FvH4_4g14300

xylogalacturonan metabolic process

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
17892351 .. 17894719
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14300.t2

Sequence Viewer

Length: 1506 bp
ATGGGCGAAAGGACTGCATCATCCCTTATGATTGTTACTCGGAAATCTTTGTTTTGTTTATTCACATTTACATCACTACTCTTTGTACTATCTTGGGTCTTTGTGTTGCGTTCAACCAGTCGCCCCCAATTCATAGACAATACATTGTTGCCTAATTCCAAACTTCTTGCTGTGATTGACCATGCCATTTCTGCAACCGAGACACAAAATGATGTTGAATCCTCAGTTGGGAATCGATCAATCCTTGTAGATAAGGAAGAAGAAGATAAATCAACATCTTCCTCCCGGCCTAACGATGGTGTGAAATGTGACACTAATGAAAAACAAGTTCTCAAGGTTTTCATGTATGATTTACCGACTGAGTTTCATTTTGGACTCTTAGATTGGAAACCCAAAGGAGGTACTGTTTGGCCAGATCTTCAATCTGAAGTGCCGCATTATCCTGGTGGTTTGAATTTGCAACATAGTATAGAATATTGGTTAACATTGGACCTCCTTGCTTCAGAACTTCCCAGTCAACCAAATGCACGTTTTGCAATCAGAGTGCTCAATGTCAGTGAAGCTGATATTATATTTGTACCATTCTTTTCTTCCTTGAGCTATAACCGATTCTCCAAGATAGATCCACACCAAAAGAAGAGCAATAACAAGGTCCTTCAAGATAAATTGGTTCAGTATTTGACAGCTCAAAAGGAATGGAAGGACTCAGGGGGAAGAGACCACTTAATTGTGGCTCACCATCCGAATAGCCTTCTAGATGCAAGGATGAAGCTCTGGCCTGCAACTTTCATACTTTCAGACTTTGGTAGGTATCCTCCAAACATAGCCAATGTGGAGAAAGACGTCATCGCACCATATAAGCATGTGATTAAAACCTTTGAAAGTGATTCATCAACTTTTGAGAGCCGCCCTACTTTGCTCTACTTCCAAGGAGCAATATACCGCAAAGATGGTGGTTTTGCTCGACAAGAGTTGTTCTATCTTCTTAAAGATGAAAAGGATGTACATTTTGCATTTGGGACTGTTCAAAAAAATGGAATAAGAAATGCTACGCAAGGAATGCATTCCTCCAAATTTTGTCTTAACATAGCCGGCGACACCCCATCATCAAATCGCCTTTTTGATGCTATTGCTAGCCACTGTGTGCCTGTTATCATCAGTGATGACATTGAACTCCCATATGAAGATGTGCTCGACTACTCTGAGTTCTGCATATTTGTTCGTACTAGTGATGCTGTGAAAAAAGGCCATCTTGTTAACCTTATAAGAAGTATTGGTAGGCATGAGTGGACACAGATGTGGAAGAGGTTACAAGAGGTTCAACATTTCTATGAGTTTCATTATCCATCAAGAGAGGGTGACGCAATTCACATGATATGGAAAGCAGTCGCTCGAAAGGTTCCTGGAATAAGATTGAAGTTACACAAGTCTAAACGGTTGTCTCATTCACCAACCCAGAATAAGAAGGGGTTAACAAGGATACCATCACCAAAAAACTTTTGGTAG

Protein Analysis

502

Amino Acids

57.35

Weight (kDa)

