Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003306.1

Orthogroup ID

OG0008659

Physical Location & Seq

Genomic Coordinates Reverse (-)

10031 .. 15983

Gene Structure 5953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003306.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

atgcctcctgctaggaaggtttctgagtttttcagagaaggcaatgactggttttgcaaagccggattgccgagtgatattactgttgtggtggacggtgtaaggttccatcttcataagtttcctctcatatcaaaatgtgggaagatagcacgtttatatgaagagtccgaaaggaaacatgagaagattttcactacagttcttgaggaattccctggtggccctgacatgttcctgatcgcagctaaattctgctatggtacgcgggtggaattgacttcaagaaacatagtaatggtgtactgtgcagcggactaccttgaaatgatagatgagtttggagaagaaaacttactctcaaagtcggagagttttttctataagaatatacttcacaactggaaagactgtatcttggctcttcaaagttctgagcctgttctccaaagggcagaaaaacttcacataataaacaaatgtgtaaatgctttatcggtgatggtttgtactgatcctagtttatttgggtggcccatgatgatgtatggtagcttacagagtcctggtggaagcatcctatggaatggaattaatactggagcaaggattagaagctctgagtctgattggtggtttgaagacatctcatacctcagtgtgagtttgtttgagagactcatcaaggcaatggaaacaaagggtataagacccgaaaacattgtaggtgctgtaatgcactataccagaaaatacctacctggcctgggcagatcgcagggtggacaacatagtatacccaggacagttacaagttttagttttacacccattgcccttgatcaaagggtagttttagaaagcattgagaaacttcttccccaaaagaagggtaaatcattttgccggtttttgctcggacttcttcgtgttgcattaatattgggagccagtcaaacctgcaaggactctttagagaagagaataggcaggcaactggaatttgcaactttagatggtcttctgattcctacttattcagatgctgagacattgtatgatattgagactgttcaacggataatccaacatttcatgtcatcagaatcgaaggttacaccattttctccagcatcagttgaaccggaaacatctccatcatcgggaccattaaggttagtggcaaagctgatagatagctacattgcggaggttgcttcagatgttgctttaaagcctggaaagatacgctctcttgcagaggctcttccagattcttcaagaactttgcatgatgggctgtatcggtcacttgatatatacttcaaggcgcatccttggctcacagataaggagaaggaagaactttgcaacatcattgacttccagaaactctctattgatgcatgtgcccatgcatcccaaaatgaaaggttaccgcttagagttgttcttcaagtcctgttctttgagcagatgcatttgagaactgctctagctggtcatctgaatgtcttggaaacagaaagtgcccctacaggtcctgttaatgtccaagctgagatggctggccagattatacagagggatgggtgggtgactatggtgcgtgagaaccgggttttaaaggtggatatggacaagatgagatctagagttggtgagcttgaacaagaatttagtaaaataaagcaagagatgaaaaaggtgtccaaatcacatagttccctcagttcgcctcgtgtggttgccaggagaattgggtgcaatcttctttcacgaccttcagatgataaaccagtgaccattggaagtaccgggccctccccaagagcatcagttgagcaggcacaggttctggttggtcctcagaaaatatctgaaaaaggaagggaaattctaaaattgacatcatcatcgagatcttttgaatgttttgagcttccttcacgtttctgtgaaccaaccagaattgtacggcagtgtctggatggaggacgctggagccgagtcaccgttaccactggacctccatctccgactggaaagcgacctagagacgaactggaagacgacgacaatcatgaagacgaagagagctgcggccgagattcggtgctcgagactcgatatgtacctacagcttcttcttcctcatcgcggatttcgttctcatttcccgctcccaaaatcctaacgctgacgacactcttgagcttaagaaaagccgttgcgtctgcttcttcagtgtcgcgaggagcagatgctggagtggaggccaaagattgcatcaagatcaaggatatggcattgaaggcttcggtagcctacaaaaactgcaagcggtgttcgaggctgtgcggcgaacatcggaatcggaactgttcggattttgatatgtcgtcgaagttccactgctcgtaccagaggactgggagctcgaattcgacgctgaggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

820

Amino Acids

91.76

Weight (kDa)

