Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011385

Physical Location & Seq

Genomic Coordinates Forward (+)

2580982 .. 2585589

Gene Structure 4608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G017800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGCTGAAAGGCATGCCTCATCTCTCGCGGTTAATACGCGGAAATCTTTGTTTTGTTTATTTATACTTACATCAACACTCTTCATATTATCTTGGTTCTTTGTGTTGCGTTCAACGGGCAGTCCTCACTTTATTGACCATAAATTATTACCCAATTCCAAGCTTCTTGCTATGATTGATAATGGTATTTCTGGAAGTGAGAGTCAAAATGATGTTGAACCCTCAGTTGGGAATCGATCAATCCTCGTGGATAAAGAAGAAGAAGAAAAACCAACAATTTCGTCCCAAGACAAAGAAGCATCCCAAGCTAACAATGATGTGAAATGTAACACCAATGGAAAATTAGCTCTCAAGGTATTCATGTATGATTTACCCCATGAATTTCATTTTGGACTTTTAGATTGGAAACCCCAAGGACGTAGTGTTTGGCCAGATCTTCAAACTAAAGTACCTGCTTATCCTGGTGGGTTGAATTTGCAACACAGTATAGAATATTGGCTGACATTGGACATCCTTGCTTCAGAACTTCCCAATCCCCCAAATGTACGTACTGCAATAAGAGTGCAGAATTCTAGTGAAGCTGACATTATTTTTATACCATTCTTTTCTTCCTTAAGCTATAACCGGTTCTCGAAAATAAATCCACACCAAAAGAAGAGCAATAACAGGTTGCTGCAAGATAAATTGGTTAAGTACGTAACAGCTCAACAGGAATGGAAGATATCAGGGGGAAGAGACCACTTAATTGTGGCTCACCATCCAAATAGCCTTCTAGACGGAAGGATGAAGCTTTGGCCTGCAACATTCATACTTTCGGACTTTGGGAGGTATCCTCCAAACATAGCAAATGTAGAGAAAGACATCATTGCCCCCTACAAGCATGTAATCAAATCCTATGTGAATGACTCGTCTACTTTCGATAGTCGTCCAACTTTGCTATACTTTCAAGGTGCAATATATCGAAAAGATGGTGGCTTTGTTCGGCAAGAGTTATTCTATCTTCTACAAGATGAAAAAGATGTACATTTTACATTTGGGAGTGTTCAAAAAGATGGAATCAAGAAGGCTTCACAGGGAATGCACACCTCAAAATTCTGCCTCAACATAGCCGGTGACACCCCGTCATCAAATCGTCTTTTTGATGCTATTGCTAGCCACTGTGTCCCTGTCATCATCAGTGATGATATTGAACTCCCATATGAGGATGTGCTTGACTACTCTGAGTTCTGCATCTTCGTTCGAACAAGGGATGCTCTTAAAAAAAACTTTCTCGTAAACCTCACCAGGAGCATTGGGATGGATGAGTGGACGCAAATGTGGAGGAGGTTGCAGGAGGTTCAAAAATTCTATGAGTTTCAGTACCCATCAAAGGAGGGTGATGCTGTCCAGATGATATGGCAAGCAGTTGCTCGCAAGGTTCCTGCTATAAGAATGAAGTTAAACAAGTCTAGACGATTCTCTCGTTCATATGTCCGCAAGGAGAAGGGGTTAAGCAGGATACCATCACCAAGTAACTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

508

Amino Acids

58.19

Weight (kDa)

