FvH4_5g27310

Belongs to the histone deacetylase family. HD Type 1 subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
18550777 .. 18558918
8142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27310.t3

Sequence Viewer

Length: 1293 bp
ATGCGCTCAAAAGACAGAATCTCTTACTTCTATGATGGGGATGTGGGCAGCGTCTACTTCGGGCCCAACCATCCAATGAAGCCACACCGGCTGTGTATGACCCATCACCTTGTGCTCTCTTATGATCTCCACAAGAAGATGGAAATTTATCGGCCCCACAAGGCGTACCCGGTGGAGCTTGCGCAGTTCCATTCGGCCGACTATGTTGAGTTTCTCCACCGGATTACACCGGACAAGCAGCATTTGTTCTCCAATGAATTAGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTCGACAACTTGTTTGAATTCTGTCAGATTTATGCCGGCGGCACGATAGATGCTGCACGTAGGTTGAACAATAAGCTCTGTGACATTGCTATAAATTGGGCTGGTGGATTACACCATGCCAAAAAGTGTGGCGCATCTGGATTTTGTTACATCAATGATTTGGTCTTGGGTATCTTGGAGCTTCTAAAACATCATGCTCGGGTATTATACATTGACATAGATGTGCATCATGGCGATGGGGTAGAGGAAGCTTTTTACTTTACTGATAGGGTAATGACTGTTAGTTTCCACAAGTTTGGGGACCTATTTTTTCCAGGAACCGGTGATGTTAAGGAAATAGGAGAAAGGGAAGGCAAGTTTTATGCCATTAATGTCCCACTAAAGAATGGAATAGATGATACAAGCTTCACCAGACTTTTCAAGACTATTATTTCCAAGGTTATTGAAACATATCAACCAGGTGCAATAGTTCTCCAATGTGGGGCAGATTCGCTTGCTGGAGACCGCTTGGGCTGCTTCAATCTCTCCATTGATGGTCATGCTGAATGTGTTAGGTTTGTGAAGAAGTTCAATATACCCTTACTGGTCACAGGAGGTGGTGGATACACAAAAGAGAATGTGGCTCGGTGTTGGACTGTTGAGACTGGAGTTCTACTGGATTCAGATCTTCCCAATGAGATCCCAGAAAACGAGTATATTAAGTATTTTTCACCAGAGTTCTCGTTGAGGATTCCAAATGGCCATATAGAGAACCTAAATAGTAAATCATATCTTAGCACAATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCTAGTGTACAATTGCACGAGGTTCCACCAGATTTTTATATTCCAGATTTTGATGAAGATGAGCAGAACCCTGATGAACGTGTGCATCAGCATACCCAAGACAAGCACATTCAGCGTGATGACGAATATTATGAGGGGGACAATGATAACGATCACAACATGGAAGACACATAA

Protein Analysis

431

Amino Acids

49.24

Weight (kDa)

