pycom03g09310

Belongs to the histone deacetylase family. HD Type 1 subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
7804072 .. 7811533
7462 bp
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UTR
Exon/CDS
Intron
pycom03g09310.5

Sequence Viewer

Length: 1428 bp
ATGCTTAAAAGATTGGGGATATTAAGTAGCATTTTCACCTTCTCCCACTTTTCTTCCTTCGAGCTGTGGCCAAGGCGCAACCTCACTAGCTACCTCTGCCCGGCGCTTCCTCATCCGGTTTCTGCAGAAAAAATGCCTTCAAAGGATAAAATCGCCTATTTTTACGACGGGGATGTGGGTAGCGTCTACTTTGGGCCGAACCACCCCATGAAACCGCACCGGCTATGTATGACCCATCATCTCGTCCTCTCCTATGATCTCCACAAAAAGATGGAAATTTATCGGCCGCATAAGGCGTATCCGGTGGAGCTTGCGCAATTCCATTCAGCTGACTATGTTGAGTTTCTGCACAGGATTACGCCCGACACCCAGCACTTGTTCTCGAATGAAATAGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTTGATAACTTATTTGAATTTTGTCAAATTTATGCTGGGGGAACAATAGATGCTGCACGTAGGTTGAACAATAAACTTTGTGATATTGCTATCAATTGGGCTGGTGGACTACACCATGCCAAAAAGTGTGAGGCATCCGGATTTTGTTACATCAATGACTTGGTCTTGGGGATCTTGGAGCTTCTAAAACATCATGCCCGAGTATTGTATATTGACATAGATGTGCATCACGGTGATGGTGTAGAAGAAGCTTTCTATTTTACTGATAGGGTGATGACTGTTAGCTTTCATAAGTTTGGGGATTTGTTTTTCCCAGGAACAGGTGATGTTAAGGAAGTAGGAGAAAGAGAAGGCAAGTTTTATGCCATCAATGTCCCACTAAAAGATGGAATTGATGACGCTAGCTTCAGTAGACTTTTCAATACTATTATTTCCAAGGTTGTTGAGACATATCTACCAGGCGCGATAGTTCTCCAGTGTGGAGCAGATTCTCTTGCTGGAGACCGTTTGGGCTGCTTCAATCTCTCCATTGATGGTCATGCTGAATGTGTTAAGTTTGTGAAGAAATTCAATATACCCTTACTGGTTACAGGAGGTGGGGGATACACGAAAGAGAATGTTGCTCGGTGTTGGACTGTTGAAACTGGGGTTCTTCTTGATTCAGAACTTCCCAATGAGATCCCAGATAACGAGTATATCAAGTATTTTTCTCCAGACTGCTCGTTGAGGATTCCAAGTGGGCATATACAGGAGAACCTAAATAGTAAATCGTATCTTAGCACGATTAAAATACAAGTCTTGGAAAATCTGCGTTGCATCCAACATGCTCCTAGCGTACAGATGCAAGAGGTTCCACCTGATTTCTATATTCCCGACTTTGATGAAGATGAGCAGAACCCTGATGAACGTCTGGATCAGCACACTCAAGACAGGCACATTCAGCGCGACGACGAATATTACGAAGGAGACAACGATAACGATCACAACATGGAAGATATGTAA

Protein Analysis

476

Amino Acids

54.2

Weight (kDa)