8.61

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44820
fragaria_vesca	FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070 FvH4_3g30070
malus_domestica	MD03G1132400.v1.1 MD11G1154700.v1.1
prunus_persica	Prupe.6G117000_v2.0.a1 Prupe.6G117000_v2.0.a1 Prupe.6G117000_v2.0.a1
pyrus_communis	pycom11g12620
rosa_chinensis	RchiOBHm_Chr5g0055801
rosa_laevigata	RLG00000035010
rosa_multiflora	Rmu_sc0003306.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024540
rosa_rugosa	Rorug05G0294900
rosa_samantha	Rh5AG365800 Rh5BG376500 Rh5CG399500 Rh5DG389400
rosa_wichuraiana	Rw5G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	968
AccBSI	CCGCTC	1 cut(s)	2183
AccI	GTMKAC	1 cut(s)	796
AccII	CGCG	3 cut(s)	268, 2161, 2254
AciI	CCGC	9 cut(s)	268, 314, 1208, 1439, 2103, 2161, 2181, 2344, 2361
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	2 cut(s)	1570, 2104
AcsI	RAATTY	6 cut(s)	212, 251, 1001, 1676, 1896, 2443
AcuI	CTGAAG	3 cut(s)	1203, 1770, 2229
AfaI	GTAC	7 cut(s)	265, 305, 511, 1816, 1977, 2136, 2423
AfiI	CCNNNNNNNGG	5 cut(s)	767, 889, 1163, 2113, 2160
AflII	CTTAAG	1 cut(s)	2218
AflIII	ACRYGT	1 cut(s)	231
AjnI	CCWGG	7 cut(s)	217, 565, 760, 765, 800, 1237, 1751
Alw21I	GWGCWC	2 cut(s)	2121, 2441
Alw26I	GTCTC	5 cut(s)	670, 1043, 1061, 2052, 2117
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	5 cut(s)	1046, 1544, 1858, 1987, 2267
Ama87I	CYCGRG	1 cut(s)	2120
AoxI	GGCC	7 cut(s)	223, 533, 763, 1570, 1820, 2104, 2277
ApaI	GGGCCC	1 cut(s)	1824
ApeKI	GCWGC	3 cut(s)	245, 311, 2100
ApoI	RAATTY	6 cut(s)	212, 251, 1001, 1676, 1896, 2443
AseI	ATTAAT	2 cut(s)	594, 938
Asp700I	GAANNNNTTC	2 cut(s)	191, 462
AspLEI	GCGC	1 cut(s)	1333
AspS9I	GGNCC	8 cut(s)	224, 534, 1166, 1541, 1820, 1821, 1865, 2027
AsuC2I	CCSGG	2 cut(s)	1619, 1819
AsuHPI	GGTGA	4 cut(s)	511, 1609, 1673, 2005
AvaI	CYCGRG	1 cut(s)	2120
AvaII	GGWCC	4 cut(s)	1166, 1541, 1865, 2027
BaeGI	GKGCMC	3 cut(s)	1414, 1534, 1824
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BalI	TGGCCA	1 cut(s)	1572
BanII	GRGCYC	2 cut(s)	1824, 2441
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BauI	CACGAG	1 cut(s)	1740
BbsI	GAAGAC	4 cut(s)	648, 1013, 2076, 2094
Bbv12I	GWGCWC	2 cut(s)	2121, 2441
BbvCI	CCTCAGC	1 cut(s)	2453
BbvI	GCAGC	3 cut(s)	257, 323, 2087
BccI	CCATC	9 cut(s)	117, 496, 1010, 1165, 1289, 1558, 1583, 1985, 2041
BceAI	ACGGC	2 cut(s)	1994, 2213
BciT130I	CCWGG	7 cut(s)	219, 567, 762, 767, 802, 1239, 1753
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	2 cut(s)	1619, 1819