5.42

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 24 - 314 1.7e-86 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AccI GTMKAC 1 cut(s) 54
AciI CCGC 2 cut(s) 333, 799
AclWI GGATC 1 cut(s) 967
AcoI YGGCCR 2 cut(s) 195, 1033
AcsI RAATTY 2 cut(s) 144, 311
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 2 cut(s) 167, 1128
AfiI CCNNNNNNNGG 2 cut(s) 614, 775
AflIII ACRYGT 1 cut(s) 1198
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 6 cut(s) 311, 361, 715, 740, 814, 865
AjnI CCWGG 2 cut(s) 607, 751
AluBI AGCT 5 cut(s) 178, 370, 475, 545, 699
AluI AGCT 5 cut(s) 178, 370, 475, 545, 699
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 2 cut(s) 789, 929
AlwI GGATC 1 cut(s) 967
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 4 cut(s) 62, 152, 195, 1033
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 48, 238, 347, 807
ApoI RAATTY 2 cut(s) 144, 311
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AseI ATTAAT 1 cut(s) 663
AsiGI ACCGGT 1 cut(s) 614
Asp700I GAANNNNTTC 2 cut(s) 860, 1098
AspLEI GCGC 3 cut(s) 6, 184, 428
AspS9I GGNCC 4 cut(s) 62, 63, 153, 595
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 4 cut(s) 98, 629, 694, 996
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 1035
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 60, 250, 334, 794
BccI CCATC 6 cut(s) 29, 78, 111, 133, 524, 821
BciT130I CCWGG 2 cut(s) 609, 753
BciVI GTATCC 1 cut(s) 890
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 789, 929
BfaI CTAG 1 cut(s) 1122
BfuI GTATCC 1 cut(s) 890
BglI GCCNNNNNGGC 1 cut(s) 88
BglII AGATCT 1 cut(s) 958
BisI GCNGC 5 cut(s) 49, 239, 334, 348, 808
BlsI GCNGC 5 cut(s) 50, 240, 335, 349, 809
Bme1390I CCNGG 3 cut(s) 170, 609, 753
Bme18I GGWCC 1 cut(s) 595
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 4 cut(s) 62, 63, 153, 595
BmiI GGNNCC 5 cut(s) 64, 155, 596, 613, 1143
BmrFI CCNGG 3 cut(s) 170, 609, 753
BmsI GCATC 5 cut(s) 334, 437, 529, 1116, 1213
BpmI CTGGAG 2 cut(s) 813, 960
BpuMI CCSGG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 3 cut(s) 519, 957, 1269
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 729
BsaWI WCCGGW 3 cut(s) 219, 229, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 775
Bse118I RCCGGY 3 cut(s) 87, 329, 614
Bse1I ACTGG 3 cut(s) 882, 943, 954
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 3 cut(s) 519, 957, 1269
BseBI CCWGG 2 cut(s) 609, 753
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 3 cut(s) 46, 70, 1107
BseJI GATNNNNATC 3 cut(s) 519, 957, 1269
BseLI CCNNNNNNNGG 2 cut(s) 614, 775
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 882, 943, 954
BseSI GKGCMC 1 cut(s) 66
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 4 cut(s) 60, 250, 334, 794
BsgI GTGCAG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 4 cut(s) 64, 154, 197, 1035
BshTI ACCGGT 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 6 cut(s) 88, 170, 220, 230, 330, 615
BslFI GGGAC 3 cut(s) 608, 653, 1271
BslI CCNNNNNNNGG 2 cut(s) 614, 775
BsmAI GTCTC 2 cut(s) 789, 929
BsmFI GGGAC 3 cut(s) 608, 653, 1271
BsnI GGCC 4 cut(s) 64, 154, 197, 1035
Bso31I GGTCTC 1 cut(s) 789
BsoBI CYCGRG 1 cut(s) 492
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 66, 117
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 4 cut(s) 124, 958, 972, 1270
BspACI CCGC 2 cut(s) 333, 799
BspANI GGCC 4 cut(s) 64, 154, 197, 1035
BspLI GGNNCC 5 cut(s) 64, 155, 596, 613, 1143
BspPI GGATC 1 cut(s) 967
