Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44820 |
| fragaria_vesca | FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 |
| malus_domestica | MD03G1132400.v1.1 MD11G1154700.v1.1 |
| prunus_persica | Prupe.6G117000_v2.0.a1 Prupe.6G117000_v2.0.a1 Prupe.6G117000_v2.0.a1 |
| pyrus_communis | pycom11g12620 |
| rosa_chinensis | RchiOBHm_Chr5g0055801 |
| rosa_laevigata | RLG00000035010 |
| rosa_multiflora | Rmu_sc0003306.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00024540 |
| rosa_rugosa | Rorug05G0294900 |
| rosa_samantha | Rh5AG365800 Rh5BG376500 Rh5CG399500 Rh5DG389400 |
| rosa_wichuraiana | Rw5G034320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1535 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 67 |
| Acc36I | ACCTGC | 1 cut(s) | 1535 |
| AccBSI | CCGCTC | 1 cut(s) | 1538 |
| AccI | GTMKAC | 1 cut(s) | 709 |
| AccII | CGCG | 1 cut(s) | 610 |
| AciI | CCGC | 6 cut(s) | 1120, 1294, 1484, 1536, 1887, 1915 |
| AclWI | GGATC | 3 cut(s) | 1181, 1194, 1585 |
| AcoI | YGGCCR | 1 cut(s) | 536 |
| AcuI | CTGAAG | 1 cut(s) | 452 |
| AcvI | CACGTG | 1 cut(s) | 394 |
| AfaI | GTAC | 7 cut(s) | 323, 514, 556, 743, 758, 1091, 1506 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 770, 1660 |
| AjnI | CCWGG | 4 cut(s) | 220, 568, 1594, 1659 |
| AleI | CACNNNNGTG | 1 cut(s) | 506 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 482, 514, 1101, 1133, 1847, 1879 |
| Alw21I | GWGCWC | 1 cut(s) | 1781 |
| Alw26I | GTCTC | 6 cut(s) | 25, 887, 959, 1076, 1302, 1392 |
| AlwI | GGATC | 3 cut(s) | 1181, 1194, 1585 |
| Ama87I | CYCGRG | 2 cut(s) | 270, 520 |
| AoxI | GGCC | 1 cut(s) | 536 |
| ApeKI | GCWGC | 3 cut(s) | 314, 1304, 1307 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 424, 456 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 465 |
| AspLEI | GCGC | 4 cut(s) | 610, 734, 1457, 1653 |
| AsuC2I | CCSGG | 1 cut(s) | 765 |
| AsuHPI | GGTGA | 3 cut(s) | 274, 843, 1651 |
| AsuNHI | GCTAGC | 2 cut(s) | 148, 1036 |
| AvaI | CYCGRG | 2 cut(s) | 270, 520 |
| BalI | TGGCCA | 1 cut(s) | 538 |
| BamHI | GGATCC | 1 cut(s) | 1186 |
| BanII | GRGCYC | 2 cut(s) | 271, 1781 |
| BauI | CACGAG | 1 cut(s) | 1821 |
| BbrPI | CACGTG | 1 cut(s) | 394 |
| Bbv12I | GWGCWC | 1 cut(s) | 1781 |
| BbvI | GCAGC | 3 cut(s) | 326, 1316, 1319 |
| BccI | CCATC | 7 cut(s) | 117, 528, 862, 980, 1186, 1334, 1625 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 380, 414 |