8.81

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 109 - 420 1.4e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011385)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1265
AatII GACGTC 1 cut(s) 846
AciI CCGC 3 cut(s) 434, 907, 943
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 410
AcsI RAATTY 2 cut(s) 454, 1073
AcuI CTGAAG 2 cut(s) 447, 486
AcyI GRCGYC 1 cut(s) 843
AdeI CACNNNGTG 1 cut(s) 1144
AfaI GTAC 5 cut(s) 87, 403, 579, 1005, 1225
AfiI CCNNNNNNNGG 3 cut(s) 228, 296, 398
AhlI ACTAGT 1 cut(s) 1226
AjnI CCWGG 2 cut(s) 442, 1402
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AleI CACNNNNGTG 1 cut(s) 1297
AluBI AGCT 4 cut(s) 563, 600, 686, 772
AluI AGCT 4 cut(s) 563, 600, 686, 772
Alw21I GWGCWC 2 cut(s) 549, 1194
Alw26I GTCTC 3 cut(s) 194, 711, 1446
AlwI GGATC 1 cut(s) 617
AoxI GGCC 4 cut(s) 287, 410, 776, 1246
ApoI RAATTY 2 cut(s) 454, 1073
Asp700I GAANNNNTTC 1 cut(s) 1063
AspS9I GGNCC 2 cut(s) 490, 652
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 4 cut(s) 728, 1370, 1440, 1479
AsuNHI GCTAGC 1 cut(s) 1133
AvaII GGWCC 2 cut(s) 490, 652
BalI TGGCCA 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 549, 1194
BccI CCATC 7 cut(s) 290, 747, 944, 1111, 1257, 1354, 1492
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 444, 1404
BciVI GTATCC 2 cut(s) 822, 1473
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 194, 711, 1446
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 3 cut(s) 755, 1134, 1227
BfuI GTATCC 2 cut(s) 822, 1473
BglII AGATCT 1 cut(s) 415
BisI GCNGC 2 cut(s) 434, 907
BlsI GCNGC 2 cut(s) 435, 908
Bme1390I CCNGG 3 cut(s) 286, 444, 1404
Bme18I GGWCC 2 cut(s) 490, 652
BmgT120I GGNCC 2 cut(s) 490, 652
BmiI GGNNCC 1 cut(s) 1401
BmrFI CCNGG 3 cut(s) 286, 444, 1404
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 4 cut(s) 26, 748, 1114, 1222
BmtI GCTAGC 1 cut(s) 1137
BmuI ACTGGG 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 317, 616
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 1 cut(s) 928
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 296, 398
Bse118I RCCGGY 1 cut(s) 1091
Bse1I ACTGG 2 cut(s) 117, 513
BseBI CCWGG 2 cut(s) 444, 1404
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 928
BseGI GGATG 4 cut(s) 20, 739, 771, 1006
BseLI CCNNNNNNNGG 3 cut(s) 228, 296, 398
BseMII CTCAG 4 cut(s) 237, 351, 720, 1194
BseNI ACTGG 2 cut(s) 117, 513
BshFI GGCC 4 cut(s) 289, 412, 778, 1248
BshVI ATCGAT 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 549, 1194
BsiSI CCGG 2 cut(s) 286, 1092
BslFI GGGAC 1 cut(s) 1033
BslI CCNNNNNNNGG 3 cut(s) 228, 296, 398
BsmAI GTCTC 3 cut(s) 194, 711, 1446
BsmFI GGGAC 1 cut(s) 1033
BsmI GAATGC 2 cut(s) 1063, 1065
BsnI GGCC 4 cut(s) 289, 412, 778, 1248
Bso31I GGTCTC 1 cut(s) 711
Bsp1286I GDGCHC 2 cut(s) 549, 1194
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 3 cut(s) 236, 415, 622
BspACI CCGC 3 cut(s) 434, 907, 943
BspANI GGCC 4 cut(s) 289, 412, 778, 1248
BspCNI CTCAG 4 cut(s) 236, 352, 719, 1195
BspDI ATCGAT 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 1401
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 1 cut(s) 617
BspQI GCTCTTC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 1091
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 2 cut(s) 117, 513
BssAI RCCGGY 1 cut(s) 1091
BssECI CCNNGG 1 cut(s) 928
BssMI GATC 3 cut(s) 236, 415, 622
BssNI GRCGYC 1 cut(s) 843
BssT1I CCWWGG 1 cut(s) 928
