RLG00000002371

Belongs to the histone deacetylase family. HD Type 1 subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
32965941 .. 32973551
7611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002371

Sequence Viewer

Length: 1560 bp
ATGGATGCAAGTGACTTTCAGCATGTTATGGGATTGAATAATGCGGATTTGGGTGTCGTCTTAAAAAACTTCATAAACGATACCATTGAGTCTACAACAGAATCGCAGCCGAAGGTAAGAAAGAAATCAGAGAAAGAGATTCAAGAACCAAGAGGGCTTCTCTTATTCATTCTTCGCTTTCTGTTTCTCAAAGCTTCAAGGGTTTTGGGGAGCTCTGAAACCCGGCATTTTTGCTCTTCTGGTTTCTGCAAAATTGCAAATATGCGCTCAAAGGACAGAATCTCCTACTTCTATGACGGGGATGTGGGCAGCGTCTACTTCGGGCCCAACCATCCTATGAAGCCACACCGGCTATGTATGACCCATCACCTTGTGCTCTCATATGATCTCCACAAGAAGATGGAAATTTATCGGCCCCACAAGGCATATCCGGTGGAGCTTGCGCAATTCCATTCCGCTGACTATGTTGAGTTTCTCCACCGGATTACACCTGACAAGCAGCATTTGTTCTCCATTGAATTGGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTTGATAACTTGTTTGAATTCTGTCAAATTTATGCCGGTGGCACAATAGATGCTGCACGTAGGTTGAACAATAAGCTCTGTGACATTGCTATAAATTGGGCTGGTGGACTACACCATGCGAAAAAGTGTGGGGCATCTGGATTTTGTTACATCAATGACTTGGTCTTGGGTATCTTGGAGCTTCTAAAACATCATGCCCGAGTATTATACATTGACATAGATGTGCATCATGGTGATGGAGTAGAGGAAGCTTTTTATTTTACTGATAGGGTGATGACTGTTAGTTTTCACAAGTTTGGGGATCTGTTTTTTCCAGGAACAGGTGATGTTAAGGAAATAGGAGAAAGGGAAGGCAAGTTTTATGCCATCAATGTTCCACTAAAGAATGGAATAGATGATACTAGCTTCACCAGACTTTTCAAGACTATTATTTCCAAGGTTATTGAAACTTATCAACCAGGTGCAATAGTTCTCCAATGTGGGGCAGATTCGCTTGCAGGAGACCGCTTGGGCTGCTTCAATCTCTCCATTGATGGTCACGCTGAATGTGTTAGGTTCGTGAAGAAGTTCAATATACCCTTACTGGTCACAGGAGGTGGTGGATACACAAAAGAGAATGTTGCTCGATGTTGGACTGTTGAAACTGGAGTTCTTCTGGATTCAGATCTTCCCAATGAGATCCCAGAAAACGAGTATATTAAGTATTTTTCACCAGAGTTCTCGTTGAGGATTCCAAATGGCCATATAGAAAACCTAAATAGTAAATCATATCTCAGCACAATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCTAGTGTACAATTGCAAGAGGTTCCACCTGATTTTTATATTCCAGATTTTGATGAAGATGAGCAGAACCCTGATGAACGTGTGCATCAGCATACCCAAGACAAGCACATTCAGCGTGATGACGAATATTATGACGGTGACAATGATAACGATCACAACGTGGAAGATGCACAGAATTAA

Protein Analysis

520

Amino Acids

59.19

Weight (kDa)