| BciT130I | CCWGG | 4 cut(s) | 222, 570, 1596, 1661 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcnI | CCSGG | 1 cut(s) | 765 |
| BcoDI | GTCTC | 6 cut(s) | 25, 887, 959, 1076, 1302, 1392 |
| BfaI | CTAG | 7 cut(s) | 149, 438, 1037, 1235, 1709, 1767, 1875 |
| BfmI | CTRYAG | 1 cut(s) | 1443 |
| BfoI | RGCGCY | 1 cut(s) | 735 |
| BfuAI | ACCTGC | 1 cut(s) | 1535 |
| BglII | AGATCT | 1 cut(s) | 929 |
| BisI | GCNGC | 3 cut(s) | 315, 1305, 1308 |
| BlsI | GCNGC | 3 cut(s) | 316, 1306, 1309 |
| BmcAI | AGTACT | 2 cut(s) | 758, 1506 |
| Bme1390I | CCNGG | 5 cut(s) | 222, 570, 765, 1596, 1661 |
| BmeT110I | CYCGRG | 2 cut(s) | 270, 520 |
| BmiI | GGNNCC | 1 cut(s) | 1188 |
| BmrFI | CCNGG | 5 cut(s) | 222, 570, 765, 1596, 1661 |
| BmsI | GCATC | 3 cut(s) | 1387, 1534, 1822 |
| BmtI | GCTAGC | 2 cut(s) | 152, 1040 |
| BoxI | GACNNNNGTC | 1 cut(s) | 203 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1482, 1514, 1768, 1800 |
| BpmI | CTGGAG | 1 cut(s) | 1191 |
| Bpu10I | CCTNAGC | 1 cut(s) | 622 |
| BpuEI | CTTGAG | 1 cut(s) | 911 |
| BpuMI | CCSGG | 1 cut(s) | 765 |
| BsaAI | YACGTR | 2 cut(s) | 394, 713 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1272 |
| BsaI | GGTCTC | 3 cut(s) | 887, 959, 1302 |
| BsaJI | CCNNGG | 3 cut(s) | 220, 1382, 1594 |
| BsaWI | WCCGGW | 2 cut(s) | 442, 1282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 770, 1660 |
| Bse118I | RCCGGY | 1 cut(s) | 728 |
| Bse1I | ACTGG | 1 cut(s) | 1190 |
| Bse3DI | GCAATG | 1 cut(s) | 557 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1272 |
| BseBI | CCWGG | 4 cut(s) | 222, 570, 1596, 1661 |
| BseDI | CCNNGG | 3 cut(s) | 220, 1382, 1594 |
| BseGI | GGATG | 5 cut(s) | 162, 539, 854, 1148, 1378 |
| BseJI | GATNNNNATC | 1 cut(s) | 1272 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 770, 1660 |
| BseMI | GCAATG | 1 cut(s) | 557 |
| BseMII | CTCAG | 6 cut(s) | 15, 309, 636, 1155, 1543, 1872 |
| BseNI | ACTGG | 1 cut(s) | 1190 |
| BseRI | GAGGAG | 3 cut(s) | 858, 1164, 1730 |
| BseXI | GCAGC | 3 cut(s) | 326, 1316, 1319 |
| BsgI | GTGCAG | 3 cut(s) | 249, 333, 477 |
| Bsh1236I | CGCG | 1 cut(s) | 610 |
| BshFI | GGCC | 1 cut(s) | 538 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1781 |
| BsiHKCI | CYCGRG | 2 cut(s) | 270, 520 |
| BsiSI | CCGG | 4 cut(s) | 443, 729, 764, 1283 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 770, 1660 |