BcoDI	GTCTC	5 cut(s)	670, 1043, 1061, 2052, 2117
BfaI	CTAG	5 cut(s)	12, 519, 1496, 1653, 2055
BfmI	CTRYAG	3 cut(s)	198, 1536, 2139
BfrI	CTTAAG	1 cut(s)	2218
BfuAI	ACCTGC	1 cut(s)	968
BglII	AGATCT	2 cut(s)	1649, 1922
BisI	GCNGC	5 cut(s)	246, 312, 2101, 2104, 2362
BlsI	GCNGC	5 cut(s)	247, 313, 2102, 2105, 2363
Bme1390I	CCNGG	9 cut(s)	219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
Bme18I	GGWCC	4 cut(s)	1166, 1541, 1865, 2027
BmeT110I	CYCGRG	1 cut(s)	2120
BmgT120I	GGNCC	8 cut(s)	224, 534, 1166, 1541, 1820, 1821, 1865, 2027
BmiI	GGNNCC	5 cut(s)	107, 949, 1167, 1822, 2006
BmrFI	CCNGG	9 cut(s)	219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
BmrI	ACTGGG	1 cut(s)	2442
BmuI	ACTGGG	1 cut(s)	2442
BpiI	GAAGAC	4 cut(s)	648, 1013, 2076, 2094
BplI	GAGNNNNNCTC	2 cut(s)	1477, 1509
BpmI	CTGGAG	4 cut(s)	621, 1113, 2023, 2289
Bpu10I	CCTNAGC	1 cut(s)	2453
BpuEI	CTTGAG	2 cut(s)	227, 2233
BpuMI	CCSGG	2 cut(s)	1619, 1819
BsaJI	CCNNGG	4 cut(s)	217, 766, 800, 1337
BsaWI	WCCGGW	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	2 cut(s)	2014, 2044
Bsc4I	CCNNNNNNNGG	5 cut(s)	767, 889, 1163, 2113, 2160
Bse118I	RCCGGY	1 cut(s)	906
Bse3DI	GCAATG	4 cut(s)	49, 696, 831, 1203
BseBI	CCWGG	7 cut(s)	219, 567, 762, 767, 802, 1239, 1753
BseDI	CCNNGG	4 cut(s)	217, 766, 800, 1337
BseGI	GGATG	5 cut(s)	576, 1333, 1418, 1594, 1996
BseLI	CCNNNNNNNGG	5 cut(s)	767, 889, 1163, 2113, 2160
BseMI	GCAATG	4 cut(s)	49, 696, 831, 1203
BseMII	CTCAG	9 cut(s)	15, 426, 612, 670, 1038, 1551, 1744, 1883, 2444
BseRI	GAGGAG	1 cut(s)	2271
BseSI	GKGCMC	3 cut(s)	1414, 1534, 1824
BseX3I	CGGCCG	1 cut(s)	2104
BseXI	GCAGC	3 cut(s)	257, 323, 2087
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	3 cut(s)	268, 2161, 2254
Bsh1285I	CGRYCG	1 cut(s)	2107
BshFI	GGCC	7 cut(s)	225, 535, 765, 1572, 1822, 2106, 2279
BsiEI	CGRYCG	1 cut(s)	2107
BsiHKAI	GWGCWC	2 cut(s)	2121, 2441
BsiHKCI	CYCGRG	1 cut(s)	2120
BsiSI	CCGG	5 cut(s)	63, 907, 1145, 1618, 1818
BslFI	GGGAC	1 cut(s)	1179
BslI	CCNNNNNNNGG	5 cut(s)	767, 889, 1163, 2113, 2160
BsmAI	GTCTC	5 cut(s)	670, 1043, 1061, 2052, 2117
BsmBI	CGTCTC	1 cut(s)	2052
BsmFI	GGGAC	1 cut(s)	1179
BsnI	GGCC	7 cut(s)	225, 535, 765, 1572, 1822, 2106, 2279
BsoBI	CYCGRG	1 cut(s)	2120
Bsp120I	GGGCCC	1 cut(s)	1820
Bsp1286I	GDGCHC	5 cut(s)	1414, 1534, 1824, 2121, 2441
Bsp143I	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
Bsp68I	TCGCGA	1 cut(s)	2254
BspACI	CCGC	9 cut(s)	268, 314, 1208, 1439, 2103, 2161, 2181, 2344, 2361
BspANI	GGCC	7 cut(s)	225, 535, 765, 1572, 1822, 2106, 2279
