Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007853

Physical Location & Seq

Genomic Coordinates Reverse (-)

34725631 .. 34732481

Gene Structure 6851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCGCTCAAAGGACAGAATCTCCTACTTCTATGACGGGGATGTGGGCAGCGTCTACTTCGGGCCCAACCATCCTATGAAGCCACACCGGCTATGTATGACCCATCACCTTGTGCTCTCATATGATCTCCACAAGAAGATGGAAATTTATCGGCCGCACAAGGCATATCCGGTGGAGCTTGCGCAATTCCATTCCGCTGACTATGTTGAGTTTCTCCACCGGATTACCCCTGACAAGCAGCATTTGTTCTCCATTGAATTGGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTCGATAACTTGTTTGAATTCTGTCAAATTTATGCTGGTGGCACAATAGATGCTGCACGTAGGTTGAACAATAAGCTCTGTGACATTGCTATAAACTGGGCTGGTGGACTACACCATGCGAAAAAGTGTGGGGCATCTGGATTTTGTTACATCAATGACTTGGTCTTGGGTATCTTGGAGCTTCTAAAACATCATGCCCGAGTATTATACATTGACATAGATGTGCATCATGGTGATGGAGTAGAGGAAGCTTTTTATTTTACTGATAGGGTAATGACTGTTAGTTTTCACAAGTTTGGGGATCTGTTTTTTCCAGGAACAGGTGATGTTAAGGAAATAGGAGAAAGGGAAGGCAAGTTTTATGCCATCAATGTTCCACTAAAGAATGGAATAGATGATACTAGCTTCACCAGACTTTTCAAGACTATTATTTCCAAGGTTATTGAAACTTATCAACCAGGTGCAATAGTTCTCCAATGTGGGGCAGATTCGCTTGCTGGAGACCGCTTGGGCTGCTTCAATCTCTCCATTGATGGTCATGCTGAATGTGTTAGGTTTGTGAAGAAGTTCAATATACCCTTACTGGTCACAGGAGGTGGTGGATACACAAAAGAGAATGTTGCTCGGTGTTGGACTGTTGAAACTGGAGTTCTTCTGGATTCAGATCTTCCCAATGAGATCCCAGAAAATGAGTATATTAAGTATTTTTCGCCAGAGTTCTCGTTGAGGATTCCTAATGGCCATATAGAAAACCTAAATAGTAAATCATATCTCAGCACAATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCTAGTGTACAATTGCAAGAGGTTCCACCTGATTTTTATATTCCAGATTTTGATGAAGATGAGCAGAACCCTGATGAACGTGTGCATCAGAATACCCAAGACAAGCACATTCAGCGTGATGACGAATATTATGACGGTGACAATGATAACGATCACAACGTGGAAGATGCACAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010029 GO:0010187 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0065007 GO:0070932 GO:0071704 GO:0071840 GO:0097159 GO:0098732 GO:1900055 GO:1900140 GO:1901363 GO:1901564 GO:1990619 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

432

Amino Acids

49.38

Weight (kDa)