5.6

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 111 - 401 5.1e-86 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 444
AccI GTMKAC 2 cut(s) 92, 315
AciI CCGC 3 cut(s) 44, 456, 1060
AclWI GGATC 2 cut(s) 864, 1228
AcoI YGGCCR 1 cut(s) 1294
AcsI RAATTY 3 cut(s) 405, 572, 582
AdeI CACNNNGTG 2 cut(s) 373, 1540
AfaI GTAC 1 cut(s) 1389
AfiI CCNNNNNNNGG 2 cut(s) 875, 1036
AflIII ACRYGT 1 cut(s) 1459
AjnI CCWGG 2 cut(s) 868, 1012
AluBI AGCT 7 cut(s) 194, 213, 439, 631, 736, 806, 960
AluI AGCT 7 cut(s) 194, 213, 439, 631, 736, 806, 960
Alw21I GWGCWC 2 cut(s) 215, 378
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 2 cut(s) 864, 1228
Ama87I CYCGRG 1 cut(s) 753
AoxI GGCC 3 cut(s) 323, 413, 1294
ApaI GGGCCC 1 cut(s) 327
ApeKI GCWGC 5 cut(s) 106, 309, 499, 608, 1068
ApoI RAATTY 3 cut(s) 405, 572, 582
Asp700I GAANNNNTTC 2 cut(s) 1121, 1359
AspLEI GCGC 2 cut(s) 267, 445
AspS9I GGNCC 3 cut(s) 323, 324, 414
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 7 cut(s) 359, 800, 838, 890, 955, 1257, 1529
AvaI CYCGRG 1 cut(s) 753
BaeGI GKGCMC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 1296
BanII GRGCYC 2 cut(s) 215, 327
Bbv12I GWGCWC 2 cut(s) 215, 378
BbvI GCAGC 5 cut(s) 118, 321, 511, 595, 1055
BccI CCATC 6 cut(s) 339, 372, 394, 785, 929, 1082
BciT130I CCWGG 2 cut(s) 870, 1014
BciVI GTATCC 1 cut(s) 1151
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 2 cut(s) 957, 1383
BfuI GTATCC 1 cut(s) 1151
BglI GCCNNNNNGGC 1 cut(s) 349
BglII AGATCT 1 cut(s) 1219
BisI GCNGC 5 cut(s) 107, 310, 500, 609, 1069
BlsI GCNGC 5 cut(s) 108, 311, 501, 610, 1070
Bme1390I CCNGG 3 cut(s) 223, 870, 1014
BmeT110I CYCGRG 1 cut(s) 753
BmgT120I GGNCC 3 cut(s) 323, 324, 414
BmiI GGNNCC 3 cut(s) 325, 416, 1404
BmrFI CCNGG 3 cut(s) 223, 870, 1014
BmsI GCATC 6 cut(s) 595, 698, 790, 1377, 1474, 1537
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 1221
BpuMI CCSGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 614
BsaBI GATNNNNATC 3 cut(s) 780, 1218, 1530
BsaI GGTCTC 1 cut(s) 1050
BsaJI CCNNGG 1 cut(s) 990
BsaWI WCCGGW 2 cut(s) 430, 480
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 1036
Bse118I RCCGGY 2 cut(s) 348, 590
Bse1I ACTGG 2 cut(s) 1143, 1204
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 3 cut(s) 780, 1218, 1530
BseBI CCWGG 2 cut(s) 870, 1014
BseDI CCNNGG 1 cut(s) 990
BseGI GGATG 4 cut(s) 10, 307, 331, 1368
BseJI GATNNNNATC 3 cut(s) 780, 1218, 1530
BseLI CCNNNNNNNGG 2 cut(s) 875, 1036
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 1342
BseNI ACTGG 2 cut(s) 1143, 1204
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 5 cut(s) 118, 321, 511, 595, 1055
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 3 cut(s) 325, 415, 1296
BsiHKAI GWGCWC 2 cut(s) 215, 378
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 5 cut(s) 223, 349, 431, 481, 591
BslI CCNNNNNNNGG 2 cut(s) 875, 1036
BsmAI GTCTC 1 cut(s) 1050
BsnI GGCC 3 cut(s) 325, 415, 1296
Bso31I GGTCTC 1 cut(s) 1050
BsoBI CYCGRG 1 cut(s) 753
Bsp120I GGGCCC 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 215, 327, 378
Bsp1407I TGTACA 1 cut(s) 1387
Bsp143I GATC 5 cut(s) 385, 856, 1219, 1233, 1531
BspACI CCGC 3 cut(s) 44, 456, 1060
BspANI GGCC 3 cut(s) 325, 415, 1296
BspCNI CTCAG 1 cut(s) 1341
BspLI GGNNCC 3 cut(s) 325, 416, 1404
BspPI GGATC 2 cut(s) 864, 1228
BspQI GCTCTTC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 1050