BspCNI	CTCAG	9 cut(s)	16, 427, 613, 669, 1039, 1552, 1743, 1882, 2445
BspFNI	CGCG	3 cut(s)	268, 2161, 2254
BspHI	TCATGA	1 cut(s)	2083
BspLI	GGNNCC	5 cut(s)	107, 949, 1167, 1822, 2006
BspMI	ACCTGC	1 cut(s)	968
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	2 cut(s)	429, 1272
BspTI	CTTAAG	1 cut(s)	2218
BsrBI	CCGCTC	1 cut(s)	2183
BsrDI	GCAATG	4 cut(s)	49, 696, 831, 1203
BsrFI	RCCGGY	1 cut(s)	906
BssAI	RCCGGY	1 cut(s)	906
BssECI	CCNNGG	4 cut(s)	217, 766, 800, 1337
BssMI	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
BssNAI	GTATAC	1 cut(s)	797
BssSI	CACGAG	1 cut(s)	1740
BssT1I	CCWWGG	1 cut(s)	1337
Bst1107I	GTATAC	1 cut(s)	797
Bst2BI	CACGAG	1 cut(s)	1740
Bst2UI	CCWGG	7 cut(s)	219, 567, 762, 767, 802, 1239, 1753
Bst4CI	ACNGT	9 cut(s)	85, 98, 202, 308, 413, 808, 1072, 2017, 2384
Bst6I	CTCTTC	5 cut(s)	159, 429, 974, 1272, 2088
BstAFI	CTTAAG	1 cut(s)	2218
BstC8I	GCNNGC	4 cut(s)	992, 1570, 1848, 2342
BstEII	GGTNACC	1 cut(s)	1434
BstF5I	GGATG	5 cut(s)	576, 1333, 1418, 1594, 1996
BstFNI	CGCG	3 cut(s)	268, 2161, 2254
BstHHI	GCGC	1 cut(s)	1333
BstKTI	GATC	7 cut(s)	243, 517, 776, 844, 1652, 1925, 2298
BstMAI	GTCTC	5 cut(s)	670, 1043, 1061, 2052, 2117
BstMBI	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
BstMCI	CGRYCG	1 cut(s)	2107
BstMWI	GCNNNNNNNGC	6 cut(s)	1214, 1297, 1339, 1565, 2315, 2324
BstNI	CCWGG	7 cut(s)	219, 567, 762, 767, 802, 1239, 1753
BstNSI	RCATGY	2 cut(s)	235, 1410
BstPI	GGTNACC	1 cut(s)	1434
BstSCI	CCNGG	9 cut(s)	217, 565, 760, 765, 800, 1237, 1617, 1751, 1817
BstSFI	CTRYAG	3 cut(s)	198, 1536, 2139
BstSLI	GKGCMC	3 cut(s)	1414, 1534, 1824
BstUI	CGCG	3 cut(s)	268, 2161, 2254
BstV1I	GCAGC	3 cut(s)	257, 323, 2087
BstV2I	GAAGAC	4 cut(s)	648, 1013, 2076, 2094
BstX2I	RGATCY	2 cut(s)	1649, 1922
BstXI	CCANNNNNNTGG	1 cut(s)	2432
BstYI	RGATCY	2 cut(s)	1649, 1922
BstZ17I	GTATAC	1 cut(s)	797
BstZI	CGGCCG	1 cut(s)	2104
BsuRI	GGCC	7 cut(s)	225, 535, 765, 1572, 1822, 2106, 2279
BtgZI	GCGATG	1 cut(s)	2142
BtsCI	GGATG	5 cut(s)	576, 1333, 1418, 1594, 1996
BtsI	GCAGTG	2 cut(s)	1988, 2413
BtsIMutI	CAGTG	6 cut(s)	664, 1806, 1988, 2022, 2253, 2413
BtuMI	TCGCGA	1 cut(s)	2254
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	4 cut(s)	992, 1570, 1848, 2342
CaiI	CAGNNNCTG	5 cut(s)	1046, 1544, 1858, 1987, 2267
CciI	TCATGA	1 cut(s)	2083
CfoI	GCGC	1 cut(s)	1333
Cfr10I	RCCGGY	1 cut(s)	906
Cfr13I	GGNCC	8 cut(s)	224, 534, 1166, 1541, 1820, 1821, 1865, 2027
CseI	GACGC	3 cut(s)	2007, 2223, 2458
Csp6I	GTAC	7 cut(s)	264, 304, 510, 1815, 1976, 2135, 2422
