xylogalacturonan metabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G45400 |
| fragaria_vesca | FvH4_4g14300 FvH4_4g14300 |
| malus_domestica | MD12G1013400.v1.1 MD14G1010900.v1.1 |
| prunus_persica | Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1 |
| pyrus_communis | pycom12g01070 pycom14g00930 pycom14g00960 |
| rosa_chinensis | RchiOBHm_Chr3g0495831 |
| rosa_laevigata | RLG00000022585 |
| rosa_multiflora | Rmu_ssc0000254.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00389980 |
| rosa_rugosa | Rorug03G0276800 |
| rosa_samantha | Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500 |
| rosa_wichuraiana | Rw3G028340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 343 |
| AccIII | TCCGGA | 1 cut(s) | 277 |
| AciI | CCGC | 2 cut(s) | 4, 29 |
| AcsI | RAATTY | 2 cut(s) | 173, 374 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AgsI | TTSAA | 2 cut(s) | 128, 272 |
| AjnI | CCWGG | 2 cut(s) | 153, 314 |
| Alw26I | GTCTC | 1 cut(s) | 506 |
| Aor13HI | TCCGGA | 1 cut(s) | 277 |
| AoxI | GGCC | 1 cut(s) | 147 |
| ApoI | RAATTY | 2 cut(s) | 173, 374 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 499 |
| AsuHPI | GGTGA | 3 cut(s) | 206, 304, 528 |
| AsuNHI | GCTAGC | 1 cut(s) | 233 |
| BanII | GRGCYC | 1 cut(s) | 10 |
| BccI | CCATC | 3 cut(s) | 128, 211, 541 |
| BciT130I | CCWGG | 2 cut(s) | 155, 316 |
| BciVI | GTATCC | 1 cut(s) | 522 |
| BcoDI | GTCTC | 1 cut(s) | 506 |
| BfaI | CTAG | 2 cut(s) | 234, 480 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BfuI | GTATCC | 1 cut(s) | 522 |
| Bme1390I | CCNGG | 2 cut(s) | 155, 316 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmrFI | CCNGG | 2 cut(s) | 155, 316 |
| BmsI | GCATC | 2 cut(s) | 271, 400 |
| BmtI | GCTAGC | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 2 cut(s) | 153, 154 |
| BsaWI | WCCGGW | 1 cut(s) | 277 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 134, 164, 503, 533 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| Bse3DI | GCAATG | 1 cut(s) | 186 |
| BseAI | TCCGGA | 1 cut(s) | 277 |
| BseBI | CCWGG | 2 cut(s) | 155, 316 |
| BseDI | CCNNGG | 2 cut(s) | 153, 154 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseMI | GCAATG | 1 cut(s) | 186 |
| BseMII | CTCAG | 1 cut(s) | 518 |
| Bsh1236I | CGCG | 1 cut(s) | 343 |
| BshFI | GGCC | 1 cut(s) | 149 |
| BsiSI | CCGG | 3 cut(s) | 192, 278, 452 |
| BslFI | GGGAC | 2 cut(s) | 230, 344 |
| BsmAI | GTCTC | 1 cut(s) | 506 |
| BsmBI | CGTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 2 cut(s) | 230, 344 |
| BsnI | GGCC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 10 |
| Bsp13I | TCCGGA | 1 cut(s) | 277 |
| BspACI | CCGC | 2 cut(s) | 4, 29 |
| BspANI | GGCC | 1 cut(s) | 149 |
| BspCNI | CTCAG | 1 cut(s) | 517 |
| BspEI | TCCGGA | 1 cut(s) | 277 |
| BspFNI | CGCG | 1 cut(s) | 343 |
| BspHI | TCATGA | 1 cut(s) | 262 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspOI | GCTAGC | 1 cut(s) | 237 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BsrDI | GCAATG | 1 cut(s) | 186 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| BssECI | CCNNGG | 2 cut(s) | 153, 154 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 316 |
| Bst4CI | ACNGT | 2 cut(s) | 242, 499 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 235, 432, 442 |
| BstDEI | CTNAG | 1 cut(s) | 504 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstFNI | CGCG | 1 cut(s) | 343 |
| BstMAI | GTCTC | 1 cut(s) | 506 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 2 cut(s) | 155, 316 |
| BstSCI | CCNGG | 2 cut(s) | 153, 314 |
| BstUI | CGCG | 1 cut(s) | 343 |
| BsuI | GTATCC | 1 cut(s) | 522 |
| BsuRI | GGCC | 1 cut(s) | 149 |
| BtgZI | GCGATG | 1 cut(s) | 423 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 235, 432, 442 |
| CciI | TCATGA | 1 cut(s) | 262 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| CseI | GACGC | 2 cut(s) | 233, 349 |
| CviAII | CATG | 1 cut(s) | 263 |
| CviJI | RGCY | 5 cut(s) | 8, 57, 149, 237, 455 |