9.06

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45400
fragaria_vesca	FvH4_4g14300 FvH4_4g14300
malus_domestica	MD12G1013400.v1.1 MD14G1010900.v1.1
prunus_persica	Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1
pyrus_communis	pycom12g01070 pycom14g00930 pycom14g00960
rosa_chinensis	RchiOBHm_Chr3g0495831
rosa_laevigata	RLG00000022585
rosa_multiflora	Rmu_ssc0000254.1_g000003
rosa_roxburghii	Rroxscaffold_6G00389980
rosa_rugosa	Rorug03G0276800
rosa_samantha	Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500
rosa_wichuraiana	Rw3G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	911
AccII	CGCG	2 cut(s)	29, 40
AciI	CCGC	3 cut(s)	29, 40, 1474
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	5 cut(s)	380, 472, 568, 1091, 1343
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	6 cut(s)	450, 546, 550, 695, 1023, 1361
AfiI	CCNNNNNNNGG	4 cut(s)	227, 228, 1201, 1369
AflII	CTTAAG	1 cut(s)	613
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	8 cut(s)	114, 218, 440, 472, 947, 1046, 1190, 1340
AhdI	GACNNNNNGTC	1 cut(s)	1120
AjnI	CCWGG	2 cut(s)	460, 1283
AjuI	GAANNNNNNNTTGG	4 cut(s)	210, 242, 372, 404
AluBI	AGCT	7 cut(s)	163, 308, 347, 581, 618, 704, 790
AluI	AGCT	7 cut(s)	163, 308, 347, 581, 618, 704, 790
Alw26I	GTCTC	1 cut(s)	729
AoxI	GGCC	2 cut(s)	428, 794
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	5 cut(s)	380, 472, 568, 1091, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	408, 440
AsiGI	ACCGGT	1 cut(s)	624
AsuHPI	GGTGA	5 cut(s)	746, 1124, 1273, 1388, 1497
AsuII	TTCGAA	1 cut(s)	1240
AsuNHI	GCTAGC	1 cut(s)	1151
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BalI	TGGCCA	1 cut(s)	430
BauI	CACGAG	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	660
BccI	CCATC	6 cut(s)	765, 962, 1046, 1291, 1372, 1510
BciT130I	CCWGG	2 cut(s)	462, 1285
BciVI	GTATCC	2 cut(s)	840, 1491
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	4 cut(s)	573, 773, 1152, 1449
BfrI	CTTAAG	1 cut(s)	613
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	2 cut(s)	840, 1491
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme1390I	CCNGG	2 cut(s)	462, 1285
BmeRI	GACNNNNNGTC	1 cut(s)	1120
BmiI	GGNNCC	1 cut(s)	1419
BmrFI	CCNGG	2 cut(s)	462, 1285
BmsI	GCATC	5 cut(s)	308, 1132, 1239, 1240, 1369
BmtI	GCTAGC	1 cut(s)	1155
BplI	GAGNNNNNCTC	2 cut(s)	817, 849
Bpu14I	TTCGAA	1 cut(s)	1240
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	235
BsaAI	YACGTR	2 cut(s)	548, 697
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	1472, 1502
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 228, 1201, 1369
Bse118I	RCCGGY	2 cut(s)	624, 1109
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	462, 1285
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	8 cut(s)	299, 510, 757, 789, 1210, 1255, 1302, 1306
BseLI	CCNNNNNNNGG	4 cut(s)	227, 228, 1201, 1369
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	2 cut(s)	237, 1212
BseRI	GAGGAG	1 cut(s)	1336
BseXI	GCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	584
Bsh1236I	CGCG	2 cut(s)	29, 40
BshFI	GGCC	2 cut(s)	430, 796
BshTI	ACCGGT	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	625, 1110
BslFI	GGGAC	2 cut(s)	268, 1148
BslI	CCNNNNNNNGG	4 cut(s)	227, 228, 1201, 1369
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	2 cut(s)	268, 1148
BsmI	GAATGC	1 cut(s)	1083
BsnI	GGCC	2 cut(s)	430, 796