5.33

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	24 - 314	3e-86	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44680
fragaria_vesca	FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 FvH4_5g27310
malus_domestica	MD11G1159400.v1.1
prunus_persica	Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1
pyrus_communis	pycom03g09310 pycom11g13010
rosa_chinensis	RchiOBHm_Chr7g0218461
rosa_laevigata	RLG00000002371
rosa_multiflora	Rmu_sc0001301.1_g000083
rosa_roxburghii	Rroxscaffold_3G00240940
rosa_rugosa	Rorug07G0177300 Rorug07G0177300 Rorug07G0177300
rosa_samantha	Rh7AG318700 Rh7CG335700
rosa_wichuraiana	Rw7G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	3 cut(s)	155, 195, 799
AclWI	GGATC	2 cut(s)	603, 967
AcoI	YGGCCR	2 cut(s)	152, 1033
AcsI	RAATTY	3 cut(s)	144, 311, 321
AdeI	CACNNNGTG	2 cut(s)	112, 1279
AfaI	GTAC	1 cut(s)	1128
AfiI	CCNNNNNNNGG	2 cut(s)	614, 775
AflIII	ACRYGT	1 cut(s)	1198
AgsI	TTSAA	8 cut(s)	257, 311, 361, 715, 740, 814, 865, 935
AjnI	CCWGG	2 cut(s)	607, 751
AluBI	AGCT	5 cut(s)	178, 370, 475, 545, 699
AluI	AGCT	5 cut(s)	178, 370, 475, 545, 699
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	2 cut(s)	603, 967
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	3 cut(s)	62, 152, 1033
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	48, 238, 347, 807
ApoI	RAATTY	3 cut(s)	144, 311, 321
Asp700I	GAANNNNTTC	2 cut(s)	860, 1098
AspLEI	GCGC	2 cut(s)	6, 184
AspS9I	GGNCC	2 cut(s)	62, 63
AsuHPI	GGTGA	5 cut(s)	98, 539, 629, 694, 1268
AvaI	CYCGRG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	1035
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	60, 250, 334, 794
BccI	CCATC	6 cut(s)	78, 111, 133, 524, 668, 821
BciT130I	CCWGG	2 cut(s)	609, 753
BciVI	GTATCC	1 cut(s)	890
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	696, 1122
BfuI	GTATCC	1 cut(s)	890
BglI	GCCNNNNNGGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	5 cut(s)	49, 155, 239, 348, 808
BlsI	GCNGC	5 cut(s)	50, 156, 240, 349, 809
Bme1390I	CCNGG	2 cut(s)	609, 753
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	62, 63
BmiI	GGNNCC	2 cut(s)	64, 1143
BmrFI	CCNGG	2 cut(s)	609, 753
BmrI	ACTGGG	1 cut(s)	400
BmsI	GCATC	6 cut(s)	334, 437, 529, 1116, 1213, 1276
BmuI	ACTGGG	1 cut(s)	400
BpmI	CTGGAG	2 cut(s)	813, 960
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	3 cut(s)	519, 957, 1269
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	729
BsaWI	WCCGGW	2 cut(s)	169, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 775
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	3 cut(s)	395, 882, 943
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	3 cut(s)	519, 957, 1269
BseBI	CCWGG	2 cut(s)	609, 753
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	3 cut(s)	46, 70, 1107
BseJI	GATNNNNATC	3 cut(s)	519, 957, 1269
BseLI	CCNNNNNNNGG	2 cut(s)	614, 775
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	1081
BseNI	ACTGG	3 cut(s)	395, 882, 943
BseSI	GKGCMC	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	60, 250, 334, 794
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	64, 154, 1035
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	88, 170, 220
BslI	CCNNNNNNNGG	2 cut(s)	614, 775
BsmAI	GTCTC	1 cut(s)	789
BsnI	GGCC	3 cut(s)	64, 154, 1035
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	492
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	66, 117
