Belongs to the histone deacetylase family. HD Type 1 subfamily
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44680 |
| fragaria_vesca | FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 |
| malus_domestica | MD11G1159400.v1.1 |
| prunus_persica | Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 |
| pyrus_communis | pycom03g09310 pycom11g13010 |
| rosa_chinensis | RchiOBHm_Chr7g0218461 |
| rosa_laevigata | RLG00000002371 |
| rosa_multiflora | Rmu_sc0001301.1_g000083 |
| rosa_roxburghii | Rroxscaffold_3G00240940 |
| rosa_rugosa | Rorug07G0177300 Rorug07G0177300 Rorug07G0177300 |
| rosa_samantha | Rh7AG318700 Rh7CG335700 |
| rosa_wichuraiana | Rw7G027090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 315 |
| AccI | GTMKAC | 2 cut(s) | 186, 838 |
| AccII | CGCG | 2 cut(s) | 890, 1371 |
| AccIII | TCCGGA | 1 cut(s) | 563 |
| AciI | CCGC | 2 cut(s) | 215, 287 |
| AclWI | GGATC | 3 cut(s) | 605, 1099, 1347 |
| AcoI | YGGCCR | 2 cut(s) | 68, 284 |
| AcsI | RAATTY | 4 cut(s) | 276, 443, 453, 992 |
| AcuI | CTGAAG | 1 cut(s) | 817 |
| AfaI | GTAC | 1 cut(s) | 1263 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 100, 746 |
| AgsI | TTSAA | 7 cut(s) | 141, 443, 493, 847, 946, 997, 1067 |
| AjnI | CCWGG | 2 cut(s) | 739, 883 |
| AluBI | AGCT | 8 cut(s) | 64, 90, 310, 329, 607, 677, 711, 831 |
| AluI | AGCT | 8 cut(s) | 64, 90, 310, 329, 607, 677, 711, 831 |
| Alw26I | GTCTC | 3 cut(s) | 866, 921, 1386 |
| AlwI | GGATC | 3 cut(s) | 605, 1099, 1347 |
| Ama87I | CYCGRG | 1 cut(s) | 624 |
| Aor13HI | TCCGGA | 1 cut(s) | 563 |
| AoxI | GGCC | 3 cut(s) | 68, 194, 284 |
| ApeKI | GCWGC | 2 cut(s) | 479, 939 |
| ApoI | RAATTY | 4 cut(s) | 276, 443, 453, 992 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 992 |
| AspLEI | GCGC | 5 cut(s) | 78, 106, 316, 890, 1371 |
| AspS9I | GGNCC | 1 cut(s) | 194 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 4 cut(s) | 28, 671, 709, 761 |
| AsuNHI | GCTAGC | 1 cut(s) | 827 |
| AvaI | CYCGRG | 1 cut(s) | 624 |
| BalI | TGGCCA | 1 cut(s) | 70 |
| BbvI | GCAGC | 2 cut(s) | 466, 926 |
| BccI | CCATC | 6 cut(s) | 243, 265, 656, 800, 806, 953 |
| BciT130I | CCWGG | 2 cut(s) | 741, 885 |
| BciVI | GTATCC | 2 cut(s) | 309, 1022 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 3 cut(s) | 866, 921, 1386 |
| BfaI | CTAG | 3 cut(s) | 87, 828, 1257 |
| BfmI | CTRYAG | 1 cut(s) | 123 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BfuI | GTATCC | 2 cut(s) | 309, 1022 |
| BisI | GCNGC | 3 cut(s) | 287, 480, 940 |
| BlsI | GCNGC | 3 cut(s) | 288, 481, 941 |
| Bme1390I | CCNGG | 3 cut(s) | 101, 741, 885 |
| BmeT110I | CYCGRG | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 1 cut(s) | 194 |