5.29

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AccI GTMKAC 2 cut(s) 186, 838
AccII CGCG 2 cut(s) 890, 1371
AccIII TCCGGA 1 cut(s) 563
AciI CCGC 2 cut(s) 215, 287
AclWI GGATC 3 cut(s) 605, 1099, 1347
AcoI YGGCCR 2 cut(s) 68, 284
AcsI RAATTY 4 cut(s) 276, 443, 453, 992
AcuI CTGAAG 1 cut(s) 817
AfaI GTAC 1 cut(s) 1263
AfiI CCNNNNNNNGG 2 cut(s) 100, 746
AgsI TTSAA 7 cut(s) 141, 443, 493, 847, 946, 997, 1067
AjnI CCWGG 2 cut(s) 739, 883
AluBI AGCT 8 cut(s) 64, 90, 310, 329, 607, 677, 711, 831
AluI AGCT 8 cut(s) 64, 90, 310, 329, 607, 677, 711, 831
Alw26I GTCTC 3 cut(s) 866, 921, 1386
AlwI GGATC 3 cut(s) 605, 1099, 1347
Ama87I CYCGRG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 563
AoxI GGCC 3 cut(s) 68, 194, 284
ApeKI GCWGC 2 cut(s) 479, 939
ApoI RAATTY 4 cut(s) 276, 443, 453, 992
Asp700I GAANNNNTTC 1 cut(s) 992
AspLEI GCGC 5 cut(s) 78, 106, 316, 890, 1371
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 4 cut(s) 28, 671, 709, 761
AsuNHI GCTAGC 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 624
BalI TGGCCA 1 cut(s) 70
BbvI GCAGC 2 cut(s) 466, 926
BccI CCATC 6 cut(s) 243, 265, 656, 800, 806, 953
BciT130I CCWGG 2 cut(s) 741, 885
BciVI GTATCC 2 cut(s) 309, 1022
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 866, 921, 1386
BfaI CTAG 3 cut(s) 87, 828, 1257
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 107
BfuI GTATCC 2 cut(s) 309, 1022
BisI GCNGC 3 cut(s) 287, 480, 940
BlsI GCNGC 3 cut(s) 288, 481, 941
Bme1390I CCNGG 3 cut(s) 101, 741, 885
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 1278
BmrFI CCNGG 3 cut(s) 101, 741, 885
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 5 cut(s) 466, 569, 661, 1251, 1257
BmtI GCTAGC 1 cut(s) 831
BmuI ACTGGG 1 cut(s) 1080
BpmI CTGGAG 3 cut(s) 884, 945, 1122
BpuEI CTTGAG 1 cut(s) 1335
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 485
BsaBI GATNNNNATC 2 cut(s) 651, 1404
BsaI GGTCTC 1 cut(s) 921
BsaJI CCNNGG 3 cut(s) 71, 739, 861
BsaWI WCCGGW 3 cut(s) 115, 301, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 746
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 3 cut(s) 901, 1014, 1075
Bse8I GATNNNNATC 2 cut(s) 651, 1404
BseAI TCCGGA 1 cut(s) 563
BseBI CCWGG 2 cut(s) 741, 885
BseDI CCNNGG 3 cut(s) 71, 739, 861
BseGI GGATG 4 cut(s) 112, 178, 560, 1242
BseJI GATNNNNATC 2 cut(s) 651, 1404
BseLI CCNNNNNNNGG 2 cut(s) 100, 746
BseNI ACTGG 3 cut(s) 901, 1014, 1075
BseX3I CGGCCG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 466, 926
BseYI CCCAGC 2 cut(s) 369, 461
BsgI GTGCAG 2 cut(s) 332, 465
Bsh1236I CGCG 2 cut(s) 890, 1371
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 3 cut(s) 70, 196, 286
BsiEI CGRYCG 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 5 cut(s) 101, 116, 220, 302, 564
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 2 cut(s) 100, 746
BsmAI GTCTC 3 cut(s) 866, 921, 1386
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 3 cut(s) 70, 196, 286
Bso31I GGTCTC 1 cut(s) 921
BsoBI CYCGRG 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 563
Bsp143I GATC 5 cut(s) 256, 597, 1104, 1339, 1405
BspACI CCGC 2 cut(s) 215, 287
BspANI GGCC 3 cut(s) 70, 196, 286
BspEI TCCGGA 1 cut(s) 563
BspFNI CGCG 2 cut(s) 890, 1371
BspLI GGNNCC 1 cut(s) 1278
BspMAI CTGCAG 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 831
BspPI GGATC 3 cut(s) 605, 1099, 1347