CviAII	CATG	8 cut(s)	182, 232, 538, 1096, 1292, 1407, 1415, 2084
CviQI	GTAC	7 cut(s)	264, 304, 510, 1815, 1976, 2135, 2422
DpnI	GATC	7 cut(s)	242, 516, 775, 843, 1651, 1924, 2297
DpnII	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
DraI	TTTAAA	2 cut(s)	1233, 1626
EaeI	YGGCCR	2 cut(s)	1570, 2104
EagI	CGGCCG	1 cut(s)	2104
Eam1104I	CTCTTC	5 cut(s)	159, 429, 974, 1272, 2088
EarI	CTCTTC	5 cut(s)	159, 429, 974, 1272, 2088
Ecl136II	GAGCTC	1 cut(s)	2439
EclXI	CGGCCG	1 cut(s)	2104
Eco130I	CCWWGG	1 cut(s)	1337
Eco24I	GRGCYC	2 cut(s)	1824, 2441
Eco47I	GGWCC	4 cut(s)	1166, 1541, 1865, 2027
Eco52I	CGGCCG	1 cut(s)	2104
Eco53kI	GAGCTC	1 cut(s)	2439
Eco57I	CTGAAG	3 cut(s)	1203, 1770, 2229
Eco88I	CYCGRG	1 cut(s)	2120
Eco91I	GGTNACC	1 cut(s)	1434
EcoICRI	GAGCTC	1 cut(s)	2439
EcoO109I	RGGNCCY	2 cut(s)	1541, 1821
EcoO65I	GGTNACC	1 cut(s)	1434
EcoRI	GAATTC	2 cut(s)	212, 2443
EcoRII	CCWGG	7 cut(s)	217, 565, 760, 765, 800, 1237, 1751
EcoT14I	CCWWGG	1 cut(s)	1337
EcoT22I	ATGCAT	3 cut(s)	1408, 1420, 1482
EcoT38I	GRGCYC	2 cut(s)	1824, 2441
ErhI	CCWWGG	1 cut(s)	1337
Esp3I	CGTCTC	1 cut(s)	2052
FaeI	CATG	8 cut(s)	185, 235, 541, 1099, 1295, 1410, 1418, 2087
FaqI	GGGAC	1 cut(s)	1179
FatI	CATG	8 cut(s)	181, 231, 537, 1095, 1291, 1406, 1414, 2083
FauI	CCCGC	2 cut(s)	261, 2188
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	796
Fnu4HI	GCNGC	5 cut(s)	246, 312, 2101, 2104, 2362
FokI	GGATG	5 cut(s)	563, 1320, 1405, 1601, 2003
FriOI	GRGCYC	2 cut(s)	1824, 2441
Fsp4HI	GCNGC	5 cut(s)	246, 312, 2101, 2104, 2362
FspBI	CTAG	5 cut(s)	12, 519, 1496, 1653, 2055
GlaI	GCGC	1 cut(s)	1332
GluI	GCNGC	5 cut(s)	246, 312, 2101, 2104, 2362
GsuI	CTGGAG	4 cut(s)	621, 1113, 2023, 2289
HaeIII	GGCC	7 cut(s)	225, 535, 765, 1572, 1822, 2106, 2279
HapII	CCGG	5 cut(s)	63, 907, 1145, 1618, 1818
HgaI	GACGC	3 cut(s)	2007, 2223, 2458
HhaI	GCGC	1 cut(s)	1333
Hin1II	CATG	8 cut(s)	185, 235, 541, 1099, 1295, 1410, 1418, 2087
Hin6I	GCGC	1 cut(s)	1331
HinP1I	GCGC	1 cut(s)	1331
HpaII	CCGG	5 cut(s)	63, 907, 1145, 1618, 1818
HphI	GGTGA	4 cut(s)	511, 1609, 1673, 2005
Hpy166II	GTNNAC	5 cut(s)	94, 304, 785, 797, 1961
Hpy8I	GTNNAC	5 cut(s)	94, 304, 785, 797, 1961
Hpy99I	CGWCG	3 cut(s)	2078, 2407, 2452
HpyAV	CCTTC	9 cut(s)	10, 32, 883, 1105, 1351, 1794, 1884, 1956, 2308
HpyCH4III	ACNGT	9 cut(s)	85, 98, 202, 308, 413, 808, 1072, 2017, 2384
HpyCH4IV	ACGT	2 cut(s)	154, 1951
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1214, 1297, 1339, 1565, 2315, 2324
HpySE526I	ACGT	2 cut(s)	154, 1951
Hsp92II	CATG	8 cut(s)	185, 235, 541, 1099, 1295, 1410, 1418, 2087