| BmiI | GGNNCC | 1 cut(s) | 1278 |
| BmrFI | CCNGG | 3 cut(s) | 101, 741, 885 |
| BmrI | ACTGGG | 1 cut(s) | 1080 |
| BmsI | GCATC | 5 cut(s) | 466, 569, 661, 1251, 1257 |
| BmtI | GCTAGC | 1 cut(s) | 831 |
| BmuI | ACTGGG | 1 cut(s) | 1080 |
| BpmI | CTGGAG | 3 cut(s) | 884, 945, 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 1335 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaAI | YACGTR | 1 cut(s) | 485 |
| BsaBI | GATNNNNATC | 2 cut(s) | 651, 1404 |
| BsaI | GGTCTC | 1 cut(s) | 921 |
| BsaJI | CCNNGG | 3 cut(s) | 71, 739, 861 |
| BsaWI | WCCGGW | 3 cut(s) | 115, 301, 563 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 100, 746 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 3 cut(s) | 901, 1014, 1075 |
| Bse8I | GATNNNNATC | 2 cut(s) | 651, 1404 |
| BseAI | TCCGGA | 1 cut(s) | 563 |
| BseBI | CCWGG | 2 cut(s) | 741, 885 |
| BseDI | CCNNGG | 3 cut(s) | 71, 739, 861 |
| BseGI | GGATG | 4 cut(s) | 112, 178, 560, 1242 |
| BseJI | GATNNNNATC | 2 cut(s) | 651, 1404 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 100, 746 |
| BseNI | ACTGG | 3 cut(s) | 901, 1014, 1075 |
| BseX3I | CGGCCG | 1 cut(s) | 284 |
| BseXI | GCAGC | 2 cut(s) | 466, 926 |
| BseYI | CCCAGC | 2 cut(s) | 369, 461 |
| BsgI | GTGCAG | 2 cut(s) | 332, 465 |
| Bsh1236I | CGCG | 2 cut(s) | 890, 1371 |
| Bsh1285I | CGRYCG | 1 cut(s) | 287 |
| BshFI | GGCC | 3 cut(s) | 70, 196, 286 |
| BsiEI | CGRYCG | 1 cut(s) | 287 |
| BsiHKCI | CYCGRG | 1 cut(s) | 624 |
| BsiSI | CCGG | 5 cut(s) | 101, 116, 220, 302, 564 |
| BslFI | GGGAC | 1 cut(s) | 785 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 100, 746 |
| BsmAI | GTCTC | 3 cut(s) | 866, 921, 1386 |
| BsmFI | GGGAC | 1 cut(s) | 785 |
| BsnI | GGCC | 3 cut(s) | 70, 196, 286 |
| Bso31I | GGTCTC | 1 cut(s) | 921 |
| BsoBI | CYCGRG | 1 cut(s) | 624 |
| Bsp13I | TCCGGA | 1 cut(s) | 563 |
| Bsp143I | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| BspACI | CCGC | 2 cut(s) | 215, 287 |
| BspANI | GGCC | 3 cut(s) | 70, 196, 286 |
| BspEI | TCCGGA | 1 cut(s) | 563 |
| BspFNI | CGCG | 2 cut(s) | 890, 1371 |
| BspLI | GGNNCC | 1 cut(s) | 1278 |
| BspMAI | CTGCAG | 1 cut(s) | 127 |
| BspOI | GCTAGC | 1 cut(s) | 831 |
| BspPI | GGATC | 3 cut(s) | 605, 1099, 1347 |
| BspTNI | GGTCTC | 1 cut(s) | 921 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 3 cut(s) | 901, 1014, 1075 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssECI | CCNNGG | 3 cut(s) | 71, 739, 861 |
| BssMI | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| BssT1I | CCWWGG | 2 cut(s) | 71, 861 |
| Bst2UI | CCWGG | 2 cut(s) | 741, 885 |
| Bst4CI | ACNGT | 4 cut(s) | 659, 706, 932, 1063 |