Bsp1407I	TGTACA	1 cut(s)	1126
Bsp143I	GATC	5 cut(s)	124, 595, 958, 972, 1270
BspACI	CCGC	3 cut(s)	155, 195, 799
BspANI	GGCC	3 cut(s)	64, 154, 1035
BspCNI	CTCAG	1 cut(s)	1080
BspLI	GGNNCC	2 cut(s)	64, 1143
BspPI	GGATC	2 cut(s)	603, 967
BspTNI	GGTCTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	1126
BsrI	ACTGG	3 cut(s)	395, 882, 943
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	5 cut(s)	124, 595, 958, 972, 1270
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	2 cut(s)	609, 753
Bst4CI	ACNGT	3 cut(s)	574, 931, 1256
BstAUI	TGTACA	1 cut(s)	1126
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	180, 789
BstDEI	CTNAG	1 cut(s)	1067
BstF5I	GGATG	3 cut(s)	46, 70, 1107
BstHHI	GCGC	2 cut(s)	6, 184
BstKTI	GATC	5 cut(s)	127, 598, 961, 975, 1273
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	5 cut(s)	124, 595, 958, 972, 1270
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 807, 1231
BstNI	CCWGG	2 cut(s)	609, 753
BstNSI	RCATGY	1 cut(s)	1118
BstSCI	CCNGG	2 cut(s)	607, 751
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	60, 250, 334, 794
BstX2I	RGATCY	3 cut(s)	595, 958, 972
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	3 cut(s)	595, 958, 972
BstZI	CGGCCG	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	890
BsuRI	GGCC	3 cut(s)	64, 154, 1035
BtsCI	GGATG	3 cut(s)	46, 70, 1107
Cac8I	GCNNGC	2 cut(s)	180, 789
CfoI	GCGC	2 cut(s)	6, 184
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	62, 63
CseI	GACGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	1127
CviAII	CATG	5 cut(s)	410, 488, 524, 833, 1115
CviQI	GTAC	1 cut(s)	1127
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	5 cut(s)	126, 597, 960, 974, 1272
DpnII	GATC	5 cut(s)	124, 595, 958, 972, 1270
DraIII	CACNNNGTG	2 cut(s)	112, 1279
EaeI	YGGCCR	2 cut(s)	152, 1033
EagI	CGGCCG	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	789
Eco52I	CGGCCG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	607, 751
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	5 cut(s)	413, 491, 527, 836, 1118
FatI	CATG	5 cut(s)	409, 487, 523, 832, 1114
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	49, 155, 239, 348, 808
FokI	GGATG	3 cut(s)	53, 57, 1094
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	49, 155, 239, 348, 808
FspBI	CTAG	2 cut(s)	696, 1122
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	2 cut(s)	5, 183
GluI	GCNGC	5 cut(s)	49, 155, 239, 348, 808
GsuI	CTGGAG	2 cut(s)	813, 960
HaeIII	GGCC	3 cut(s)	64, 154, 1035
HapII	CCGG	3 cut(s)	88, 170, 220
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	6, 184
Hin1II	CATG	5 cut(s)	413, 491, 527, 836, 1118
Hin6I	GCGC	2 cut(s)	4, 182
HinP1I	GCGC	2 cut(s)	4, 182
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	4 cut(s)	18, 782, 953, 1024
HpaII	CCGG	3 cut(s)	88, 170, 220
HphI	GGTGA	5 cut(s)	98, 539, 629, 694, 1268
Hpy166II	GTNNAC	3 cut(s)	55, 401, 1127
Hpy188I	TCNGA	2 cut(s)	958, 1209
Hpy188III	TCNNGA	4 cut(s)	432, 715, 950, 1163
Hpy8I	GTNNAC	3 cut(s)	55, 401, 1127
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	3 cut(s)	574, 931, 1256
HpyCH4IV	ACGT	3 cut(s)	352, 1198, 1278
HpyCH4V	TGCA	8 cut(s)	350, 520, 758, 1084, 1107, 1135, 1204, 1289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 807, 1231
HpyF3I	CTNAG	1 cut(s)	1067
HpySE526I	ACGT	3 cut(s)	352, 1198, 1278