| BsmAI | GTCTC | 6 cut(s) | 25, 887, 959, 1076, 1302, 1392 |
| BsmBI | CGTCTC | 1 cut(s) | 1076 |
| BsmI | GAATGC | 1 cut(s) | 1029 |
| BsnI | GGCC | 1 cut(s) | 538 |
| Bso31I | GGTCTC | 3 cut(s) | 887, 959, 1302 |
| BsoBI | CYCGRG | 2 cut(s) | 270, 520 |
| Bsp1286I | GDGCHC | 2 cut(s) | 271, 1781 |
| Bsp1407I | TGTACA | 1 cut(s) | 1089 |
| Bsp143I | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| Bsp19I | CCATGG | 1 cut(s) | 1382 |
| BspACI | CCGC | 6 cut(s) | 1120, 1294, 1484, 1536, 1887, 1915 |
| BspANI | GGCC | 1 cut(s) | 538 |
| BspCNI | CTCAG | 6 cut(s) | 16, 310, 635, 1156, 1542, 1871 |
| BspFNI | CGCG | 1 cut(s) | 610 |
| BspHI | TCATGA | 1 cut(s) | 486 |
| BspLI | GGNNCC | 1 cut(s) | 1188 |
| BspMI | ACCTGC | 1 cut(s) | 1535 |
| BspOI | GCTAGC | 2 cut(s) | 152, 1040 |
| BspPI | GGATC | 3 cut(s) | 1181, 1194, 1585 |
| BspQI | GCTCTTC | 1 cut(s) | 1317 |
| BspTNI | GGTCTC | 3 cut(s) | 887, 959, 1302 |
| BsrBI | CCGCTC | 1 cut(s) | 1538 |
| BsrDI | GCAATG | 1 cut(s) | 557 |
| BsrFI | RCCGGY | 1 cut(s) | 728 |
| BsrGI | TGTACA | 1 cut(s) | 1089 |
| BsrI | ACTGG | 1 cut(s) | 1190 |
| BssAI | RCCGGY | 1 cut(s) | 728 |
| BssECI | CCNNGG | 3 cut(s) | 220, 1382, 1594 |
| BssMI | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| BssNAI | GTATAC | 1 cut(s) | 710 |
| BssSI | CACGAG | 1 cut(s) | 1821 |
| BssT1I | CCWWGG | 1 cut(s) | 1382 |
| Bst1107I | GTATAC | 1 cut(s) | 710 |
| Bst2BI | CACGAG | 1 cut(s) | 1821 |
| Bst2UI | CCWGG | 4 cut(s) | 222, 570, 1596, 1661 |
| Bst6I | CTCTTC | 7 cut(s) | 207, 446, 811, 1317, 1514, 1707, 1742 |
| BstAUI | TGTACA | 1 cut(s) | 1089 |
| BstBAI | YACGTR | 2 cut(s) | 394, 713 |
| BstC8I | GCNNGC | 5 cut(s) | 150, 730, 1038, 1453, 1781 |
| BstDSI | CCRYGG | 1 cut(s) | 1382 |
| BstEII | GGTNACC | 1 cut(s) | 1479 |
| BstF5I | GGATG | 5 cut(s) | 162, 539, 854, 1148, 1378 |
| BstFNI | CGCG | 1 cut(s) | 610 |
| BstH2I | RGCGCY | 1 cut(s) | 735 |
| BstHHI | GCGC | 4 cut(s) | 610, 734, 1457, 1653 |
| BstKTI | GATC | 5 cut(s) | 877, 932, 1189, 1593, 1880 |
| BstMAI | GTCTC | 6 cut(s) | 25, 887, 959, 1076, 1302, 1392 |
| BstMBI | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1033, 1042, 1259, 1384, 1776, 1832 |
| BstNI | CCWGG | 4 cut(s) | 222, 570, 1596, 1661 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 203 |
| BstPI | GGTNACC | 1 cut(s) | 1479 |
