Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007853

Physical Location & Seq

Genomic Coordinates Forward (+)

9111662 .. 9118756

Gene Structure 7095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G122500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCGCTCAAAGGACAAAATCGCCTATTTTTACGACGGGGATGTGGGTAGCGTCTACTTTGGACCAAACCATCCCATGAAACCACACCGGCTATGTATGACCCATCATCTTGTCCTCTCATATGACCTCCACAAGAAGATGGAAATTTATCGGCCCCATAAGGCGTATCCGGTGGAGCTTGCGCAATTCCATTCAGCTGACTATGTTGAGTTTCTACATCGGATTACGCCCGACACACAGCACTTGTTCTCGAATGAACTGGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTTGATAACTTGTTTGAATTTTGTCAAATTTATGCCGGTGGAACAATAGATGCTGCACGTAGGTTGAACAATAAACTTTGTGACATTGCTATAAATTGGGCTGGCGGACTACACCATGCCAAGAAGTGCGAGGCATCCGGATTTTGTTACATCAATGACTTGGTCTTGGGGATCTTGGAGCTTCTAAAACATCATGCCCGAGTATTGTACATTGACATAGATGTGCATCATGGTGATGGCGTAGAAGAAGCTTTTTATTTTACTGATAGGGTGATGACGGTTAGTTTTCACAAATTTGGGGATATGTTTTTCCCAGGAACGGGTGATGTTAAGGAAGTAGGAGAAAGAGAAGGAAAGTTTTATGCCATCAATGTCCCACTGAAGGATGGAATAGATGACACTAGCTTCAATAGACTTTTTAAGACTATTATTTCCAAGGTTGTTGAAACATATCTACCAGGCGTGATAGTTCTCCAATGTGGGGCAGATTCTCTTGCTGGAGACCGCTTGGGCTGCTTCAATCTCTCCATTGATGGTCATGCTGAATGTGTTAGGTTTGTGAAGAAATTCAATTTACCCTTACTGGTTACAGGAGGCGGTGGATACACGAAAGAGAATGTTGCTCGGTGTTGGACTGTTGAAACTGGAGTTCTTCTTGATTCAGAACTTCCTAATGAGATCCCAGAAAACGAGTATATCAAGTATTTTTCTCCCGACTTCTCTTTGAGGATTCCAAATGGACATATAGAGAACCTAAATAGTAAATCGTATATTAGCACGATTAAAATGCAAGTCTTGGAAAATCTCCGTTGCATCCAACATGCTCCTAATGTACAAATGCAAGAGGTTCCACCTGACTTTTATATTCCCGATTTTGATGAAGATGCGCAGAACCCTGATGAACGCGTGGATCAGCACACCCAAGACAAGCACATTCAGCGTGATGATGAATATTACGAAGGAGACAATGATAATGATCACAACATGGATGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010029 GO:0010187 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0065007 GO:0070932 GO:0071704 GO:0071840 GO:0097159 GO:0098732 GO:1900055 GO:1900140 GO:1901363 GO:1901564 GO:1990619 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

431

Amino Acids

49.2

Weight (kDa)