HspAI	GCGC	1 cut(s)	1331
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
LguI	GCTCTTC	2 cut(s)	429, 1272
LmnI	GCTCC	6 cut(s)	602, 947, 2004, 2188, 2258, 2436
Lsp1109I	GCAGC	3 cut(s)	257, 323, 2087
MaeI	CTAG	5 cut(s)	12, 519, 1496, 1653, 2055
MaeII	ACGT	2 cut(s)	154, 1951
MaeIII	GTNAC	8 cut(s)	808, 1114, 1308, 1434, 1597, 1801, 2011, 2017
MalI	GATC	7 cut(s)	242, 516, 775, 843, 1651, 1924, 2297
MbiI	CCGCTC	1 cut(s)	2183
MboI	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
MflI	RGATCY	2 cut(s)	1649, 1922
MhlI	GDGCHC	5 cut(s)	1414, 1534, 1824, 2121, 2441
MlsI	TGGCCA	1 cut(s)	1572
MluNI	TGGCCA	1 cut(s)	1572
MlyI	GAGTC	7 cut(s)	176, 571, 632, 672, 962, 2019, 2119
MmeI	TCCRAC	3 cut(s)	348, 1111, 2063
Mox20I	TGGCCA	1 cut(s)	1572
Mph1103I	ATGCAT	3 cut(s)	1408, 1420, 1482
MroXI	GAANNNNTTC	2 cut(s)	191, 462
MscI	TGGCCA	1 cut(s)	1572
MseI	TTAA	7 cut(s)	594, 938, 1172, 1232, 1548, 1625, 2219
MslI	CAYNNNNRTG	3 cut(s)	296, 542, 1509
Msp20I	TGGCCA	1 cut(s)	1572
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	2218
MspI	CCGG	5 cut(s)	63, 907, 1145, 1618, 1818
MspR9I	CCNGG	9 cut(s)	219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
MvaI	CCWGG	7 cut(s)	219, 567, 762, 767, 802, 1239, 1753
MvnI	CGCG	3 cut(s)	268, 2161, 2254
MwoI	GCNNNNNNNGC	6 cut(s)	1214, 1297, 1339, 1565, 2315, 2324
NciI	CCSGG	2 cut(s)	1619, 1819
NdeII	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
NlaIII	CATG	8 cut(s)	185, 235, 541, 1099, 1295, 1410, 1418, 2087
NlaIV	GGNNCC	5 cut(s)	107, 949, 1167, 1822, 2006
NmeAIII	GCCGAG	3 cut(s)	96, 2033, 2132
NmuCI	GTSAC	4 cut(s)	1308, 1597, 1801, 2011
NruI	TCGCGA	1 cut(s)	2254
NsiI	ATGCAT	3 cut(s)	1408, 1420, 1482
NspI	RCATGY	2 cut(s)	235, 1410
PaeR7I	CTCGAG	1 cut(s)	2120
PagI	TCATGA	1 cut(s)	2083
PciI	ACATGT	1 cut(s)	231
PciSI	GCTCTTC	2 cut(s)	429, 1272
PcsI	WCGNNNNNNNCGW	2 cut(s)	2005, 2165
PdmI	GAANNNNTTC	2 cut(s)	191, 462
PfeI	GAWTC	5 cut(s)	1027, 1106, 1274, 2111, 2374
PkrI	GCNGC	5 cut(s)	247, 313, 2102, 2105, 2363
PleI	GAGTC	7 cut(s)	175, 570, 631, 672, 962, 2018, 2119
PpsI	GAGTC	7 cut(s)	175, 570, 631, 672, 962, 2018, 2119
PpuMI	RGGWCCY	1 cut(s)	1541
PscI	ACATGT	1 cut(s)	231
PshBI	ATTAAT	2 cut(s)	594, 938
Psp124BI	GAGCTC	1 cut(s)	2441
Psp5II	RGGWCCY	1 cut(s)	1541
Psp6I	CCWGG	7 cut(s)	217, 565, 760, 765, 800, 1237, 1751
PspEI	GGTNACC	1 cut(s)	1434
PspGI	CCWGG	7 cut(s)	217, 565, 760, 765, 800, 1237, 1751
PspN4I	GGNNCC	5 cut(s)	107, 949, 1167, 1822, 2006
PspOMI	GGGCCC	1 cut(s)	1820