| BstSCI | CCNGG | 5 cut(s) | 220, 568, 763, 1594, 1659 |
| BstSFI | CTRYAG | 1 cut(s) | 1443 |
| BstUI | CGCG | 1 cut(s) | 610 |
| BstV1I | GCAGC | 3 cut(s) | 326, 1316, 1319 |
| BstX2I | RGATCY | 2 cut(s) | 929, 1186 |
| BstYI | RGATCY | 2 cut(s) | 929, 1186 |
| BstZ17I | GTATAC | 1 cut(s) | 710 |
| BsuRI | GGCC | 1 cut(s) | 538 |
| BtgI | CCRYGG | 1 cut(s) | 1382 |
| BtsCI | GGATG | 5 cut(s) | 162, 539, 854, 1148, 1378 |
| BtsI | GCAGTG | 1 cut(s) | 1590 |
| BtsIMutI | CAGTG | 6 cut(s) | 81, 177, 307, 1197, 1590, 1866 |
| BveI | ACCTGC | 1 cut(s) | 1535 |
| Cac8I | GCNNGC | 5 cut(s) | 150, 730, 1038, 1453, 1781 |
| CciI | TCATGA | 1 cut(s) | 486 |
| CfoI | GCGC | 4 cut(s) | 610, 734, 1457, 1653 |
| Cfr10I | RCCGGY | 1 cut(s) | 728 |
| CseI | GACGC | 1 cut(s) | 1457 |
| CsiI | ACCWGGT | 1 cut(s) | 1659 |
| Csp6I | GTAC | 7 cut(s) | 322, 513, 555, 742, 757, 1090, 1505 |
| CviAII | CATG | 6 cut(s) | 487, 1249, 1383, 1423, 1460, 1580 |
| CviQI | GTAC | 7 cut(s) | 322, 513, 555, 742, 757, 1090, 1505 |
| DpnI | GATC | 5 cut(s) | 876, 931, 1188, 1592, 1879 |
| DpnII | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| DraI | TTTAAA | 1 cut(s) | 676 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 67 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 67 |
| EaeI | YGGCCR | 1 cut(s) | 536 |
| Eam1104I | CTCTTC | 7 cut(s) | 207, 446, 811, 1317, 1514, 1707, 1742 |
| EarI | CTCTTC | 7 cut(s) | 207, 446, 811, 1317, 1514, 1707, 1742 |
| EciI | GGCGGA | 1 cut(s) | 1109 |
| Ecl136II | GAGCTC | 1 cut(s) | 1779 |
| Eco130I | CCWWGG | 1 cut(s) | 1382 |
| Eco24I | GRGCYC | 2 cut(s) | 271, 1781 |
| Eco31I | GGTCTC | 3 cut(s) | 887, 959, 1302 |
| Eco32I | GATATC | 3 cut(s) | 79, 280, 649 |
| Eco53kI | GAGCTC | 1 cut(s) | 1779 |
| Eco57I | CTGAAG | 1 cut(s) | 452 |
| Eco72I | CACGTG | 1 cut(s) | 394 |
| Eco88I | CYCGRG | 2 cut(s) | 270, 520 |
| Eco91I | GGTNACC | 1 cut(s) | 1479 |
| EcoICRI | GAGCTC | 1 cut(s) | 1779 |
| EcoO65I | GGTNACC | 1 cut(s) | 1479 |
| EcoRII | CCWGG | 4 cut(s) | 220, 568, 1594, 1659 |
| EcoRV | GATATC | 3 cut(s) | 79, 280, 649 |
| EcoT14I | CCWWGG | 1 cut(s) | 1382 |
| EcoT22I | ATGCAT | 1 cut(s) | 1527 |
| EcoT38I | GRGCYC | 2 cut(s) | 271, 1781 |
| ErhI | CCWWGG | 1 cut(s) | 1382 |
| Esp3I | CGTCTC | 1 cut(s) | 1076 |
| FaeI | CATG | 6 cut(s) | 490, 1252, 1386, 1426, 1463, 1583 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1927 |