| CviKI_1 | RGCY | 5 cut(s) | 8, 57, 149, 237, 455 |
| DdeI | CTNAG | 1 cut(s) | 504 |
| Eco147I | AGGCCT | 1 cut(s) | 149 |
| Eco24I | GRGCYC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 2 cut(s) | 153, 314 |
| EcoT38I | GRGCYC | 1 cut(s) | 10 |
| Esp3I | CGTCTC | 1 cut(s) | 506 |
| FaeI | CATG | 1 cut(s) | 266 |
| FaiI | YATR | 8 cut(s) | 17, 22, 26, 161, 264, 381, 427, 472 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 281, 313 |
| FaqI | GGGAC | 2 cut(s) | 230, 344 |
| FatI | CATG | 1 cut(s) | 262 |
| FokI | GGATG | 1 cut(s) | 293 |
| FriOI | GRGCYC | 1 cut(s) | 10 |
| FspBI | CTAG | 2 cut(s) | 234, 480 |
| HaeIII | GGCC | 1 cut(s) | 149 |
| HapII | CCGG | 3 cut(s) | 192, 278, 452 |
| HgaI | GACGC | 2 cut(s) | 233, 349 |
| Hin1II | CATG | 1 cut(s) | 266 |
| HinfI | GANTC | 3 cut(s) | 37, 138, 486 |
| HpaII | CCGG | 3 cut(s) | 192, 278, 452 |
| HphI | GGTGA | 3 cut(s) | 206, 304, 528 |
| Hpy166II | GTNNAC | 2 cut(s) | 307, 339 |
| Hpy188I | TCNGA | 3 cut(s) | 372, 461, 507 |
| Hpy188III | TCNNGA | 8 cut(s) | 11, 41, 128, 263, 278, 418, 480, 492 |
| Hpy8I | GTNNAC | 2 cut(s) | 307, 339 |
| HpyAV | CCTTC | 1 cut(s) | 502 |
| HpyCH4III | ACNGT | 2 cut(s) | 242, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 113 |
| HpyCH4V | TGCA | 2 cut(s) | 163, 361 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpyF3I | CTNAG | 1 cut(s) | 504 |
| HpySE526I | ACGT | 1 cut(s) | 113 |
| Hsp92II | CATG | 1 cut(s) | 266 |
| Kpn2I | TCCGGA | 1 cut(s) | 277 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| LweI | GCATC | 2 cut(s) | 271, 400 |
| MaeI | CTAG | 2 cut(s) | 234, 480 |
| MaeII | ACGT | 1 cut(s) | 113 |
| MaeIII | GTNAC | 2 cut(s) | 194, 542 |
| MboII | GAAGA | 3 cut(s) | 74, 143, 364 |
| MhlI | GDGCHC | 1 cut(s) | 10 |
| MluCI | AATT | 2 cut(s) | 173, 374 |
| MroI | TCCGGA | 1 cut(s) | 277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 499 |
| MseI | TTAA | 2 cut(s) | 288, 521 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspI | CCGG | 3 cut(s) | 192, 278, 452 |
| MspR9I | CCNGG | 2 cut(s) | 155, 316 |
| MvaI | CCWGG | 2 cut(s) | 155, 316 |
| MvnI | CGCG | 1 cut(s) | 343 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NheI | GCTAGC | 1 cut(s) | 233 |
| NlaIII | CATG | 1 cut(s) | 266 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| NmuCI | GTSAC | 1 cut(s) | 194 |
| PagI | TCATGA | 1 cut(s) | 262 |
| PasI | CCCWGGG | 1 cut(s) | 154 |
| PceI | AGGCCT | 1 cut(s) | 149 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 499 |
| PfeI | GAWTC | 3 cut(s) | 37, 138, 486 |
| Psp6I | CCWGG | 2 cut(s) | 153, 314 |
| PspGI | CCWGG | 2 cut(s) | 153, 314 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| SaqAI | TTAA | 2 cut(s) | 288, 521 |
| ScrFI | CCNGG | 2 cut(s) | 155, 316 |
| SduI | GDGCHC | 1 cut(s) | 10 |
| SetI | ASST | 5 cut(s) | 55, 116, 170, 312, 369 |
| SfaNI | GCATC | 2 cut(s) | 271, 400 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| Sse9I | AATT | 2 cut(s) | 173, 374 |
| SseBI | AGGCCT | 1 cut(s) | 149 |
| SsiI | CCGC | 2 cut(s) | 4, 29 |
| SspMI | CTAG | 2 cut(s) | 234, 480 |
| StuI | AGGCCT | 1 cut(s) | 149 |
| StyD4I | CCNGG | 2 cut(s) | 153, 314 |
| TaaI | ACNGT | 2 cut(s) | 242, 499 |
| TaiI | ACGT | 1 cut(s) | 116 |
| TaqI | TCGA | 2 cut(s) | 141, 493 |
| TasI | AATT | 2 cut(s) | 173, 374 |
| TfiI | GAWTC | 3 cut(s) | 37, 138, 486 |
| Tru1I | TTAA | 2 cut(s) | 288, 521 |
| Tru9I | TTAA | 2 cut(s) | 288, 521 |
| TscAI | CASTG | 1 cut(s) | 245 |
| TseFI | GTSAC | 1 cut(s) | 194 |
| Tsp45I | GTSAC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 2 cut(s) | 95, 479 |
| TspGWI | ACGGA | 1 cut(s) | 384 |
| TspRI | CASTG | 1 cut(s) | 245 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| XapI | RAATTY | 2 cut(s) | 173, 374 |
| XbaI | TCTAGA | 1 cut(s) | 479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 546 |
| XmnI | GAANNNNTTC | 1 cut(s) | 499 |
| XspI | CTAG | 2 cut(s) | 234, 480 |