AT3G45400

arabinosyltransferase ARAD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011385
Physical Location & Seq
Forward (+)
16651573 .. 16653728
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45400.1

Sequence Viewer

Length: 1428 bp
ATGGCAATGGTAGAGAAGAATAGTTCTGCGATTGGCTATGTAGCTAGAAATCTGTTACTGAGCTTATTCGTCGTCACGACGATCCTCTTTGCTCTTTCCTGTTACTTTGTGTTACGTTCCACTGCTCATAATCGCTTCCTTAGCTCTACATTTCCATCTAAATCATTCGTCGATGTAAGGCCGGAGAAAGCGAATTGTAGATGTGTTAAGGACGAGAAATCGTCGGTAATCGCGGGTCCTTTGAAGGTTTATATGTATAATATGGATCCAGAGTTTCATTTTGGATTGTTAGATTGGAAGAAGAAGGAAGGTAGTGATAGTAGTGTATGGCCTGATATTCAGAAGTATATACCACCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGGCTTACGTTGGATTTGCTTGCATCGGAGTATGAGAATGCACCGAGAAGTGTTGCGGCGAAGCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCGTTTTTTTCTTCGTTGAGTTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGGAATAAGGATTTGCAAGGGAAGTTGGTTACGTTTTTGACTGCTCAAGAGGAGTGGAAGAGGAGTGGTGGTAGAGATCATGTTGTTCTTGCTCATCATCCGAATAGTATGTTAGATGCTAGAAATAAGTTGTTTCCTGCAATGTTTATACTTTCGGACTTTGGAAGGTATCCTCCTACTGTGGCTAATGTTGAGAAAGATGTCATTGCGCCGTATAAGCATGTTATTAAAGCTTATGAAAACGATACATCGGGTTTCGATAGTAGACCGATTCTGCTTTACTTTCAGGGTGCTATCTACAGGAAAGATGGCGGGTTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGATGTGCATTTCTCGTTTGGGAGTGTGAGAAACGGAGGTATAAACAAAGCAAGCCAAGGAATGCACAATTCCAAGTTCTGTCTCAATATTGCCGGAGACACTCCTTCGTCAAACCGTCTCTTTGACGCCATAGCCAGTCACTGTGTTCCTGTCATTATCAGCGACGACATTGAGCTTCCTTTTGAGGATGTTATTGATTACTCTGAGTTCTCGGTGTTTGTTCGCACCTCTGATGCATTGAAAGAGAACTTCTTGGTTAACTTAATACGAGGAATAACCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAAGTGGAGAAATATTATGAGTTCCATTTTCCATCAAAGGTAGATGATGCGGTGCAGATGATATGGCAAGCGATTGCCCGTAAAGTTCCGGGTGTTAAAATGAGGATTCATAAGTCTAGAAGGTATTCTGGATCTGTTTCTGAGACCGGGAAAGAATCAAGATGGTCTTCATTGATACCTCGGAGTTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

475

Amino Acids

54.45

Weight (kDa)