5.18

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44680
fragaria_vesca	FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 FvH4_5g27310
malus_domestica	MD11G1159400.v1.1
prunus_persica	Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1
pyrus_communis	pycom03g09310 pycom11g13010
rosa_chinensis	RchiOBHm_Chr7g0218461
rosa_laevigata	RLG00000002371
rosa_multiflora	Rmu_sc0001301.1_g000083
rosa_roxburghii	Rroxscaffold_3G00240940
rosa_rugosa	Rorug07G0177300 Rorug07G0177300 Rorug07G0177300
rosa_samantha	Rh7AG318700 Rh7CG335700
rosa_wichuraiana	Rw7G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	183, 1182
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	1200
AccIII	TCCGGA	1 cut(s)	431
AciI	CCGC	3 cut(s)	399, 799, 891
AclWI	GGATC	3 cut(s)	473, 967, 1212
AcsI	RAATTY	5 cut(s)	144, 311, 321, 587, 860
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	2 cut(s)	503, 1128
AfiI	CCNNNNNNNGG	4 cut(s)	613, 614, 676, 775
AflIII	ACRYGT	1 cut(s)	1198
AgsI	TTSAA	7 cut(s)	311, 361, 703, 740, 814, 865, 935
AjnI	CCWGG	2 cut(s)	607, 751
AluBI	AGCT	5 cut(s)	178, 197, 475, 545, 699
AluI	AGCT	5 cut(s)	178, 197, 475, 545, 699
Alw26I	GTCTC	2 cut(s)	789, 1251
AlwI	GGATC	3 cut(s)	473, 967, 1212
Ama87I	CYCGRG	1 cut(s)	492
Aor13HI	TCCGGA	1 cut(s)	431
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	347, 807
ApoI	RAATTY	5 cut(s)	144, 311, 321, 587, 860
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	3 cut(s)	6, 184, 1183
AspS9I	GGNCC	2 cut(s)	62, 153
AsuHPI	GGTGA	3 cut(s)	539, 577, 629
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	334, 794
BccI	CCATC	7 cut(s)	78, 111, 133, 524, 668, 674, 821
BcgI	CGANNNNNNTGC	2 cut(s)	1063, 1097
BciT130I	CCWGG	2 cut(s)	609, 753
BciVI	GTATCC	2 cut(s)	177, 890
BclI	TGATCA	1 cut(s)	1270
BcoDI	GTCTC	2 cut(s)	789, 1251
BfaI	CTAG	1 cut(s)	696
BfuI	GTATCC	2 cut(s)	177, 890
BisI	GCNGC	2 cut(s)	348, 808
BlsI	GCNGC	2 cut(s)	349, 809
Bme1390I	CCNGG	2 cut(s)	609, 753
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	62, 153
BmiI	GGNNCC	2 cut(s)	155, 1143
BmrFI	CCNGG	2 cut(s)	609, 753
BmsI	GCATC	5 cut(s)	334, 437, 529, 1116, 1168
BpmI	CTGGAG	2 cut(s)	813, 960
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	519, 1269
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	2 cut(s)	607, 729
BsaWI	WCCGGW	2 cut(s)	169, 431
Bsc4I	CCNNNNNNNGG	4 cut(s)	613, 614, 676, 775
Bse118I	RCCGGY	2 cut(s)	87, 329
Bse1I	ACTGG	3 cut(s)	264, 882, 943
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	519, 1269
BseAI	TCCGGA	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	609, 753
BseDI	CCNNGG	2 cut(s)	607, 729
BseGI	GGATG	6 cut(s)	46, 70, 428, 685, 1107, 1288
BseJI	GATNNNNATC	2 cut(s)	519, 1269
BseLI	CCNNNNNNNGG	4 cut(s)	613, 614, 676, 775
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	264, 882, 943
BseXI	GCAGC	2 cut(s)	334, 794
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	1200
BshFI	GGCC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	88, 170, 330, 432
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	4 cut(s)	613, 614, 676, 775
BsmAI	GTCTC	2 cut(s)	789, 1251
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	492
Bsp13I	TCCGGA	1 cut(s)	431
Bsp1407I	TGTACA	2 cut(s)	501, 1126
Bsp143I	GATC	4 cut(s)	465, 972, 1204, 1270
BspACI	CCGC	3 cut(s)	399, 799, 891
BspANI	GGCC	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	431
BspFNI	CGCG	1 cut(s)	1200
BspLI	GGNNCC	2 cut(s)	155, 1143
BspPI	GGATC	3 cut(s)	473, 967, 1212
BspTNI	GGTCTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	87, 329
BsrGI	TGTACA	2 cut(s)	501, 1126
BsrI	ACTGG	3 cut(s)	264, 882, 943
BssAI	RCCGGY	2 cut(s)	87, 329
BssECI	CCNNGG	2 cut(s)	607, 729
BssMI	GATC	4 cut(s)	465, 972, 1204, 1270
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	2 cut(s)	609, 753
Bst4CI	ACNGT	2 cut(s)	574, 931
BstAUI	TGTACA	2 cut(s)	501, 1126
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	180, 397
BstF5I	GGATG	6 cut(s)	46, 70, 428, 685, 1107, 1288
BstFNI	CGCG	1 cut(s)	1200
BstHHI	GCGC	3 cut(s)	6, 184, 1183
BstKTI	GATC	4 cut(s)	468, 975, 1207, 1273
BstMAI	GTCTC	2 cut(s)	789, 1251
BstMBI	GATC	4 cut(s)	465, 972, 1204, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	807, 1231
BstNI	CCWGG	2 cut(s)	609, 753
BstNSI	RCATGY	1 cut(s)	1118
BstSCI	CCNGG	2 cut(s)	607, 751
BstUI	CGCG	1 cut(s)	1200
BstV1I	GCAGC	2 cut(s)	334, 794
BstX2I	RGATCY	2 cut(s)	465, 972
BstYI	RGATCY	2 cut(s)	465, 972
BsuI	GTATCC	2 cut(s)	177, 890
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	6 cut(s)	46, 70, 428, 685, 1107, 1288
BtsIMutI	CAGTG	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	180, 397
CfoI	GCGC	3 cut(s)	6, 184, 1183
Cfr10I	RCCGGY	2 cut(s)	87, 329
Cfr13I	GGNCC	2 cut(s)	62, 153
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	502, 1127