Bso31I	GGTCTC	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	2 cut(s)	236, 433
BspACI	CCGC	3 cut(s)	29, 40, 1474
BspANI	GGCC	2 cut(s)	430, 796
BspCNI	CTCAG	2 cut(s)	236, 1213
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	29, 40
BspLI	GGNNCC	1 cut(s)	1419
BspMI	ACCTGC	1 cut(s)	460
BspOI	GCTAGC	1 cut(s)	1155
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	1240
BspTI	CTTAAG	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	729
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	2 cut(s)	624, 1109
BsrGI	TGTACA	1 cut(s)	1021
BssAI	RCCGGY	2 cut(s)	624, 1109
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	236, 433
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	462, 1285
Bst4CI	ACNGT	2 cut(s)	485, 1160
Bst6I	CTCTTC	3 cut(s)	86, 650, 727
BstAFI	CTTAAG	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	1021
BstBAI	YACGTR	2 cut(s)	548, 697
BstBI	TTCGAA	1 cut(s)	1240
BstC8I	GCNNGC	5 cut(s)	15, 798, 1153, 1401, 1411
BstDEI	CTNAG	2 cut(s)	223, 1221
BstF5I	GGATG	8 cut(s)	299, 510, 757, 789, 1210, 1255, 1302, 1306
BstFNI	CGCG	2 cut(s)	29, 40
BstKTI	GATC	2 cut(s)	239, 436
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	2 cut(s)	236, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	462, 1285
BstNSI	RCATGY	2 cut(s)	17, 884
BstSCI	CCNGG	2 cut(s)	460, 1283
BstSNI	TACGTA	2 cut(s)	548, 697
BstUI	CGCG	2 cut(s)	29, 40
BstV1I	GCAGC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	235
BsuI	GTATCC	2 cut(s)	840, 1491
BsuRI	GGCC	2 cut(s)	430, 796
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	8 cut(s)	299, 510, 757, 789, 1210, 1255, 1302, 1306
BtsIMutI	CAGTG	2 cut(s)	1156, 1183
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	5 cut(s)	15, 798, 1153, 1401, 1411
Cfr10I	RCCGGY	2 cut(s)	624, 1109
ClaI	ATCGAT	1 cut(s)	235
CseI	GACGC	1 cut(s)	1318
Csp6I	GTAC	6 cut(s)	449, 545, 549, 694, 1022, 1360
CspAI	ACCGGT	1 cut(s)	624
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	4 cut(s)	14, 361, 377, 881
CviQI	GTAC	6 cut(s)	449, 545, 549, 694, 1022, 1360
DdeI	CTNAG	2 cut(s)	223, 1221
DpnI	GATC	2 cut(s)	238, 435
DpnII	GATC	2 cut(s)	236, 433
DriI	GACNNNNNGTC	1 cut(s)	1120
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	3 cut(s)	86, 650, 727
Eam1105I	GACNNNNNGTC	1 cut(s)	1120
EarI	CTCTTC	3 cut(s)	86, 650, 727
Eco105I	TACGTA	2 cut(s)	548, 697
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	729
Eco32I	GATATC	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	460, 1283
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	17, 364, 380, 884
FaqI	GGGAC	2 cut(s)	268, 1148
FatI	CATG	4 cut(s)	13, 360, 376, 880
FauNDI	CATATG	2 cut(s)	1198, 1468
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	8 cut(s)	286, 497, 744, 796, 1217, 1262, 1309, 1313
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	4 cut(s)	573, 773, 1152, 1449
GluI	GCNGC	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	430, 796
HapII	CCGG	2 cut(s)	625, 1110
HgaI	GACGC	1 cut(s)	1318
Hin1II	CATG	4 cut(s)	17, 364, 380, 884
HindIII	AAGCTT	2 cut(s)	161, 788
HinfI	GANTC	5 cut(s)	202, 232, 905, 1056, 1455
HpaII	CCGG	2 cut(s)	625, 1110
HphI	GGTGA	5 cut(s)	746, 1124, 1273, 1388, 1497
Hpy166II	GTNNAC	3 cut(s)	912, 1276, 1308
Hpy188I	TCNGA	3 cut(s)	523, 817, 1222
Hpy188III	TCNNGA	6 cut(s)	192, 631, 773, 1060, 1387, 1449
Hpy8I	GTNNAC	3 cut(s)	912, 1276, 1308
HpyAV	CCTTC	4 cut(s)	774, 779, 1057, 1477
HpyCH4III	ACNGT	2 cut(s)	485, 1160