PspPI	GGNCC	8 cut(s)	224, 534, 1166, 1541, 1820, 1821, 1865, 2027
PspPPI	RGGWCCY	1 cut(s)	1541
PstNI	CAGNNNCTG	5 cut(s)	1046, 1544, 1858, 1987, 2267
PsuI	RGATCY	2 cut(s)	1649, 1922
RruI	TCGCGA	1 cut(s)	2254
RsaI	GTAC	7 cut(s)	265, 305, 511, 1816, 1977, 2136, 2423
RsaNI	GTAC	7 cut(s)	264, 304, 510, 1815, 1976, 2135, 2422
RseI	CAYNNNNRTG	3 cut(s)	296, 542, 1509
SacI	GAGCTC	1 cut(s)	2441
SapI	GCTCTTC	2 cut(s)	429, 1272
SaqAI	TTAA	7 cut(s)	594, 938, 1172, 1232, 1548, 1625, 2219
SatI	GCNGC	5 cut(s)	246, 312, 2101, 2104, 2362
Sau3AI	GATC	7 cut(s)	240, 514, 773, 841, 1649, 1922, 2295
Sau96I	GGNCC	8 cut(s)	224, 534, 1166, 1541, 1820, 1821, 1865, 2027
SchI	GAGTC	7 cut(s)	176, 571, 632, 672, 962, 2019, 2119
ScrFI	CCNGG	9 cut(s)	219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
SduI	GDGCHC	5 cut(s)	1414, 1534, 1824, 2121, 2441
SfcI	CTRYAG	3 cut(s)	198, 1536, 2139
Sfr274I	CTCGAG	1 cut(s)	2120
SinI	GGWCC	4 cut(s)	1166, 1541, 1865, 2027
SlaI	CTCGAG	1 cut(s)	2120
SmiMI	CAYNNNNRTG	3 cut(s)	296, 542, 1509
SmlI	CTYRAG	4 cut(s)	206, 2120, 2212, 2218
SmoI	CTYRAG	4 cut(s)	206, 2120, 2212, 2218
SsiI	CCGC	9 cut(s)	268, 314, 1208, 1439, 2103, 2161, 2181, 2344, 2361
SspI	AATATT	1 cut(s)	942
SspMI	CTAG	5 cut(s)	12, 519, 1496, 1653, 2055
SstI	GAGCTC	1 cut(s)	2441
StyD4I	CCNGG	9 cut(s)	217, 565, 760, 765, 800, 1237, 1617, 1751, 1817
StyI	CCWWGG	1 cut(s)	1337
TaaI	ACNGT	9 cut(s)	85, 98, 202, 308, 413, 808, 1072, 2017, 2384
TaiI	ACGT	2 cut(s)	157, 1954
TaqI	TCGA	8 cut(s)	1109, 1919, 2121, 2128, 2351, 2405, 2441, 2447
TaqII	GACCGA	1 cut(s)	1296
TatI	WGTACW	2 cut(s)	303, 509
TauI	GCSGC	2 cut(s)	2106, 2364
TfiI	GAWTC	5 cut(s)	1027, 1106, 1274, 2111, 2374
Tru1I	TTAA	7 cut(s)	594, 938, 1172, 1232, 1548, 1625, 2219
Tru9I	TTAA	7 cut(s)	594, 938, 1172, 1232, 1548, 1625, 2219
TscAI	CASTG	6 cut(s)	664, 1806, 1988, 2029, 2253, 2420
TseFI	GTSAC	4 cut(s)	1308, 1597, 1801, 2011
TseI	GCWGC	3 cut(s)	245, 311, 2100
Tsp45I	GTSAC	4 cut(s)	1308, 1597, 1801, 2011
TspDTI	ATGAA	6 cut(s)	104, 177, 1084, 1443, 1715, 2100
TspGWI	ACGGA	1 cut(s)	1093
TspRI	CASTG	6 cut(s)	664, 1806, 1988, 2029, 2253, 2420
Vha464I	CTTAAG	1 cut(s)	2218
VpaK11BI	GGWCC	4 cut(s)	1166, 1541, 1865, 2027
VspI	ATTAAT	2 cut(s)	594, 938
XapI	RAATTY	6 cut(s)	212, 251, 1001, 1676, 1896, 2443
XbaI	TCTAGA	1 cut(s)	1652
XceI	RCATGY	2 cut(s)	235, 1410
XhoI	CTCGAG	1 cut(s)	2120
XmiI	GTMKAC	1 cut(s)	796
XmnI	GAANNNNTTC	2 cut(s)	191, 462
XspI	CTAG	5 cut(s)	12, 519, 1496, 1653, 2055
Zsp2I	ATGCAT	3 cut(s)	1408, 1420, 1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.