Bst2UI CCWGG 2 cut(s) 444, 1404
Bst4CI ACNGT 4 cut(s) 406, 1024, 1142, 1437
Bst6I CTCTTC 3 cut(s) 632, 709, 1298
BstACI GRCGYC 1 cut(s) 843
BstAPI GCANNNNNTGC 2 cut(s) 533, 1060
BstAUI TGTACA 1 cut(s) 1003
BstC8I GCNNGC 3 cut(s) 780, 1093, 1135
BstDEI CTNAG 5 cut(s) 223, 360, 379, 706, 1203
BstF5I GGATG 4 cut(s) 20, 739, 771, 1006
BstKTI GATC 3 cut(s) 239, 418, 625
BstMAI GTCTC 3 cut(s) 194, 711, 1446
BstMBI GATC 3 cut(s) 236, 415, 622
BstMWI GCNNNNNNNGC 3 cut(s) 191, 533, 1060
BstNI CCWGG 2 cut(s) 444, 1404
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 284, 442, 1402
BstX2I RGATCY 2 cut(s) 415, 622
BstYI RGATCY 2 cut(s) 415, 622
Bsu15I ATCGAT 1 cut(s) 235
BsuI GTATCC 2 cut(s) 822, 1473
BsuRI GGCC 4 cut(s) 289, 412, 778, 1248
BsuTUI ATCGAT 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 832
BtsCI GGATG 4 cut(s) 20, 739, 771, 1006
BtsIMutI CAGTG 3 cut(s) 562, 1138, 1165
Cac8I GCNNGC 3 cut(s) 780, 1093, 1135
Cfr10I RCCGGY 1 cut(s) 1091
Cfr13I GGNCC 2 cut(s) 490, 652
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 1 cut(s) 1370
Csp6I GTAC 5 cut(s) 86, 402, 578, 1004, 1224
CspCI CAANNNNNGTGG 2 cut(s) 934, 969
CviAII CATG 5 cut(s) 182, 343, 863, 1283, 1372
CviQI GTAC 5 cut(s) 86, 402, 578, 1004, 1224
DdeI CTNAG 5 cut(s) 223, 360, 379, 706, 1203
DpnI GATC 3 cut(s) 238, 417, 624
DpnII GATC 3 cut(s) 236, 415, 622
DraIII CACNNNGTG 1 cut(s) 1144
EaeI YGGCCR 1 cut(s) 410
Eam1104I CTCTTC 3 cut(s) 632, 709, 1298
EarI CTCTTC 3 cut(s) 632, 709, 1298
Eco130I CCWWGG 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 490, 652
Eco57I CTGAAG 2 cut(s) 447, 486
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 442, 1402
EcoT14I CCWWGG 1 cut(s) 928
EcoT22I ATGCAT 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 928
FaeI CATG 5 cut(s) 185, 346, 866, 1286, 1375
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 1 cut(s) 1033
FatI CATG 5 cut(s) 181, 342, 862, 1282, 1371
FauNDI CATATG 1 cut(s) 1180
Fnu4HI GCNGC 2 cut(s) 434, 907
FokI GGATG 4 cut(s) 7, 726, 778, 1013
Fsp4HI GCNGC 2 cut(s) 434, 907
FspBI CTAG 3 cut(s) 755, 1134, 1227
GluI GCNGC 2 cut(s) 434, 907
HaeIII GGCC 4 cut(s) 289, 412, 778, 1248
HapII CCGG 2 cut(s) 286, 1092
HgaI GACGC 1 cut(s) 1370
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 5 cut(s) 185, 346, 866, 1286, 1375
HincII GTYRAC 4 cut(s) 483, 518, 1258, 1473
HindII GTYRAC 4 cut(s) 483, 518, 1258, 1473
HinfI GANTC 6 cut(s) 218, 232, 375, 609, 704, 887
HpaI GTTAAC 3 cut(s) 483, 1258, 1473
HpaII CCGG 2 cut(s) 286, 1092
HphI GGTGA 4 cut(s) 728, 1370, 1440, 1479
Hpy166II GTNNAC 5 cut(s) 483, 518, 1258, 1290, 1473
Hpy188I TCNGA 7 cut(s) 42, 427, 505, 542, 744, 799, 1204
Hpy188III TCNNGA 3 cut(s) 659, 755, 1350
Hpy8I GTNNAC 5 cut(s) 483, 518, 1258, 1290, 1473
HpyAV CCTTC 4 cut(s) 665, 694, 761, 1459
HpyCH4III ACNGT 4 cut(s) 406, 1024, 1142, 1437
HpyCH4IV ACGT 2 cut(s) 529, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 533, 1060
HpyF3I CTNAG 5 cut(s) 223, 360, 379, 706, 1203
HpySE526I ACGT 2 cut(s) 529, 843
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 5 cut(s) 185, 346, 866, 1286, 1375
KroI GCCGGC 1 cut(s) 1091
KroNI GCCGGC 1 cut(s) 1093
KspAI GTTAAC 3 cut(s) 483, 1258, 1473
Kzo9I GATC 3 cut(s) 236, 415, 622
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 1 cut(s) 932
LweI GCATC 4 cut(s) 26, 748, 1114, 1222
MaeI CTAG 3 cut(s) 755, 1134, 1227
MaeII ACGT 2 cut(s) 529, 843