| BstBAI | YACGTR | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 829 |
| BstDEI | CTNAG | 1 cut(s) | 1202 |
| BstF5I | GGATG | 4 cut(s) | 112, 178, 560, 1242 |
| BstFNI | CGCG | 2 cut(s) | 890, 1371 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 5 cut(s) | 78, 106, 316, 890, 1371 |
| BstKTI | GATC | 5 cut(s) | 259, 600, 1107, 1342, 1408 |
| BstMAI | GTCTC | 3 cut(s) | 866, 921, 1386 |
| BstMBI | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| BstMCI | CGRYCG | 1 cut(s) | 287 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 96, 1366 |
| BstNI | CCWGG | 2 cut(s) | 741, 885 |
| BstNSI | RCATGY | 1 cut(s) | 1253 |
| BstSCI | CCNGG | 3 cut(s) | 99, 739, 883 |
| BstSFI | CTRYAG | 1 cut(s) | 123 |
| BstUI | CGCG | 2 cut(s) | 890, 1371 |
| BstV1I | GCAGC | 2 cut(s) | 466, 926 |
| BstX2I | RGATCY | 2 cut(s) | 597, 1104 |
| BstYI | RGATCY | 2 cut(s) | 597, 1104 |
| BstZI | CGGCCG | 1 cut(s) | 284 |
| BsuI | GTATCC | 2 cut(s) | 309, 1022 |
| BsuRI | GGCC | 3 cut(s) | 70, 196, 286 |
| BtsCI | GGATG | 4 cut(s) | 112, 178, 560, 1242 |
| BtsIMutI | CAGTG | 1 cut(s) | 908 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 829 |
| CfoI | GCGC | 5 cut(s) | 78, 106, 316, 890, 1371 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 1 cut(s) | 194 |
| CseI | GACGC | 2 cut(s) | 172, 833 |
| Csp6I | GTAC | 1 cut(s) | 1262 |
| CviAII | CATG | 6 cut(s) | 208, 542, 620, 965, 1250, 1414 |
| CviQI | GTAC | 1 cut(s) | 1262 |
| DdeI | CTNAG | 1 cut(s) | 1202 |
| DpnI | GATC | 5 cut(s) | 258, 599, 1106, 1341, 1407 |
| DpnII | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| EaeI | YGGCCR | 2 cut(s) | 68, 284 |
| EagI | CGGCCG | 1 cut(s) | 284 |
| EclXI | CGGCCG | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 2 cut(s) | 71, 861 |
| Eco31I | GGTCTC | 1 cut(s) | 921 |
| Eco52I | CGGCCG | 1 cut(s) | 284 |
| Eco57I | CTGAAG | 1 cut(s) | 817 |
| Eco88I | CYCGRG | 1 cut(s) | 624 |
| EcoRII | CCWGG | 2 cut(s) | 739, 883 |
| EcoT14I | CCWWGG | 2 cut(s) | 71, 861 |
| ErhI | CCWWGG | 2 cut(s) | 71, 861 |
| FaeI | CATG | 6 cut(s) | 211, 545, 623, 968, 1253, 1417 |
| FaqI | GGGAC | 1 cut(s) | 785 |
| FatI | CATG | 6 cut(s) | 207, 541, 619, 964, 1249, 1413 |
| FblI | GTMKAC | 2 cut(s) | 186, 838 |
| Fnu4HI | GCNGC | 3 cut(s) | 287, 480, 940 |
| FokI | GGATG | 4 cut(s) | 99, 185, 547, 1229 |
| Fsp4HI | GCNGC | 3 cut(s) | 287, 480, 940 |
| FspBI | CTAG | 3 cut(s) | 87, 828, 1257 |
| FspI | TGCGCA | 1 cut(s) | 315 |
| GlaI | GCGC | 5 cut(s) | 77, 105, 315, 889, 1370 |
| GluI | GCNGC | 3 cut(s) | 287, 480, 940 |
| GsaI | CCCAGC | 2 cut(s) | 373, 465 |
| GsuI | CTGGAG | 3 cut(s) | 884, 945, 1122 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 3 cut(s) | 70, 196, 286 |