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 348, 590
BsrGI TGTACA 1 cut(s) 1387
BsrI ACTGG 2 cut(s) 1143, 1204
BssAI RCCGGY 2 cut(s) 348, 590
BssECI CCNNGG 1 cut(s) 990
BssMI GATC 5 cut(s) 385, 856, 1219, 1233, 1531
BssT1I CCWWGG 1 cut(s) 990
Bst2UI CCWGG 2 cut(s) 870, 1014
Bst4CI ACNGT 3 cut(s) 835, 1192, 1517
Bst6I CTCTTC 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 1387
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 441, 1050
BstDEI CTNAG 1 cut(s) 1328
BstF5I GGATG 4 cut(s) 10, 307, 331, 1368
BstHHI GCGC 2 cut(s) 267, 445
BstKTI GATC 5 cut(s) 388, 859, 1222, 1236, 1534
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 5 cut(s) 385, 856, 1219, 1233, 1531
BstMWI GCNNNNNNNGC 3 cut(s) 349, 1068, 1492
BstNI CCWGG 2 cut(s) 870, 1014
BstNSI RCATGY 2 cut(s) 26, 1379
BstSCI CCNGG 3 cut(s) 221, 868, 1012
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 118, 321, 511, 595, 1055
BstX2I RGATCY 3 cut(s) 856, 1219, 1233
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 3 cut(s) 856, 1219, 1233
BsuI GTATCC 1 cut(s) 1151
BsuRI GGCC 3 cut(s) 325, 415, 1296
BtsCI GGATG 4 cut(s) 10, 307, 331, 1368
Cac8I GCNNGC 2 cut(s) 441, 1050
CfoI GCGC 2 cut(s) 267, 445
Cfr10I RCCGGY 2 cut(s) 348, 590
Cfr13I GGNCC 3 cut(s) 323, 324, 414
CseI GACGC 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 1012
Csp6I GTAC 1 cut(s) 1388
CviAII CATG 5 cut(s) 23, 671, 749, 785, 1376
CviQI GTAC 1 cut(s) 1388
DdeI CTNAG 1 cut(s) 1328
DpnI GATC 5 cut(s) 387, 858, 1221, 1235, 1533
DpnII GATC 5 cut(s) 385, 856, 1219, 1233, 1531
DraIII CACNNNGTG 2 cut(s) 373, 1540
EaeI YGGCCR 1 cut(s) 1294
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 990
Eco24I GRGCYC 2 cut(s) 215, 327
Eco31I GGTCTC 1 cut(s) 1050
Eco53kI GAGCTC 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 868, 1012
EcoT14I CCWWGG 1 cut(s) 990
EcoT38I GRGCYC 2 cut(s) 215, 327
ErhI CCWWGG 1 cut(s) 990
FaeI CATG 5 cut(s) 26, 674, 752, 788, 1379
FatI CATG 5 cut(s) 22, 670, 748, 784, 1375
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 2 cut(s) 92, 315
Fnu4HI GCNGC 5 cut(s) 107, 310, 500, 609, 1069
FokI GGATG 4 cut(s) 17, 314, 318, 1355
FriOI GRGCYC 2 cut(s) 215, 327
Fsp4HI GCNGC 5 cut(s) 107, 310, 500, 609, 1069
FspBI CTAG 2 cut(s) 957, 1383
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 2 cut(s) 266, 444
GluI GCNGC 5 cut(s) 107, 310, 500, 609, 1069
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 3 cut(s) 325, 415, 1296
HapII CCGG 5 cut(s) 223, 349, 431, 481, 591
HgaI GACGC 1 cut(s) 301
HhaI GCGC 2 cut(s) 267, 445
Hin1II CATG 5 cut(s) 26, 674, 752, 788, 1379
Hin6I GCGC 2 cut(s) 265, 443
HinP1I GCGC 2 cut(s) 265, 443
HindIII AAGCTT 2 cut(s) 192, 804
HinfI GANTC 7 cut(s) 89, 101, 139, 279, 1043, 1214, 1285
HpaII CCGG 5 cut(s) 223, 349, 431, 481, 591
HphI GGTGA 7 cut(s) 359, 800, 838, 890, 955, 1257, 1529
Hpy166II GTNNAC 4 cut(s) 93, 316, 662, 1388
Hpy188I TCNGA 3 cut(s) 130, 217, 1219
Hpy188III TCNNGA 6 cut(s) 143, 693, 976, 1114, 1211, 1424
Hpy8I GTNNAC 4 cut(s) 93, 316, 662, 1388
HpyAV CCTTC 2 cut(s) 106, 899
HpyCH4III ACNGT 3 cut(s) 835, 1192, 1517
HpyCH4IV ACGT 3 cut(s) 613, 1459, 1539
HpyF10VI GCNNNNNNNGC 3 cut(s) 349, 1068, 1492
HpyF3I CTNAG 1 cut(s) 1328
HpySE526I ACGT 3 cut(s) 613, 1459, 1539
Hsp92II CATG 5 cut(s) 26, 674, 752, 788, 1379
HspAI GCGC 2 cut(s) 265, 443
Kzo9I GATC 5 cut(s) 385, 856, 1219, 1233, 1531