CviAII	CATG	7 cut(s)	76, 410, 488, 524, 833, 1115, 1279
CviJI	RGCY	9 cut(s)	91, 154, 178, 197, 395, 475, 545, 699, 807
CviKI_1	RGCY	9 cut(s)	91, 154, 178, 197, 395, 475, 545, 699, 807
CviQI	GTAC	2 cut(s)	502, 1127
DpnI	GATC	4 cut(s)	467, 974, 1206, 1272
DpnII	GATC	4 cut(s)	465, 972, 1204, 1270
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	607, 751
EcoT14I	CCWWGG	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	7 cut(s)	79, 413, 491, 527, 836, 1118, 1282
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	7 cut(s)	75, 409, 487, 523, 832, 1114, 1278
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	1270
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	348, 808
FokI	GGATG	5 cut(s)	53, 57, 415, 692, 1094
Fsp4HI	GCNGC	2 cut(s)	348, 808
FspBI	CTAG	1 cut(s)	696
FspI	TGCGCA	2 cut(s)	183, 1182
GlaI	GCGC	3 cut(s)	5, 183, 1182
GluI	GCNGC	2 cut(s)	348, 808
GsuI	CTGGAG	2 cut(s)	813, 960
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	4 cut(s)	88, 170, 330, 432
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	6, 184, 1183
Hin1II	CATG	7 cut(s)	79, 413, 491, 527, 836, 1118, 1282
Hin6I	GCGC	3 cut(s)	4, 182, 1181
HinP1I	GCGC	3 cut(s)	4, 182, 1181
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	3 cut(s)	782, 953, 1024
HpaII	CCGG	4 cut(s)	88, 170, 330, 432
HphI	GGTGA	3 cut(s)	539, 577, 629
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	222, 958
Hpy188III	TCNNGA	5 cut(s)	250, 432, 950, 1007, 1163
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	638, 670, 1247
HpyCH4III	ACNGT	2 cut(s)	574, 931
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	350, 520, 1084, 1107, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	807, 1231
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	7 cut(s)	79, 413, 491, 527, 836, 1118, 1282
HspAI	GCGC	3 cut(s)	4, 182, 1181
Kpn2I	TCCGGA	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	1270
Kzo9I	GATC	4 cut(s)	465, 972, 1204, 1270
LmnI	GCTCC	3 cut(s)	175, 472, 1123
Lsp1109I	GCAGC	2 cut(s)	334, 794
LweI	GCATC	5 cut(s)	334, 437, 529, 1116, 1168
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	3 cut(s)	374, 440, 880
MalI	GATC	4 cut(s)	467, 974, 1206, 1272
MboI	GATC	4 cut(s)	465, 972, 1204, 1270
MboII	GAAGA	6 cut(s)	148, 293, 551, 868, 938, 1187
MflI	RGATCY	2 cut(s)	465, 972
MluCI	AATT	8 cut(s)	144, 185, 311, 321, 388, 587, 860, 865
MluI	ACGCGT	1 cut(s)	1198
MmeI	TCCRAC	2 cut(s)	905, 1135
MnlI	CCTC	6 cut(s)	125, 137, 418, 881, 1014, 1132
MroI	TCCGGA	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	3 cut(s)	624, 714, 1077
MslI	CAYNNNNRTG	3 cut(s)	515, 525, 528
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	4 cut(s)	88, 170, 330, 432
MspR9I	CCNGG	2 cut(s)	609, 753
MvaI	CCWGG	2 cut(s)	609, 753
MvnI	CGCG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	2 cut(s)	807, 1231
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	4 cut(s)	465, 972, 1204, 1270
NlaIII	CATG	7 cut(s)	79, 413, 491, 527, 836, 1118, 1282
NlaIV	GGNNCC	2 cut(s)	155, 1143
NmuCI	GTSAC	1 cut(s)	374
NsbI	TGCGCA	2 cut(s)	183, 1182
NspI	RCATGY	1 cut(s)	1118
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	782, 953, 1024
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	349, 809
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	607, 751
PspGI	CCWGG	2 cut(s)	607, 751
PspN4I	GGNNCC	2 cut(s)	155, 1143
PspPI	GGNCC	2 cut(s)	62, 153
PsuI	RGATCY	2 cut(s)	465, 972
PsyI	GACNNNGTC	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	503, 1128
RsaNI	GTAC	2 cut(s)	502, 1127
RseI	CAYNNNNRTG	3 cut(s)	515, 525, 528
SaqAI	TTAA	3 cut(s)	624, 714, 1077
SatI	GCNGC	2 cut(s)	348, 808
Sau3AI	GATC	4 cut(s)	465, 972, 1204, 1270
Sau96I	GGNCC	2 cut(s)	62, 153
ScrFI	CCNGG	2 cut(s)	609, 753
SfaNI	GCATC	5 cut(s)	334, 437, 529, 1116, 1168
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	3 cut(s)	515, 525, 528
Sse9I	AATT	8 cut(s)	144, 185, 311, 321, 388, 587, 860, 865
SsiI	CCGC	3 cut(s)	399, 799, 891
SspI	AATATT	1 cut(s)	1247
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	607, 751
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	2 cut(s)	574, 931
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	251
TasI	AATT	8 cut(s)	144, 185, 311, 321, 388, 587, 860, 865
TatI	WGTACW	2 cut(s)	501, 1126
TfiI	GAWTC	3 cut(s)	782, 953, 1024
Tru1I	TTAA	3 cut(s)	624, 714, 1077
Tru9I	TTAA	3 cut(s)	624, 714, 1077
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	347, 807
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	92, 270, 1188, 1209, 1257
TspGWI	ACGGA	1 cut(s)	1091
TspRI	CASTG	1 cut(s)	678
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	5 cut(s)	144, 311, 321, 587, 860
XceI	RCATGY	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.