| HapII | CCGG | 5 cut(s) | 101, 116, 220, 302, 564 |
| HgaI | GACGC | 2 cut(s) | 172, 833 |
| HhaI | GCGC | 5 cut(s) | 78, 106, 316, 890, 1371 |
| Hin1II | CATG | 6 cut(s) | 211, 545, 623, 968, 1253, 1417 |
| Hin6I | GCGC | 5 cut(s) | 76, 104, 314, 888, 1369 |
| HinP1I | GCGC | 5 cut(s) | 76, 104, 314, 888, 1369 |
| HindIII | AAGCTT | 1 cut(s) | 675 |
| HinfI | GANTC | 3 cut(s) | 914, 1085, 1156 |
| HpaII | CCGG | 5 cut(s) | 101, 116, 220, 302, 564 |
| HphI | GGTGA | 4 cut(s) | 28, 671, 709, 761 |
| Hpy166II | GTNNAC | 3 cut(s) | 187, 533, 839 |
| Hpy188I | TCNGA | 1 cut(s) | 1090 |
| Hpy188III | TCNNGA | 7 cut(s) | 382, 564, 1082, 1139, 1298, 1337, 1352 |
| Hpy8I | GTNNAC | 3 cut(s) | 187, 533, 839 |
| Hpy99I | CGWCG | 3 cut(s) | 170, 1376, 1379 |
| HpyAV | CCTTC | 5 cut(s) | 49, 67, 147, 770, 1382 |
| HpyCH4III | ACNGT | 4 cut(s) | 659, 706, 932, 1063 |
| HpyCH4IV | ACGT | 2 cut(s) | 484, 1333 |
| HpyCH4V | TGCA | 6 cut(s) | 125, 349, 482, 652, 1242, 1270 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 96, 1366 |
| HpyF3I | CTNAG | 1 cut(s) | 1202 |
| HpySE526I | ACGT | 2 cut(s) | 484, 1333 |
| Hsp92II | CATG | 6 cut(s) | 211, 545, 623, 968, 1253, 1417 |
| HspAI | GCGC | 5 cut(s) | 76, 104, 314, 888, 1369 |
| Kpn2I | TCCGGA | 1 cut(s) | 563 |
| Kzo9I | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| LmnI | GCTCC | 4 cut(s) | 307, 604, 908, 1258 |
| Lsp1109I | GCAGC | 2 cut(s) | 466, 926 |
| LweI | GCATC | 5 cut(s) | 466, 569, 661, 1251, 1257 |
| MaeI | CTAG | 3 cut(s) | 87, 828, 1257 |
| MaeII | ACGT | 2 cut(s) | 484, 1333 |
| MaeIII | GTNAC | 2 cut(s) | 572, 1012 |
| MalI | GATC | 5 cut(s) | 258, 599, 1106, 1341, 1407 |
| MboI | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| MboII | GAAGA | 6 cut(s) | 45, 425, 683, 1000, 1070, 1322 |
| MfeI | CAATTG | 1 cut(s) | 520 |
| MflI | RGATCY | 2 cut(s) | 597, 1104 |
| MlsI | TGGCCA | 1 cut(s) | 70 |
| MluCI | AATT | 7 cut(s) | 276, 317, 443, 453, 520, 816, 992 |
| MluNI | TGGCCA | 1 cut(s) | 70 |
| MmeI | TCCRAC | 2 cut(s) | 1037, 1270 |
| MnlI | CCTC | 8 cut(s) | 92, 104, 120, 257, 550, 1013, 1146, 1267 |
| Mox20I | TGGCCA | 1 cut(s) | 70 |
| MroI | TCCGGA | 1 cut(s) | 563 |
| MroXI | GAANNNNTTC | 1 cut(s) | 992 |
| MscI | TGGCCA | 1 cut(s) | 70 |
| MseI | TTAA | 5 cut(s) | 6, 23, 756, 978, 1212 |
| MslI | CAYNNNNRTG | 3 cut(s) | 647, 657, 660 |
| Msp20I | TGGCCA | 1 cut(s) | 70 |
| MspA1I | CMGCKG | 1 cut(s) | 329 |
| MspI | CCGG | 5 cut(s) | 101, 116, 220, 302, 564 |
| MspR9I | CCNGG | 3 cut(s) | 101, 741, 885 |
| MunI | CAATTG | 1 cut(s) | 520 |
| MvaI | CCWGG | 2 cut(s) | 741, 885 |