8.97

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 80 - 392 5.4e-63 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45400
fragaria_vesca FvH4_4g14300 FvH4_4g14300
malus_domestica MD12G1013400.v1.1 MD14G1010900.v1.1
prunus_persica Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1
pyrus_communis pycom12g01070 pycom14g00930 pycom14g00960
rosa_chinensis RchiOBHm_Chr3g0495831
rosa_laevigata RLG00000022585
rosa_multiflora Rmu_ssc0000254.1_g000003
rosa_roxburghii Rroxscaffold_6G00389980
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500
rosa_wichuraiana Rw3G028340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 468, 522
AccI GTMKAC 1 cut(s) 826
AccII CGCG 1 cut(s) 233
AciI CCGC 4 cut(s) 233, 452, 873, 1283
AclWI GGATC 4 cut(s) 76, 260, 273, 1372
AcsI RAATTY 1 cut(s) 373
AcyI GRCGYC 1 cut(s) 1044
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 244, 373, 1159
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 1 cut(s) 361
AleI CACNNNNGTG 1 cut(s) 1216
AluBI AGCT 6 cut(s) 44, 63, 144, 482, 794, 1093
AluI AGCT 6 cut(s) 44, 63, 144, 482, 794, 1093
Alw26I GTCTC 4 cut(s) 1004, 1008, 1040, 1370
AlwI GGATC 4 cut(s) 76, 260, 273, 1372
AlwNI CAGNNNCTG 1 cut(s) 1059
AoxI GGCC 2 cut(s) 179, 329
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 1357
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 1323, 1381
AsuII TTCGAA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 1392
BbvI GCAGC 1 cut(s) 391
BccI CCATC 4 cut(s) 163, 863, 1273, 1389
BceAI ACGGC 2 cut(s) 484, 757
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 741
BcnI CCSGG 2 cut(s) 1323, 1381
BcoDI GTCTC 4 cut(s) 1004, 1008, 1040, 1370
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 5 cut(s) 45, 474, 558, 681, 1350
BfmI CTRYAG 1 cut(s) 859
BfuI GTATCC 1 cut(s) 741
BisI GCNGC 2 cut(s) 380, 453
BlsI GCNGC 2 cut(s) 381, 454
Bme1390I CCNGG 3 cut(s) 363, 1323, 1381
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 237, 267
BmrFI CCNGG 3 cut(s) 363, 1323, 1381
BmsI GCATC 4 cut(s) 428, 667, 1141, 1270
BpiI GAAGAC 1 cut(s) 1392
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 1323, 1381
Bsa29I ATCGAT 1 cut(s) 1225
BsaHI GRCGYC 1 cut(s) 1044
BsaI GGTCTC 1 cut(s) 1370
BsaJI CCNNGG 2 cut(s) 973, 1412
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 1053
Bse3DI GCAATG 3 cut(s) 12, 708, 765
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 1225
BseDI CCNNGG 2 cut(s) 973, 1412
BseGI GGATG 2 cut(s) 658, 1111
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 3 cut(s) 12, 708, 765
BseMII CTCAG 3 cut(s) 50, 1113, 1365
BseNI ACTGG 1 cut(s) 1053
BseRI GAGGAG 2 cut(s) 626, 637
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 1307
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 2 cut(s) 181, 331
BshVI ATCGAT 1 cut(s) 1225
BsiSI CCGG 4 cut(s) 182, 1011, 1322, 1380
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 4 cut(s) 1004, 1008, 1040, 1370
BsmBI CGTCTC 1 cut(s) 1040
BsmI GAATGC 2 cut(s) 439, 984
BsnI GGCC 2 cut(s) 181, 331
Bso31I GGTCTC 1 cut(s) 1370
Bsp119I TTCGAA 1 cut(s) 533
Bsp143I GATC 4 cut(s) 81, 265, 637, 1364
BspACI CCGC 4 cut(s) 233, 452, 873, 1283
BspANI GGCC 2 cut(s) 181, 331
BspCNI CTCAG 3 cut(s) 51, 1114, 1366
BspDI ATCGAT 1 cut(s) 1225
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 237, 267
BspPI GGATC 4 cut(s) 76, 260, 273, 1372
BspT104I TTCGAA 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 1370
BsrDI GCAATG 3 cut(s) 12, 708, 765
BsrI ACTGG 1 cut(s) 1053
BssECI CCNNGG 2 cut(s) 973, 1412
BssMI GATC 4 cut(s) 81, 265, 637, 1364
BssNI GRCGYC 1 cut(s) 1044
BssT1I CCWWGG 1 cut(s) 973
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 742, 1034, 1061
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 1 cut(s) 1044
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 417, 970, 1302
BstDEI CTNAG 4 cut(s) 59, 140, 1122, 1374
BstF5I GGATG 2 cut(s) 658, 1111
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 4 cut(s) 84, 268, 640, 1367
BstMAI GTCTC 4 cut(s) 1004, 1008, 1040, 1370
BstMBI GATC 4 cut(s) 81, 265, 637, 1364
BstMWI GCNNNNNNNGC 2 cut(s) 141, 778
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 3 cut(s) 361, 1321, 1379
BstSFI CTRYAG 1 cut(s) 859
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 1392
BstX2I RGATCY 2 cut(s) 265, 1364
BstYI RGATCY 2 cut(s) 265, 1364
Bsu15I ATCGAT 1 cut(s) 1225
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 2 cut(s) 181, 331
BsuTUI ATCGAT 1 cut(s) 1225
BtsCI GGATG 2 cut(s) 658, 1111
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 1057
Cac8I GCNNGC 3 cut(s) 417, 970, 1302
CaiI CAGNNNCTG 1 cut(s) 1059
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 1225
CseI GACGC 2 cut(s) 872, 1052
CspCI CAANNNNNGTGG 2 cut(s) 596, 631