BspTNI GGTCTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 3 cut(s) 87, 329, 614
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 3 cut(s) 882, 943, 954
BssAI RCCGGY 3 cut(s) 87, 329, 614
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 4 cut(s) 124, 958, 972, 1270
BssSI CACGAG 1 cut(s) 1136
BssT1I CCWWGG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 1136
Bst2UI CCWGG 2 cut(s) 609, 753
Bst4CI ACNGT 2 cut(s) 574, 931
BstAUI TGTACA 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 180, 331, 789
BstDEI CTNAG 1 cut(s) 1067
BstF5I GGATG 3 cut(s) 46, 70, 1107
BstHHI GCGC 3 cut(s) 6, 184, 428
BstKTI GATC 4 cut(s) 127, 961, 975, 1273
BstMAI GTCTC 2 cut(s) 789, 929
BstMBI GATC 4 cut(s) 124, 958, 972, 1270
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 88, 807, 1231
BstNI CCWGG 2 cut(s) 609, 753
BstNSI RCATGY 1 cut(s) 1118
BstSCI CCNGG 3 cut(s) 168, 607, 751
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 60, 250, 334, 794
BstX2I RGATCY 2 cut(s) 958, 972
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 2 cut(s) 958, 972
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 890
BsuRI GGCC 4 cut(s) 64, 154, 197, 1035
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 3 cut(s) 46, 70, 1107
Cac8I GCNNGC 3 cut(s) 180, 331, 789
CfoI GCGC 3 cut(s) 6, 184, 428
Cfr10I RCCGGY 3 cut(s) 87, 329, 614
Cfr13I GGNCC 4 cut(s) 62, 63, 153, 595
CseI GACGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 2 cut(s) 166, 1127
CspAI ACCGGT 1 cut(s) 614
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 6 cut(s) 410, 488, 524, 833, 1115, 1279
CviQI GTAC 2 cut(s) 166, 1127
DdeI CTNAG 1 cut(s) 1067
DpnI GATC 4 cut(s) 126, 960, 974, 1272
DpnII GATC 4 cut(s) 124, 958, 972, 1270
DraIII CACNNNGTG 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 195, 1033
EagI CGGCCG 1 cut(s) 195
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 595
Eco52I CGGCCG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 607, 751
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 6 cut(s) 413, 491, 527, 836, 1118, 1282
FaqI GGGAC 3 cut(s) 608, 653, 1271
FatI CATG 6 cut(s) 409, 487, 523, 832, 1114, 1278
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 5 cut(s) 49, 239, 334, 348, 808
FokI GGATG 3 cut(s) 53, 57, 1094
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 5 cut(s) 49, 239, 334, 348, 808
FspBI CTAG 1 cut(s) 1122
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 3 cut(s) 5, 183, 427
GluI GCNGC 5 cut(s) 49, 239, 334, 348, 808
GsuI CTGGAG 2 cut(s) 813, 960
HaeIII GGCC 4 cut(s) 64, 154, 197, 1035
HapII CCGG 6 cut(s) 88, 170, 220, 230, 330, 615
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 6, 184, 428
Hin1II CATG 6 cut(s) 413, 491, 527, 836, 1118, 1282
Hin6I GCGC 3 cut(s) 4, 182, 426
HinP1I GCGC 3 cut(s) 4, 182, 426
HindIII AAGCTT 2 cut(s) 543, 697
HinfI GANTC 4 cut(s) 18, 782, 953, 1024
HpaII CCGG 6 cut(s) 88, 170, 220, 230, 330, 615
HphI GGTGA 4 cut(s) 98, 629, 694, 996
Hpy166II GTNNAC 2 cut(s) 55, 1127
Hpy188I TCNGA 2 cut(s) 321, 958
Hpy188III TCNNGA 3 cut(s) 432, 715, 1163
Hpy8I GTNNAC 2 cut(s) 55, 1127
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 574, 931
HpyCH4IV ACGT 2 cut(s) 352, 1198
HpyCH4V TGCA 7 cut(s) 350, 520, 758, 1084, 1107, 1135, 1204
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 807, 1231
HpyF3I CTNAG 1 cut(s) 1067
HpySE526I ACGT 2 cut(s) 352, 1198
Hsp92II CATG 6 cut(s) 413, 491, 527, 836, 1118, 1282