| MvnI | CGCG | 2 cut(s) | 890, 1371 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 96, 1366 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NdeII | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| NheI | GCTAGC | 1 cut(s) | 827 |
| NlaIII | CATG | 6 cut(s) | 211, 545, 623, 968, 1253, 1417 |
| NlaIV | GGNNCC | 1 cut(s) | 1278 |
| NsbI | TGCGCA | 1 cut(s) | 315 |
| NspI | RCATGY | 1 cut(s) | 1253 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1383 |
| PdmI | GAANNNNTTC | 1 cut(s) | 992 |
| PfeI | GAWTC | 3 cut(s) | 914, 1085, 1156 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PkrI | GCNGC | 3 cut(s) | 288, 481, 941 |
| Ppu21I | YACGTR | 1 cut(s) | 485 |
| Psp6I | CCWGG | 2 cut(s) | 739, 883 |
| PspFI | CCCAGC | 2 cut(s) | 369, 461 |
| PspGI | CCWGG | 2 cut(s) | 739, 883 |
| PspN4I | GGNNCC | 1 cut(s) | 1278 |
| PspPI | GGNCC | 1 cut(s) | 194 |
| PstI | CTGCAG | 1 cut(s) | 127 |
| PsuI | RGATCY | 2 cut(s) | 597, 1104 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| PvuII | CAGCTG | 1 cut(s) | 329 |
| RsaI | GTAC | 1 cut(s) | 1263 |
| RsaNI | GTAC | 1 cut(s) | 1262 |
| RseI | CAYNNNNRTG | 3 cut(s) | 647, 657, 660 |
| SaqAI | TTAA | 5 cut(s) | 6, 23, 756, 978, 1212 |
| SatI | GCNGC | 3 cut(s) | 287, 480, 940 |
| Sau3AI | GATC | 5 cut(s) | 256, 597, 1104, 1339, 1405 |
| Sau96I | GGNCC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 3 cut(s) | 101, 741, 885 |
| SfaNI | GCATC | 5 cut(s) | 466, 569, 661, 1251, 1257 |
| SfcI | CTRYAG | 1 cut(s) | 123 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 647, 657, 660 |
| SmlI | CTYRAG | 1 cut(s) | 1350 |
| SmoI | CTYRAG | 1 cut(s) | 1350 |
| Sse9I | AATT | 7 cut(s) | 276, 317, 443, 453, 520, 816, 992 |
| SsiI | CCGC | 2 cut(s) | 215, 287 |
| SspI | AATATT | 1 cut(s) | 1382 |
| SspMI | CTAG | 3 cut(s) | 87, 828, 1257 |
| StyD4I | CCNGG | 3 cut(s) | 99, 739, 883 |
| StyI | CCWWGG | 2 cut(s) | 71, 861 |
| TaaI | ACNGT | 4 cut(s) | 659, 706, 932, 1063 |
| TaiI | ACGT | 2 cut(s) | 487, 1336 |
| TaqI | TCGA | 2 cut(s) | 60, 383 |
| TasI | AATT | 7 cut(s) | 276, 317, 443, 453, 520, 816, 992 |
| TauI | GCSGC | 1 cut(s) | 289 |
| TfiI | GAWTC | 3 cut(s) | 914, 1085, 1156 |
| Tru1I | TTAA | 5 cut(s) | 6, 23, 756, 978, 1212 |
| Tru9I | TTAA | 5 cut(s) | 6, 23, 756, 978, 1212 |
| TscAI | CASTG | 1 cut(s) | 908 |
| TseI | GCWGC | 2 cut(s) | 479, 939 |
| TspDTI | ATGAA | 5 cut(s) | 224, 402, 704, 1323, 1344 |
| TspRI | CASTG | 1 cut(s) | 908 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| XapI | RAATTY | 4 cut(s) | 276, 443, 453, 992 |
| XceI | RCATGY | 1 cut(s) | 1253 |
| XmiI | GTMKAC | 2 cut(s) | 186, 838 |
| XmnI | GAANNNNTTC | 1 cut(s) | 992 |
| XspI | CTAG | 3 cut(s) | 87, 828, 1257 |