MaeIII GTNAC 5 cut(s) 34, 308, 1308, 1358, 1419
MalI GATC 3 cut(s) 238, 417, 624
MboI GATC 3 cut(s) 236, 415, 622
MflI RGATCY 2 cut(s) 415, 622
MhlI GDGCHC 2 cut(s) 549, 1194
MlsI TGGCCA 1 cut(s) 412
MluCI AATT 7 cut(s) 128, 154, 454, 665, 726, 1073, 1365
MluNI TGGCCA 1 cut(s) 412
MlyI GAGTC 2 cut(s) 369, 698
MnlI CCTC 9 cut(s) 232, 292, 392, 503, 825, 1078, 1299, 1309, 1348
Mox20I TGGCCA 1 cut(s) 412
Mph1103I ATGCAT 1 cut(s) 1065
MroNI GCCGGC 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 412
MseI TTAA 7 cut(s) 482, 725, 870, 987, 1083, 1257, 1472
MslI CAYNNNNRTG 2 cut(s) 1297, 1329
Msp20I TGGCCA 1 cut(s) 412
MspI CCGG 2 cut(s) 286, 1092
MspR9I CCNGG 3 cut(s) 286, 444, 1404
Mva1269I GAATGC 2 cut(s) 1063, 1065
MvaI CCWGG 2 cut(s) 444, 1404
MwoI GCNNNNNNNGC 3 cut(s) 191, 533, 1060
NaeI GCCGGC 1 cut(s) 1093
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 1180
NdeII GATC 3 cut(s) 236, 415, 622
NgoMIV GCCGGC 1 cut(s) 1091
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 5 cut(s) 185, 346, 866, 1286, 1375
NlaIV GGNNCC 1 cut(s) 1401
NmuCI GTSAC 2 cut(s) 308, 1358
NsiI ATGCAT 1 cut(s) 1065
NspI RCATGY 1 cut(s) 866
OliI CACNNNNGTG 1 cut(s) 1297
PciSI GCTCTTC 1 cut(s) 632
PctI GAATGC 2 cut(s) 1063, 1065
PdiI GCCGGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 1063
PfeI GAWTC 4 cut(s) 218, 232, 609, 887
PfoI TCCNGGA 1 cut(s) 1402
PkrI GCNGC 2 cut(s) 435, 908
PleI GAGTC 2 cut(s) 369, 698
PpsI GAGTC 2 cut(s) 369, 698
PpuMI RGGWCCY 1 cut(s) 652
PsiI TTATAA 1 cut(s) 1265
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 442, 1402
PspGI CCWGG 2 cut(s) 442, 1402
PspN4I GGNNCC 1 cut(s) 1401
PspPI GGNCC 2 cut(s) 490, 652
PspPPI RGGWCCY 1 cut(s) 652
PsuI RGATCY 2 cut(s) 415, 622
RsaI GTAC 5 cut(s) 87, 403, 579, 1005, 1225
RsaNI GTAC 5 cut(s) 86, 402, 578, 1004, 1224
RseI CAYNNNNRTG 2 cut(s) 1297, 1329
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 7 cut(s) 482, 725, 870, 987, 1083, 1257, 1472
SatI GCNGC 2 cut(s) 434, 907
Sau3AI GATC 3 cut(s) 236, 415, 622
Sau96I GGNCC 2 cut(s) 490, 652
SchI GAGTC 2 cut(s) 369, 698
ScrFI CCNGG 3 cut(s) 286, 444, 1404
SduI GDGCHC 2 cut(s) 549, 1194
SfaNI GCATC 4 cut(s) 26, 748, 1114, 1222
SinI GGWCC 2 cut(s) 490, 652
SmiMI CAYNNNNRTG 2 cut(s) 1297, 1329
SmlI CTYRAG 2 cut(s) 332, 595
SmoI CTYRAG 2 cut(s) 332, 595
SpeI ACTAGT 1 cut(s) 1226
Sse9I AATT 7 cut(s) 128, 154, 454, 665, 726, 1073, 1365
SsiI CCGC 3 cut(s) 434, 907, 943
SspI AATATT 1 cut(s) 476
SspMI CTAG 3 cut(s) 755, 1134, 1227
StyD4I CCNGG 3 cut(s) 284, 442, 1402
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 4 cut(s) 406, 1024, 1142, 1437
TaiI ACGT 2 cut(s) 532, 846
TaqI TCGA 4 cut(s) 235, 964, 1194, 1393
TasI AATT 7 cut(s) 128, 154, 454, 665, 726, 1073, 1365
TatI WGTACW 2 cut(s) 85, 1003
TauI GCSGC 2 cut(s) 436, 909
TfiI GAWTC 4 cut(s) 218, 232, 609, 887
Tru1I TTAA 7 cut(s) 482, 725, 870, 987, 1083, 1257, 1472
Tru9I TTAA 7 cut(s) 482, 725, 870, 987, 1083, 1257, 1472
TscAI CASTG 3 cut(s) 562, 1145, 1165
TseFI GTSAC 2 cut(s) 308, 1358
Tsp45I GTSAC 2 cut(s) 308, 1358
TspRI CASTG 3 cut(s) 562, 1145, 1165
VpaK11BI GGWCC 2 cut(s) 490, 652
XapI RAATTY 2 cut(s) 454, 1073
XbaI TCTAGA 1 cut(s) 754
XceI RCATGY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 1497
XmnI GAANNNNTTC 1 cut(s) 1063
XspI CTAG 3 cut(s) 755, 1134, 1227
ZraI GACGTC 1 cut(s) 844
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.