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 4 cut(s) 210, 436, 733, 1384
Lsp1109I GCAGC 5 cut(s) 118, 321, 511, 595, 1055
LweI GCATC 6 cut(s) 595, 698, 790, 1377, 1474, 1537
MabI ACCWGGT 1 cut(s) 1012
MaeI CTAG 2 cut(s) 957, 1383
MaeII ACGT 3 cut(s) 613, 1459, 1539
MaeIII GTNAC 6 cut(s) 11, 635, 701, 1091, 1141, 1517
MalI GATC 5 cut(s) 387, 858, 1221, 1235, 1533
MboI GATC 5 cut(s) 385, 856, 1219, 1233, 1531
MfeI CAATTG 1 cut(s) 1391
MflI RGATCY 3 cut(s) 856, 1219, 1233
MhlI GDGCHC 3 cut(s) 215, 327, 378
MlsI TGGCCA 1 cut(s) 1296
MluNI TGGCCA 1 cut(s) 1296
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 1166, 1396
MnlI CCTC 5 cut(s) 146, 793, 1142, 1275, 1393
Mox20I TGGCCA 1 cut(s) 1296
MroXI GAANNNNTTC 2 cut(s) 1121, 1359
MscI TGGCCA 1 cut(s) 1296
MseI TTAA 5 cut(s) 62, 885, 1254, 1338, 1558
MslI CAYNNNNRTG 3 cut(s) 776, 786, 789
Msp20I TGGCCA 1 cut(s) 1296
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 5 cut(s) 223, 349, 431, 481, 591
MspR9I CCNGG 3 cut(s) 223, 870, 1014
MunI CAATTG 1 cut(s) 1391
MvaI CCWGG 2 cut(s) 870, 1014
MwoI GCNNNNNNNGC 3 cut(s) 349, 1068, 1492
NciI CCSGG 1 cut(s) 223
NdeI CATATG 1 cut(s) 382
NdeII GATC 5 cut(s) 385, 856, 1219, 1233, 1531
NlaIII CATG 5 cut(s) 26, 674, 752, 788, 1379
NlaIV GGNNCC 3 cut(s) 325, 416, 1404
NmuCI GTSAC 5 cut(s) 11, 635, 1091, 1141, 1517
NsbI TGCGCA 1 cut(s) 444
NspI RCATGY 2 cut(s) 26, 1379
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 1536
PdmI GAANNNNTTC 2 cut(s) 1121, 1359
PfeI GAWTC 6 cut(s) 101, 139, 279, 1043, 1214, 1285
PflFI GACNNNGTC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 868
PkrI GCNGC 5 cut(s) 108, 311, 501, 610, 1070
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 868, 1012
PspGI CCWGG 2 cut(s) 868, 1012
PspN4I GGNNCC 3 cut(s) 325, 416, 1404
PspOMI GGGCCC 1 cut(s) 323
PspPI GGNCC 3 cut(s) 323, 324, 414
PsuI RGATCY 3 cut(s) 856, 1219, 1233
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 1 cut(s) 1389
RsaNI GTAC 1 cut(s) 1388
RseI CAYNNNNRTG 3 cut(s) 776, 786, 789
SacI GAGCTC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 5 cut(s) 62, 885, 1254, 1338, 1558
SatI GCNGC 5 cut(s) 107, 310, 500, 609, 1069
Sau3AI GATC 5 cut(s) 385, 856, 1219, 1233, 1531
Sau96I GGNCC 3 cut(s) 323, 324, 414
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 223, 870, 1014
SduI GDGCHC 3 cut(s) 215, 327, 378
SexAI ACCWGGT 1 cut(s) 1012
SfaNI GCATC 6 cut(s) 595, 698, 790, 1377, 1474, 1537
SmiMI CAYNNNNRTG 3 cut(s) 776, 786, 789
SsiI CCGC 3 cut(s) 44, 456, 1060
SspI AATATT 1 cut(s) 1508
SspMI CTAG 2 cut(s) 957, 1383
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 221, 868, 1012
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 3 cut(s) 835, 1192, 1517
TaiI ACGT 3 cut(s) 616, 1462, 1542
TaqI TCGA 1 cut(s) 1180
TatI WGTACW 1 cut(s) 1387
TfiI GAWTC 6 cut(s) 101, 139, 279, 1043, 1214, 1285
Tru1I TTAA 5 cut(s) 62, 885, 1254, 1338, 1558
Tru9I TTAA 5 cut(s) 62, 885, 1254, 1338, 1558
TseFI GTSAC 5 cut(s) 11, 635, 1091, 1141, 1517
TseI GCWGC 5 cut(s) 106, 309, 499, 608, 1068
Tsp45I GTSAC 5 cut(s) 11, 635, 1091, 1141, 1517
TspDTI ATGAA 5 cut(s) 61, 157, 353, 1449, 1470
Tth111I GACNNNGTC 1 cut(s) 716
XapI RAATTY 3 cut(s) 405, 572, 582
XceI RCATGY 2 cut(s) 26, 1379
XmiI GTMKAC 2 cut(s) 92, 315
XmnI GAANNNNTTC 2 cut(s) 1121, 1359
XspI CTAG 2 cut(s) 957, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.