CviAII CATG 2 cut(s) 641, 782
DdeI CTNAG 4 cut(s) 59, 140, 1122, 1374
DpnI GATC 4 cut(s) 83, 267, 639, 1366
DpnII GATC 4 cut(s) 81, 265, 637, 1364
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 973
Eco31I GGTCTC 1 cut(s) 1370
Eco47I GGWCC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 973
EcoT22I ATGCAT 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 973
Esp3I CGTCTC 1 cut(s) 1040
FaeI CATG 2 cut(s) 644, 785
FalI AAGNNNNNCTT 2 cut(s) 1384, 1416
FatI CATG 2 cut(s) 640, 781
FauI CCCGC 2 cut(s) 226, 866
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 2 cut(s) 380, 453
FokI GGATG 2 cut(s) 645, 1118
Fsp4HI GCNGC 2 cut(s) 380, 453
FspBI CTAG 5 cut(s) 45, 474, 558, 681, 1350
GlaI GCGC 1 cut(s) 771
GluI GCNGC 2 cut(s) 380, 453
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 181, 331
HapII CCGG 4 cut(s) 182, 1011, 1322, 1380
HgaI GACGC 2 cut(s) 872, 1052
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 1044
Hin1II CATG 2 cut(s) 644, 785
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 5 cut(s) 541, 832, 1222, 1339, 1388
HpaI GTTAAC 1 cut(s) 1177
HpaII CCGG 4 cut(s) 182, 1011, 1322, 1380
Hpy166II GTNNAC 2 cut(s) 827, 1177
Hpy188I TCNGA 9 cut(s) 342, 424, 552, 663, 718, 1123, 1150, 1375, 1416
Hpy188III TCNNGA 7 cut(s) 76, 269, 608, 887, 1350, 1362, 1392
Hpy8I GTNNAC 2 cut(s) 827, 1177
Hpy99I CGWCG 5 cut(s) 74, 82, 173, 226, 1085
HpyAV CCTTC 6 cut(s) 238, 298, 302, 720, 1032, 1347
HpyCH4III ACNGT 3 cut(s) 742, 1034, 1061
HpyCH4IV ACGT 3 cut(s) 115, 404, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 778
HpyF3I CTNAG 4 cut(s) 59, 140, 1122, 1374
HpySE526I ACGT 3 cut(s) 115, 404, 593
Hsp92I GRCGYC 1 cut(s) 1044
Hsp92II CATG 2 cut(s) 644, 785
HspAI GCGC 1 cut(s) 770
KspAI GTTAAC 1 cut(s) 1177
Kzo9I GATC 4 cut(s) 81, 265, 637, 1364
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 4 cut(s) 428, 667, 1141, 1270
MaeI CTAG 5 cut(s) 45, 474, 558, 681, 1350
MaeII ACGT 3 cut(s) 115, 404, 593
MaeIII GTNAC 6 cut(s) 54, 73, 101, 111, 589, 1055
MalI GATC 4 cut(s) 83, 267, 639, 1366
MboI GATC 4 cut(s) 81, 265, 637, 1364
MboII GAAGA 6 cut(s) 28, 310, 313, 501, 631, 1392
MflI RGATCY 2 cut(s) 265, 1364
MluCI AATT 4 cut(s) 193, 373, 469, 985
MmeI TCCRAC 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 1156
MroXI GAANNNNTTC 1 cut(s) 1357
MseI TTAA 6 cut(s) 207, 789, 1176, 1181, 1229, 1329
MslI CAYNNNNRTG 1 cut(s) 1216
MspI CCGG 4 cut(s) 182, 1011, 1322, 1380
MspR9I CCNGG 3 cut(s) 363, 1323, 1381
Mva1269I GAATGC 2 cut(s) 439, 984
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 141, 778
NciI CCSGG 2 cut(s) 1323, 1381
NdeII GATC 4 cut(s) 81, 265, 637, 1364
NlaIII CATG 2 cut(s) 644, 785
NlaIV GGNNCC 2 cut(s) 237, 267
NmuCI GTSAC 2 cut(s) 73, 1055
NsiI ATGCAT 1 cut(s) 1156
NspI RCATGY 1 cut(s) 785
NspV TTCGAA 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 1216
PctI GAATGC 2 cut(s) 439, 984
PdmI GAANNNNTTC 1 cut(s) 1357
PfeI GAWTC 5 cut(s) 541, 832, 1222, 1339, 1388
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 2 cut(s) 381, 454
PpuMI RGGWCCY 1 cut(s) 236
PsiI TTATAA 2 cut(s) 468, 522
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 237, 267
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 1059
PsuI RGATCY 2 cut(s) 265, 1364
RseI CAYNNNNRTG 1 cut(s) 1216
SaqAI TTAA 6 cut(s) 207, 789, 1176, 1181, 1229, 1329
SatI GCNGC 2 cut(s) 380, 453
Sau3AI GATC 4 cut(s) 81, 265, 637, 1364
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 363, 1323, 1381
SfaNI GCATC 4 cut(s) 428, 667, 1141, 1270
SfcI CTRYAG 1 cut(s) 859
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 1216
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 4 cut(s) 193, 373, 469, 985
SsiI CCGC 4 cut(s) 233, 452, 873, 1283
SspI AATATT 2 cut(s) 1006, 1247
SspMI CTAG 5 cut(s) 45, 474, 558, 681, 1350
StyD4I CCNGG 3 cut(s) 361, 1321, 1379
StyI CCWWGG 1 cut(s) 973
TaaI ACNGT 3 cut(s) 742, 1034, 1061
TaiI ACGT 3 cut(s) 118, 407, 596
TaqI TCGA 5 cut(s) 171, 390, 533, 819, 1225
TaqII GACCGA 1 cut(s) 844
TasI AATT 4 cut(s) 193, 373, 469, 985
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 5 cut(s) 541, 832, 1222, 1339, 1388
Tru1I TTAA 6 cut(s) 207, 789, 1176, 1181, 1229, 1329
Tru9I TTAA 6 cut(s) 207, 789, 1176, 1181, 1229, 1329
TscAI CASTG 2 cut(s) 127, 1064
TseFI GTSAC 2 cut(s) 73, 1055
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 73, 1055
TspDTI ATGAA 4 cut(s) 266, 813, 1331, 1392
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 2 cut(s) 127, 1064
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 373
XbaI TCTAGA 1 cut(s) 1349
XceI RCATGY 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 1357
XspI CTAG 5 cut(s) 45, 474, 558, 681, 1350
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.