BspTNI GGTCTC 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 3 cut(s) 901, 1014, 1075
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 71, 739, 861
BssMI GATC 5 cut(s) 256, 597, 1104, 1339, 1405
BssT1I CCWWGG 2 cut(s) 71, 861
Bst2UI CCWGG 2 cut(s) 741, 885
Bst4CI ACNGT 4 cut(s) 659, 706, 932, 1063
BstBAI YACGTR 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 312, 829
BstDEI CTNAG 1 cut(s) 1202
BstF5I GGATG 4 cut(s) 112, 178, 560, 1242
BstFNI CGCG 2 cut(s) 890, 1371
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 5 cut(s) 78, 106, 316, 890, 1371
BstKTI GATC 5 cut(s) 259, 600, 1107, 1342, 1408
BstMAI GTCTC 3 cut(s) 866, 921, 1386
BstMBI GATC 5 cut(s) 256, 597, 1104, 1339, 1405
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 96, 1366
BstNI CCWGG 2 cut(s) 741, 885
BstNSI RCATGY 1 cut(s) 1253
BstSCI CCNGG 3 cut(s) 99, 739, 883
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 2 cut(s) 890, 1371
BstV1I GCAGC 2 cut(s) 466, 926
BstX2I RGATCY 2 cut(s) 597, 1104
BstYI RGATCY 2 cut(s) 597, 1104
BstZI CGGCCG 1 cut(s) 284
BsuI GTATCC 2 cut(s) 309, 1022
BsuRI GGCC 3 cut(s) 70, 196, 286
BtsCI GGATG 4 cut(s) 112, 178, 560, 1242
BtsIMutI CAGTG 1 cut(s) 908
Cac8I GCNNGC 2 cut(s) 312, 829
CfoI GCGC 5 cut(s) 78, 106, 316, 890, 1371
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 2 cut(s) 172, 833
Csp6I GTAC 1 cut(s) 1262
CviAII CATG 6 cut(s) 208, 542, 620, 965, 1250, 1414
CviQI GTAC 1 cut(s) 1262
DdeI CTNAG 1 cut(s) 1202
DpnI GATC 5 cut(s) 258, 599, 1106, 1341, 1407
DpnII GATC 5 cut(s) 256, 597, 1104, 1339, 1405
EaeI YGGCCR 2 cut(s) 68, 284
EagI CGGCCG 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 71, 861
Eco31I GGTCTC 1 cut(s) 921
Eco52I CGGCCG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 817
Eco88I CYCGRG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 739, 883
EcoT14I CCWWGG 2 cut(s) 71, 861
ErhI CCWWGG 2 cut(s) 71, 861
FaeI CATG 6 cut(s) 211, 545, 623, 968, 1253, 1417
FaqI GGGAC 1 cut(s) 785
FatI CATG 6 cut(s) 207, 541, 619, 964, 1249, 1413
FblI GTMKAC 2 cut(s) 186, 838
Fnu4HI GCNGC 3 cut(s) 287, 480, 940
FokI GGATG 4 cut(s) 99, 185, 547, 1229
Fsp4HI GCNGC 3 cut(s) 287, 480, 940
FspBI CTAG 3 cut(s) 87, 828, 1257
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 5 cut(s) 77, 105, 315, 889, 1370
GluI GCNGC 3 cut(s) 287, 480, 940
GsaI CCCAGC 2 cut(s) 373, 465
GsuI CTGGAG 3 cut(s) 884, 945, 1122
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 3 cut(s) 70, 196, 286
HapII CCGG 5 cut(s) 101, 116, 220, 302, 564
HgaI GACGC 2 cut(s) 172, 833
HhaI GCGC 5 cut(s) 78, 106, 316, 890, 1371
Hin1II CATG 6 cut(s) 211, 545, 623, 968, 1253, 1417
Hin6I GCGC 5 cut(s) 76, 104, 314, 888, 1369
HinP1I GCGC 5 cut(s) 76, 104, 314, 888, 1369
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 3 cut(s) 914, 1085, 1156
HpaII CCGG 5 cut(s) 101, 116, 220, 302, 564
HphI GGTGA 4 cut(s) 28, 671, 709, 761
Hpy166II GTNNAC 3 cut(s) 187, 533, 839
Hpy188I TCNGA 1 cut(s) 1090
Hpy188III TCNNGA 7 cut(s) 382, 564, 1082, 1139, 1298, 1337, 1352
Hpy8I GTNNAC 3 cut(s) 187, 533, 839
Hpy99I CGWCG 3 cut(s) 170, 1376, 1379
HpyAV CCTTC 5 cut(s) 49, 67, 147, 770, 1382
HpyCH4III ACNGT 4 cut(s) 659, 706, 932, 1063
HpyCH4IV ACGT 2 cut(s) 484, 1333
HpyCH4V TGCA 6 cut(s) 125, 349, 482, 652, 1242, 1270
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 1366
HpyF3I CTNAG 1 cut(s) 1202