HspAI GCGC 3 cut(s) 4, 182, 426
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 124, 958, 972, 1270
LmnI GCTCC 3 cut(s) 175, 472, 1123
Lsp1109I GCAGC 4 cut(s) 60, 250, 334, 794
LweI GCATC 5 cut(s) 334, 437, 529, 1116, 1213
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 1 cut(s) 1122
MaeII ACGT 2 cut(s) 352, 1198
MaeIII GTNAC 3 cut(s) 374, 440, 880
MalI GATC 4 cut(s) 126, 960, 974, 1272
MboI GATC 4 cut(s) 124, 958, 972, 1270
MboII GAAGA 6 cut(s) 148, 293, 868, 953, 1091, 1187
MfeI CAATTG 1 cut(s) 1130
MflI RGATCY 2 cut(s) 958, 972
MhlI GDGCHC 2 cut(s) 66, 117
MlsI TGGCCA 1 cut(s) 1035
MluCI AATT 6 cut(s) 144, 257, 311, 388, 1074, 1130
MluNI TGGCCA 1 cut(s) 1035
MmeI TCCRAC 2 cut(s) 905, 1135
MnlI CCTC 5 cut(s) 532, 881, 1014, 1132, 1246
Mox20I TGGCCA 1 cut(s) 1035
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 2 cut(s) 860, 1098
MscI TGGCCA 1 cut(s) 1035
MseI TTAA 4 cut(s) 624, 663, 993, 1077
MslI CAYNNNNRTG 2 cut(s) 515, 528
Msp20I TGGCCA 1 cut(s) 1035
MspI CCGG 6 cut(s) 88, 170, 220, 230, 330, 615
MspR9I CCNGG 3 cut(s) 170, 609, 753
MunI CAATTG 1 cut(s) 1130
MvaI CCWGG 2 cut(s) 609, 753
MwoI GCNNNNNNNGC 3 cut(s) 88, 807, 1231
NaeI GCCGGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 170
NdeII GATC 4 cut(s) 124, 958, 972, 1270
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 6 cut(s) 413, 491, 527, 836, 1118, 1282
NlaIV GGNNCC 5 cut(s) 64, 155, 596, 613, 1143
NmuCI GTSAC 2 cut(s) 374, 880
NsbI TGCGCA 1 cut(s) 183
NspI RCATGY 1 cut(s) 1118
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 2 cut(s) 860, 1098
PfeI GAWTC 4 cut(s) 18, 782, 953, 1024
PfoI TCCNGGA 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 5 cut(s) 50, 240, 335, 349, 809
Ppu21I YACGTR 1 cut(s) 353
PpuMI RGGWCCY 1 cut(s) 595
PshBI ATTAAT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 2 cut(s) 607, 751
PspGI CCWGG 2 cut(s) 607, 751
PspN4I GGNNCC 5 cut(s) 64, 155, 596, 613, 1143
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 4 cut(s) 62, 63, 153, 595
PspPPI RGGWCCY 1 cut(s) 595
PsuI RGATCY 2 cut(s) 958, 972
RsaI GTAC 2 cut(s) 167, 1128
RsaNI GTAC 2 cut(s) 166, 1127
RseI CAYNNNNRTG 2 cut(s) 515, 528
SaqAI TTAA 4 cut(s) 624, 663, 993, 1077
SatI GCNGC 5 cut(s) 49, 239, 334, 348, 808
Sau3AI GATC 4 cut(s) 124, 958, 972, 1270
Sau96I GGNCC 4 cut(s) 62, 63, 153, 595
ScrFI CCNGG 3 cut(s) 170, 609, 753
SduI GDGCHC 2 cut(s) 66, 117
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 5 cut(s) 334, 437, 529, 1116, 1213
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 515, 528
Sse9I AATT 6 cut(s) 144, 257, 311, 388, 1074, 1130
SsiI CCGC 2 cut(s) 333, 799
SspI AATATT 1 cut(s) 1247
SspMI CTAG 1 cut(s) 1122
StyD4I CCNGG 3 cut(s) 168, 607, 751
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 574, 931
TaiI ACGT 2 cut(s) 355, 1201
TaqI TCGA 1 cut(s) 297
TasI AATT 6 cut(s) 144, 257, 311, 388, 1074, 1130
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 4 cut(s) 18, 782, 953, 1024
Tru1I TTAA 4 cut(s) 624, 663, 993, 1077
Tru9I TTAA 4 cut(s) 624, 663, 993, 1077
TseFI GTSAC 2 cut(s) 374, 880
TseI GCWGC 4 cut(s) 48, 238, 347, 807
Tsp45I GTSAC 2 cut(s) 374, 880
TspDTI ATGAA 4 cut(s) 92, 270, 1188, 1209
VpaK11BI GGWCC 1 cut(s) 595
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 2 cut(s) 144, 311
XceI RCATGY 1 cut(s) 1118
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 2 cut(s) 860, 1098
XspI CTAG 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.