Hsp92II	CATG	5 cut(s)	413, 491, 527, 836, 1118
HspAI	GCGC	2 cut(s)	4, 182
Kzo9I	GATC	5 cut(s)	124, 595, 958, 972, 1270
LmnI	GCTCC	3 cut(s)	175, 472, 1123
Lsp1109I	GCAGC	4 cut(s)	60, 250, 334, 794
LweI	GCATC	6 cut(s)	334, 437, 529, 1116, 1213, 1276
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	2 cut(s)	696, 1122
MaeII	ACGT	3 cut(s)	352, 1198, 1278
MaeIII	GTNAC	4 cut(s)	374, 440, 880, 1256
MalI	GATC	5 cut(s)	126, 597, 960, 974, 1272
MboI	GATC	5 cut(s)	124, 595, 958, 972, 1270
MboII	GAAGA	8 cut(s)	148, 293, 868, 938, 953, 1091, 1187, 1295
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	3 cut(s)	595, 958, 972
MhlI	GDGCHC	2 cut(s)	66, 117
MlsI	TGGCCA	1 cut(s)	1035
MluCI	AATT	8 cut(s)	144, 185, 257, 311, 321, 1074, 1130, 1294
MluNI	TGGCCA	1 cut(s)	1035
MmeI	TCCRAC	2 cut(s)	905, 1135
MnlI	CCTC	4 cut(s)	532, 881, 1014, 1132
Mox20I	TGGCCA	1 cut(s)	1035
MroXI	GAANNNNTTC	2 cut(s)	860, 1098
MscI	TGGCCA	1 cut(s)	1035
MseI	TTAA	4 cut(s)	624, 993, 1077, 1297
MslI	CAYNNNNRTG	3 cut(s)	515, 525, 528
Msp20I	TGGCCA	1 cut(s)	1035
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	88, 170, 220
MspR9I	CCNGG	2 cut(s)	609, 753
MunI	CAATTG	1 cut(s)	1130
MvaI	CCWGG	2 cut(s)	609, 753
MwoI	GCNNNNNNNGC	3 cut(s)	88, 807, 1231
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	5 cut(s)	124, 595, 958, 972, 1270
NlaIII	CATG	5 cut(s)	413, 491, 527, 836, 1118
NlaIV	GGNNCC	2 cut(s)	64, 1143
NmuCI	GTSAC	3 cut(s)	374, 880, 1256
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	1275
PdmI	GAANNNNTTC	2 cut(s)	860, 1098
PfeI	GAWTC	4 cut(s)	18, 782, 953, 1024
PflFI	GACNNNGTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	5 cut(s)	50, 156, 240, 349, 809
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	607, 751
PspGI	CCWGG	2 cut(s)	607, 751
PspN4I	GGNNCC	2 cut(s)	64, 1143
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	62, 63
PsuI	RGATCY	3 cut(s)	595, 958, 972
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	1 cut(s)	1128
RsaNI	GTAC	1 cut(s)	1127
RseI	CAYNNNNRTG	3 cut(s)	515, 525, 528
SaqAI	TTAA	4 cut(s)	624, 993, 1077, 1297
SatI	GCNGC	5 cut(s)	49, 155, 239, 348, 808
Sau3AI	GATC	5 cut(s)	124, 595, 958, 972, 1270
Sau96I	GGNCC	2 cut(s)	62, 63
ScrFI	CCNGG	2 cut(s)	609, 753
SduI	GDGCHC	2 cut(s)	66, 117
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	6 cut(s)	334, 437, 529, 1116, 1213, 1276
SmiMI	CAYNNNNRTG	3 cut(s)	515, 525, 528
Sse9I	AATT	8 cut(s)	144, 185, 257, 311, 321, 1074, 1130, 1294
SsiI	CCGC	3 cut(s)	155, 195, 799
SspI	AATATT	1 cut(s)	1247
SspMI	CTAG	2 cut(s)	696, 1122
StyD4I	CCNGG	2 cut(s)	607, 751
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	3 cut(s)	574, 931, 1256
TaiI	ACGT	3 cut(s)	355, 1201, 1281
TaqI	TCGA	1 cut(s)	297
TasI	AATT	8 cut(s)	144, 185, 257, 311, 321, 1074, 1130, 1294
TatI	WGTACW	1 cut(s)	1126
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	4 cut(s)	18, 782, 953, 1024
Tru1I	TTAA	4 cut(s)	624, 993, 1077, 1297
Tru9I	TTAA	4 cut(s)	624, 993, 1077, 1297
TseFI	GTSAC	3 cut(s)	374, 880, 1256
TseI	GCWGC	4 cut(s)	48, 238, 347, 807
Tsp45I	GTSAC	3 cut(s)	374, 880, 1256
TspDTI	ATGAA	3 cut(s)	92, 1188, 1209
Tth111I	GACNNNGTC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	144, 311, 321
XceI	RCATGY	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	2 cut(s)	860, 1098
XspI	CTAG	2 cut(s)	696, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.