| FatI | CATG | 6 cut(s) | 486, 1248, 1382, 1422, 1459, 1579 |
| FauI | CCCGC | 1 cut(s) | 1922 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FblI | GTMKAC | 1 cut(s) | 709 |
| Fnu4HI | GCNGC | 3 cut(s) | 315, 1305, 1308 |
| FokI | GGATG | 5 cut(s) | 169, 546, 841, 1135, 1365 |
| FriOI | GRGCYC | 2 cut(s) | 271, 1781 |
| Fsp4HI | GCNGC | 3 cut(s) | 315, 1305, 1308 |
| FspBI | CTAG | 7 cut(s) | 149, 438, 1037, 1235, 1709, 1767, 1875 |
| GlaI | GCGC | 4 cut(s) | 609, 733, 1456, 1652 |
| GluI | GCNGC | 3 cut(s) | 315, 1305, 1308 |
| GsuI | CTGGAG | 1 cut(s) | 1191 |
| HaeII | RGCGCY | 1 cut(s) | 735 |
| HaeIII | GGCC | 1 cut(s) | 538 |
| HapII | CCGG | 4 cut(s) | 443, 729, 764, 1283 |
| HgaI | GACGC | 1 cut(s) | 1457 |
| HhaI | GCGC | 4 cut(s) | 610, 734, 1457, 1653 |
| Hin1II | CATG | 6 cut(s) | 490, 1252, 1386, 1426, 1463, 1583 |
| Hin6I | GCGC | 4 cut(s) | 608, 732, 1455, 1651 |
| HinP1I | GCGC | 4 cut(s) | 608, 732, 1455, 1651 |
| HindIII | AAGCTT | 3 cut(s) | 464, 843, 1936 |
| HinfI | GANTC | 9 cut(s) | 167, 255, 565, 681, 1076, 1231, 1273, 1319, 1437 |
| HpaII | CCGG | 4 cut(s) | 443, 729, 764, 1283 |
| HphI | GGTGA | 3 cut(s) | 274, 843, 1651 |
| Hpy166II | GTNNAC | 3 cut(s) | 501, 513, 710 |
| Hpy188III | TCNNGA | 8 cut(s) | 196, 241, 487, 688, 872, 1316, 1326, 1852 |
| Hpy8I | GTNNAC | 3 cut(s) | 501, 513, 710 |
| HpyAV | CCTTC | 3 cut(s) | 32, 968, 1212 |
| HpyCH4IV | ACGT | 3 cut(s) | 393, 712, 1085 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1033, 1042, 1259, 1384, 1776, 1832 |
| HpySE526I | ACGT | 3 cut(s) | 393, 712, 1085 |
| Hsp92II | CATG | 6 cut(s) | 490, 1252, 1386, 1426, 1463, 1583 |
| HspAI | GCGC | 4 cut(s) | 608, 732, 1455, 1651 |
| KroI | GCCGGC | 1 cut(s) | 728 |
| KroNI | GCCGGC | 1 cut(s) | 730 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| Kzo9I | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| LguI | GCTCTTC | 1 cut(s) | 1317 |
| LmnI | GCTCC | 2 cut(s) | 1033, 1375 |
| Lsp1109I | GCAGC | 3 cut(s) | 326, 1316, 1319 |
| LweI | GCATC | 3 cut(s) | 1387, 1534, 1822 |
| MabI | ACCWGGT | 1 cut(s) | 1659 |
| MaeI | CTAG | 7 cut(s) | 149, 438, 1037, 1235, 1709, 1767, 1875 |
| MaeII | ACGT | 3 cut(s) | 393, 712, 1085 |
| MaeIII | GTNAC | 9 cut(s) | 3, 260, 426, 794, 1158, 1192, 1479, 1585, 1639 |
| MalI | GATC | 5 cut(s) | 876, 931, 1188, 1592, 1879 |
| MbiI | CCGCTC | 1 cut(s) | 1538 |