HpySE526I ACGT 2 cut(s) 484, 1333
Hsp92II CATG 6 cut(s) 211, 545, 623, 968, 1253, 1417
HspAI GCGC 5 cut(s) 76, 104, 314, 888, 1369
Kpn2I TCCGGA 1 cut(s) 563
Kzo9I GATC 5 cut(s) 256, 597, 1104, 1339, 1405
LmnI GCTCC 4 cut(s) 307, 604, 908, 1258
Lsp1109I GCAGC 2 cut(s) 466, 926
LweI GCATC 5 cut(s) 466, 569, 661, 1251, 1257
MaeI CTAG 3 cut(s) 87, 828, 1257
MaeII ACGT 2 cut(s) 484, 1333
MaeIII GTNAC 2 cut(s) 572, 1012
MalI GATC 5 cut(s) 258, 599, 1106, 1341, 1407
MboI GATC 5 cut(s) 256, 597, 1104, 1339, 1405
MboII GAAGA 6 cut(s) 45, 425, 683, 1000, 1070, 1322
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 2 cut(s) 597, 1104
MlsI TGGCCA 1 cut(s) 70
MluCI AATT 7 cut(s) 276, 317, 443, 453, 520, 816, 992
MluNI TGGCCA 1 cut(s) 70
MmeI TCCRAC 2 cut(s) 1037, 1270
MnlI CCTC 8 cut(s) 92, 104, 120, 257, 550, 1013, 1146, 1267
Mox20I TGGCCA 1 cut(s) 70
MroI TCCGGA 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 992
MscI TGGCCA 1 cut(s) 70
MseI TTAA 5 cut(s) 6, 23, 756, 978, 1212
MslI CAYNNNNRTG 3 cut(s) 647, 657, 660
Msp20I TGGCCA 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 5 cut(s) 101, 116, 220, 302, 564
MspR9I CCNGG 3 cut(s) 101, 741, 885
MunI CAATTG 1 cut(s) 520
MvaI CCWGG 2 cut(s) 741, 885
MvnI CGCG 2 cut(s) 890, 1371
MwoI GCNNNNNNNGC 2 cut(s) 96, 1366
NciI CCSGG 1 cut(s) 101
NdeII GATC 5 cut(s) 256, 597, 1104, 1339, 1405
NheI GCTAGC 1 cut(s) 827
NlaIII CATG 6 cut(s) 211, 545, 623, 968, 1253, 1417
NlaIV GGNNCC 1 cut(s) 1278
NsbI TGCGCA 1 cut(s) 315
NspI RCATGY 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 1383
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 3 cut(s) 914, 1085, 1156
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 3 cut(s) 288, 481, 941
Ppu21I YACGTR 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 739, 883
PspFI CCCAGC 2 cut(s) 369, 461
PspGI CCWGG 2 cut(s) 739, 883
PspN4I GGNNCC 1 cut(s) 1278
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 597, 1104
PsyI GACNNNGTC 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 1263
RsaNI GTAC 1 cut(s) 1262
RseI CAYNNNNRTG 3 cut(s) 647, 657, 660
SaqAI TTAA 5 cut(s) 6, 23, 756, 978, 1212
SatI GCNGC 3 cut(s) 287, 480, 940
Sau3AI GATC 5 cut(s) 256, 597, 1104, 1339, 1405
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 101, 741, 885
SfaNI GCATC 5 cut(s) 466, 569, 661, 1251, 1257
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 3 cut(s) 647, 657, 660
SmlI CTYRAG 1 cut(s) 1350
SmoI CTYRAG 1 cut(s) 1350
Sse9I AATT 7 cut(s) 276, 317, 443, 453, 520, 816, 992
SsiI CCGC 2 cut(s) 215, 287
SspI AATATT 1 cut(s) 1382
SspMI CTAG 3 cut(s) 87, 828, 1257
StyD4I CCNGG 3 cut(s) 99, 739, 883
StyI CCWWGG 2 cut(s) 71, 861
TaaI ACNGT 4 cut(s) 659, 706, 932, 1063
TaiI ACGT 2 cut(s) 487, 1336
TaqI TCGA 2 cut(s) 60, 383
TasI AATT 7 cut(s) 276, 317, 443, 453, 520, 816, 992
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 914, 1085, 1156
Tru1I TTAA 5 cut(s) 6, 23, 756, 978, 1212
Tru9I TTAA 5 cut(s) 6, 23, 756, 978, 1212
TscAI CASTG 1 cut(s) 908
TseI GCWGC 2 cut(s) 479, 939
TspDTI ATGAA 5 cut(s) 224, 402, 704, 1323, 1344
TspRI CASTG 1 cut(s) 908
Tth111I GACNNNGTC 1 cut(s) 587
XapI RAATTY 4 cut(s) 276, 443, 453, 992
XceI RCATGY 1 cut(s) 1253
XmiI GTMKAC 2 cut(s) 186, 838
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 3 cut(s) 87, 828, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.