 406, 428, 758, 1084, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	1198
Hsp92II	CATG	3 cut(s)	413, 527, 836
HspAI	GCGC	1 cut(s)	1004
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	451, 796, 1204, 1227
LmnI	GCTCC	1 cut(s)	1123
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	5 cut(s)	334, 415, 437, 797, 1261
MaeI	CTAG	4 cut(s)	264, 461, 788, 803
MaeII	ACGT	1 cut(s)	1198
MaeIII	GTNAC	3 cut(s)	374, 880, 1034
MalI	GATC	4 cut(s)	453, 798, 1206, 1229
MboI	GATC	4 cut(s)	451, 796, 1204, 1227
MboII	GAAGA	7 cut(s)	311, 551, 758, 860, 868, 1033, 1187
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	1227
MluCI	AATT	8 cut(s)	222, 311, 388, 465, 650, 759, 848, 1096
MmeI	TCCRAC	1 cut(s)	905
MnlI	CCTC	6 cut(s)	93, 274, 881, 887, 1132, 1227
Mph1103I	ATGCAT	1 cut(s)	430
MreI	CGCCGGCG	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	2 cut(s)	245, 860
MseI	TTAA	8 cut(s)	225, 359, 479, 624, 663, 813, 846, 1050
MslI	CAYNNNNRTG	5 cut(s)	492, 525, 528, 665, 1079
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	7 cut(s)	330, 752, 1007, 1028, 1148, 1163, 1190
MspR9I	CCNGG	5 cut(s)	609, 753, 793, 1029, 1190
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	942
MvaI	CCWGG	2 cut(s)	609, 793
MwoI	GCNNNNNNNGC	1 cut(s)	132
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	3 cut(s)	753, 1029, 1190
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	4 cut(s)	451, 796, 1204, 1227
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	413, 527, 836
NlaIV	GGNNCC	2 cut(s)	337, 1143
NmuCI	GTSAC	2 cut(s)	374, 1034
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	942
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	2 cut(s)	245, 860
PfeI	GAWTC	4 cut(s)	67, 782, 973, 1045
PkrI	GCNGC	2 cut(s)	349, 672
Ppu21I	YACGTR	1 cut(s)	1199
PshBI	ATTAAT	2 cut(s)	225, 663
Psp6I	CCWGG	2 cut(s)	607, 791
PspGI	CCWGG	2 cut(s)	607, 791
PspN4I	GGNNCC	2 cut(s)	337, 1143
PspPI	GGNCC	2 cut(s)	62, 927
PsuI	RGATCY	1 cut(s)	1227
RsaI	GTAC	3 cut(s)	1064, 1128, 1197
RsaNI	GTAC	3 cut(s)	1063, 1127, 1196
RseI	CAYNNNNRTG	5 cut(s)	492, 525, 528, 665, 1079
SaqAI	TTAA	8 cut(s)	225, 359, 479, 624, 663, 813, 846, 1050
SatI	GCNGC	2 cut(s)	348, 671
Sau3AI	GATC	4 cut(s)	451, 796, 1204, 1227
Sau96I	GGNCC	2 cut(s)	62, 927
ScrFI	CCNGG	5 cut(s)	609, 753, 793, 1029, 1190
SetI	ASST	8 cut(s)	85, 359, 581, 735, 892, 919, 1143, 1201
SfaNI	GCATC	5 cut(s)	334, 415, 437, 797, 1261
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	62, 927
SmiMI	CAYNNNNRTG	5 cut(s)	492, 525, 528, 665, 1079
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	8 cut(s)	222, 311, 388, 465, 650, 759, 848, 1096
SsiI	CCGC	6 cut(s)	333, 395, 399, 671, 774, 1202
SspI	AATATT	1 cut(s)	1247
SspMI	CTAG	4 cut(s)	264, 461, 788, 803
StyD4I	CCNGG	5 cut(s)	607, 751, 791, 1027, 1188
StyI	CCWWGG	2 cut(s)	9, 729
TaaI	ACNGT	4 cut(s)	574, 695, 707, 931
TaiI	ACGT	1 cut(s)	1201
TaqI	TCGA	4 cut(s)	174, 687, 799, 1251
TasI	AATT	8 cut(s)	222, 311, 388, 465, 650, 759, 848, 1096
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	4 cut(s)	67, 782, 973, 1045
Tru1I	TTAA	8 cut(s)	225, 359, 479, 624, 663, 813, 846, 1050
Tru9I	TTAA	8 cut(s)	225, 359, 479, 624, 663, 813, 846, 1050
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	374, 1034
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	374, 1034
TspDTI	ATGAA	6 cut(s)	92, 270, 509, 572, 1188, 1257
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	2 cut(s)	62, 927
VspI	ATTAAT	2 cut(s)	225, 663
XapI	RAATTY	5 cut(s)	311, 465, 650, 848, 1096
XceI	RCATGY	1 cut(s)	836
XmnI	GAANNNNTTC	2 cut(s)	245, 860
XspI	CTAG	4 cut(s)	264, 461, 788, 803
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.