| MboI | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| MfeI | CAATTG | 1 cut(s) | 403 |
| MflI | RGATCY | 2 cut(s) | 929, 1186 |
| MhlI | GDGCHC | 2 cut(s) | 271, 1781 |
| MlsI | TGGCCA | 1 cut(s) | 538 |
| MluCI | AATT | 3 cut(s) | 235, 403, 832 |
| MluNI | TGGCCA | 1 cut(s) | 538 |
| MlyI | GAGTC | 3 cut(s) | 574, 675, 1431 |
| MmeI | TCCRAC | 3 cut(s) | 987, 1011, 1681 |
| Mox20I | TGGCCA | 1 cut(s) | 538 |
| Mph1103I | ATGCAT | 1 cut(s) | 1527 |
| MroNI | GCCGGC | 1 cut(s) | 728 |
| MroXI | GAANNNNTTC | 1 cut(s) | 465 |
| MscI | TGGCCA | 1 cut(s) | 538 |
| MseI | TTAA | 5 cut(s) | 675, 831, 902, 1217, 1731 |
| MslI | CAYNNNNRTG | 1 cut(s) | 506 |
| Msp20I | TGGCCA | 1 cut(s) | 538 |
| MspA1I | CMGCKG | 2 cut(s) | 317, 1889 |
| MspI | CCGG | 4 cut(s) | 443, 729, 764, 1283 |
| MspR9I | CCNGG | 5 cut(s) | 222, 570, 765, 1596, 1661 |
| MunI | CAATTG | 1 cut(s) | 403 |
| Mva1269I | GAATGC | 1 cut(s) | 1029 |
| MvaI | CCWGG | 4 cut(s) | 222, 570, 1596, 1661 |
| MvnI | CGCG | 1 cut(s) | 610 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1033, 1042, 1259, 1384, 1776, 1832 |
| NaeI | GCCGGC | 1 cut(s) | 730 |
| NciI | CCSGG | 1 cut(s) | 765 |
| NcoI | CCATGG | 1 cut(s) | 1382 |
| NdeII | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| NgoMIV | GCCGGC | 1 cut(s) | 728 |
| NheI | GCTAGC | 2 cut(s) | 148, 1036 |
| NlaIII | CATG | 6 cut(s) | 490, 1252, 1386, 1426, 1463, 1583 |
| NlaIV | GGNNCC | 1 cut(s) | 1188 |
| NmeAIII | GCCGAG | 1 cut(s) | 1779 |
| NmuCI | GTSAC | 5 cut(s) | 3, 794, 1192, 1585, 1639 |
| NsiI | ATGCAT | 1 cut(s) | 1527 |
| OliI | CACNNNNGTG | 1 cut(s) | 506 |
| PaeR7I | CTCGAG | 1 cut(s) | 270 |
| PagI | TCATGA | 1 cut(s) | 486 |
| PaqCI | CACCTGC | 1 cut(s) | 1535 |
| PciSI | GCTCTTC | 1 cut(s) | 1317 |
| PctI | GAATGC | 1 cut(s) | 1029 |
| PdiI | GCCGGC | 1 cut(s) | 730 |
| PdmI | GAANNNNTTC | 1 cut(s) | 465 |
| PfeI | GAWTC | 6 cut(s) | 167, 255, 1076, 1231, 1273, 1319 |
| PkrI | GCNGC | 3 cut(s) | 316, 1306, 1309 |
| PleI | GAGTC | 3 cut(s) | 573, 675, 1431 |
| PmaCI | CACGTG | 1 cut(s) | 394 |
| PmlI | CACGTG | 1 cut(s) | 394 |
| PpsI | GAGTC | 3 cut(s) | 573, 675, 1431 |
| Ppu21I | YACGTR | 2 cut(s) | 394, 713 |
| PshAI | GACNNNNGTC | 1 cut(s) | 203 |
| Psp124BI | GAGCTC | 1 cut(s) | 1781 |
| Psp6I | CCWGG | 4 cut(s) | 220, 568, 1594, 1659 |
| PspCI | CACGTG | 1 cut(s) | 394 |
| PspEI | GGTNACC | 1 cut(s) | 1479 |