HpyCH4IV	ACGT	3 cut(s)	418, 547, 696
HpyCH4V	TGCA	9 cut(s)	478, 554, 565, 676, 800, 953, 1081, 1230, 1330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	223, 1221
HpySE526I	ACGT	3 cut(s)	418, 547, 696
Hsp92II	CATG	4 cut(s)	17, 364, 380, 884
Kzo9I	GATC	2 cut(s)	236, 433
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	1 cut(s)	1287
Lsp1109I	GCAGC	1 cut(s)	660
LweI	GCATC	5 cut(s)	308, 1132, 1239, 1240, 1369
MaeI	CTAG	4 cut(s)	573, 773, 1152, 1449
MaeII	ACGT	3 cut(s)	418, 547, 696
MaeIII	GTNAC	4 cut(s)	326, 697, 1112, 1511
MalI	GATC	2 cut(s)	238, 435
MboI	GATC	2 cut(s)	236, 433
MflI	RGATCY	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	430
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	211, 899
MmeI	TCCRAC	1 cut(s)	953
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	7 cut(s)	33, 614, 690, 743, 1257, 1439, 1490
MslI	CAYNNNNRTG	1 cut(s)	1295
Msp20I	TGGCCA	1 cut(s)	430
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	2 cut(s)	625, 1110
MspR9I	CCNGG	2 cut(s)	462, 1285
Mva1269I	GAATGC	1 cut(s)	1083
MvaI	CCWGG	2 cut(s)	462, 1285
MvnI	CGCG	2 cut(s)	29, 40
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeI	CATATG	2 cut(s)	1198, 1468
NdeII	GATC	2 cut(s)	236, 433
NheI	GCTAGC	1 cut(s)	1151
NlaIII	CATG	4 cut(s)	17, 364, 380, 884
NlaIV	GGNNCC	1 cut(s)	1419
NmuCI	GTSAC	1 cut(s)	1112
NspI	RCATGY	2 cut(s)	17, 884
NspV	TTCGAA	1 cut(s)	1240
PaeI	GCATGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	1459
PctI	GAATGC	1 cut(s)	1083
PfeI	GAWTC	3 cut(s)	232, 1056, 1455
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	2 cut(s)	210, 899
PpsI	GAGTC	2 cut(s)	210, 899
Ppu21I	YACGTR	2 cut(s)	548, 697
Psp6I	CCWGG	2 cut(s)	460, 1283
PspGI	CCWGG	2 cut(s)	460, 1283
PspN4I	GGNNCC	1 cut(s)	1419
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	6 cut(s)	450, 546, 550, 695, 1023, 1361
RsaNI	GTAC	6 cut(s)	449, 545, 549, 694, 1022, 1360
RseI	CAYNNNNRTG	1 cut(s)	1295
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	7 cut(s)	33, 614, 690, 743, 1257, 1439, 1490
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	2 cut(s)	236, 433
SchI	GAGTC	2 cut(s)	211, 899
ScrFI	CCNGG	2 cut(s)	462, 1285
SfaNI	GCATC	5 cut(s)	308, 1132, 1239, 1240, 1369
SfuI	TTCGAA	1 cut(s)	1240
SmiMI	CAYNNNNRTG	1 cut(s)	1295
SmlI	CTYRAG	2 cut(s)	350, 613
SmoI	CTYRAG	2 cut(s)	350, 613
SnaBI	TACGTA	2 cut(s)	548, 697
SphI	GCATGC	1 cut(s)	17
SsiI	CCGC	3 cut(s)	29, 40, 1474
SspI	AATATT	1 cut(s)	494
SspMI	CTAG	4 cut(s)	573, 773, 1152, 1449
StyD4I	CCNGG	2 cut(s)	460, 1283
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	485, 1160
TaiI	ACGT	3 cut(s)	421, 550, 699
TaqI	TCGA	5 cut(s)	235, 632, 918, 961, 1240
TatI	WGTACW	1 cut(s)	1021
TfiI	GAWTC	3 cut(s)	232, 1056, 1455
Tru1I	TTAA	7 cut(s)	33, 614, 690, 743, 1257, 1439, 1490
Tru9I	TTAA	7 cut(s)	33, 614, 690, 743, 1257, 1439, 1490
TscAI	CASTG	2 cut(s)	1163, 1183
TseFI	GTSAC	1 cut(s)	1112
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	1112
TspDTI	ATGAA	9 cut(s)	73, 349, 374, 393, 796, 800, 1026, 1448, 1455
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	1163, 1183
Vha464I	CTTAAG	1 cut(s)	613
XapI	RAATTY	5 cut(s)	380, 472, 568, 1091, 1343
XbaI	TCTAGA	2 cut(s)	772, 1448
XceI	RCATGY	2 cut(s)	17, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1515
XmiI	GTMKAC	1 cut(s)	911
XspI	CTAG	4 cut(s)	573, 773, 1152, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.