| PspGI | CCWGG | 4 cut(s) | 220, 568, 1594, 1659 |
| PspN4I | GGNNCC | 1 cut(s) | 1188 |
| PspXI | VCTCGAGB | 1 cut(s) | 270 |
| PsuI | RGATCY | 2 cut(s) | 929, 1186 |
| PvuII | CAGCTG | 1 cut(s) | 317 |
| RsaI | GTAC | 7 cut(s) | 323, 514, 556, 743, 758, 1091, 1506 |
| RsaNI | GTAC | 7 cut(s) | 322, 513, 555, 742, 757, 1090, 1505 |
| RseI | CAYNNNNRTG | 1 cut(s) | 506 |
| SacI | GAGCTC | 1 cut(s) | 1781 |
| SapI | GCTCTTC | 1 cut(s) | 1317 |
| SaqAI | TTAA | 5 cut(s) | 675, 831, 902, 1217, 1731 |
| SatI | GCNGC | 3 cut(s) | 315, 1305, 1308 |
| Sau3AI | GATC | 5 cut(s) | 874, 929, 1186, 1590, 1877 |
| ScaI | AGTACT | 2 cut(s) | 758, 1506 |
| SchI | GAGTC | 3 cut(s) | 574, 675, 1431 |
| ScrFI | CCNGG | 5 cut(s) | 222, 570, 765, 1596, 1661 |
| SduI | GDGCHC | 2 cut(s) | 271, 1781 |
| SexAI | ACCWGGT | 1 cut(s) | 1659 |
| SfaNI | GCATC | 3 cut(s) | 1387, 1534, 1822 |
| SfcI | CTRYAG | 1 cut(s) | 1443 |
| Sfr274I | CTCGAG | 1 cut(s) | 270 |
| SlaI | CTCGAG | 1 cut(s) | 270 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 506 |
| SmlI | CTYRAG | 2 cut(s) | 270, 890 |
| SmoI | CTYRAG | 2 cut(s) | 270, 890 |
| Sse9I | AATT | 3 cut(s) | 235, 403, 832 |
| SsiI | CCGC | 6 cut(s) | 1120, 1294, 1484, 1536, 1887, 1915 |
| SspMI | CTAG | 7 cut(s) | 149, 438, 1037, 1235, 1709, 1767, 1875 |
| SstI | GAGCTC | 1 cut(s) | 1781 |
| StyD4I | CCNGG | 5 cut(s) | 220, 568, 763, 1594, 1659 |
| StyI | CCWWGG | 1 cut(s) | 1382 |
| TaiI | ACGT | 3 cut(s) | 396, 715, 1088 |
| TaqI | TCGA | 3 cut(s) | 271, 287, 1047 |
| TasI | AATT | 3 cut(s) | 235, 403, 832 |
| TatI | WGTACW | 5 cut(s) | 512, 741, 756, 1089, 1504 |
| TfiI | GAWTC | 6 cut(s) | 167, 255, 1076, 1231, 1273, 1319 |
| Tru1I | TTAA | 5 cut(s) | 675, 831, 902, 1217, 1731 |
| Tru9I | TTAA | 5 cut(s) | 675, 831, 902, 1217, 1731 |
| TscAI | CASTG | 6 cut(s) | 88, 184, 314, 1197, 1590, 1866 |
| TseFI | GTSAC | 5 cut(s) | 3, 794, 1192, 1585, 1639 |
| TseI | GCWGC | 3 cut(s) | 314, 1304, 1307 |
| Tsp45I | GTSAC | 5 cut(s) | 3, 794, 1192, 1585, 1639 |
| TspDTI | ATGAA | 7 cut(s) | 104, 177, 354, 503, 657, 961, 1757 |
| TspRI | CASTG | 6 cut(s) | 88, 184, 314, 1197, 1590, 1866 |
| XhoI | CTCGAG | 1 cut(s) | 270 |
| XmiI | GTMKAC | 1 cut(s) | 709 |
| XmnI | GAANNNNTTC | 1 cut(s) | 465 |
| XspI | CTAG | 7 cut(s) | 149, 438, 1037, 1235, 1709, 1767, 1875 |
| ZrmI | AGTACT | 2 cut(s) | 758, 1506 |
| Zsp2I | ATGCAT | 1 cut(s) | 1527 |