Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011385

Physical Location & Seq

Genomic Coordinates Forward (+)

1417104 .. 1420870

Gene Structure 3767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1013400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGACAATGGCCGAAAGGAATGCTTCTTCCCTCGCTGTCATTGCTCGGAAATCTTTGTTCTTCTTATTTATAGTTACATCAACACTCTTCATATTTTCTTGGTTCTTTGTGTTGCGTTCGACGAGCATGCCTCGCTTCATTGACCATAAACTGTTACCCAATTCCAAACTTAATGCCGTGATTGACAGCGGGAGTTCTGGTGGAAGTGAGAATCAAAAGGATGTCGAACCCTCATTTGGGAATCGAGCAATCCTTGTGGACAATGAGGAAGAAGAAAAGCCATCATCTTTTTCCCAAGAAAAAGAAGCGTCCCAAGCTAACAATGGAGTAAAATGTAACACCAATGAGAAGGTAGTTCTTCTCAAGGTGTTCATGTATGATTTACCCCCCGAATTTCATTTCGGACTCTTGAATTGGAAACCCGAAAGCAGTAGCGTTTGGCCAGATCTTCAAACTAAAATACCTGCTTATCCCGGCGCGTTGAATCTGCAACACAGCATAGAATACTGGCTGACATTGGATCTCCTTGCTTCTGAACTTCCCAACCCCCCAAATGCTCGTGCTGCAATAAGAGTGCGCAATGCTAGCGAAGCTGACATTGTTTTTATACCGTTCTTTTCTTCCTTAAGCTATAACCGATTCTCCAAGATAAACCCGCACGAGAAGAAGAGCAAAAATAAGGTTCTGCAAGATAAATTGGTTAAGTATGTGACGGCTCAAAAGGAATGGAAGAGATCAGGGGGAAGAGACCACTTAATTGTGGCTCACCATCCAAATAGCCTTTTAGACGCGAGGATGAAGCTATGGCCTGCAACATTCATACTTTCGGACTTTGGGAGGTATCCTCCAAACTTAGCAAATGTGGAGAAAGATGTCATTGCCCCCTACAAGCATGTAATCAAATCCTATGTGAATGACTCCTCTACTTTTGATAGTCGGCCAACCTTGCTGTACTTCCAAGGTGCAATATATCGAAAAGATGGTGGCTTTGTTCGGCAAGAGTTATTCTATCTTCTACAAGGCGAAAAAGATGTACATTTTACATTTGGGAGTGTTAAAAAAGATGGAGTTAACAAGGCTTCCCAGGGGATGCACACCTCCAAATTCTGCCTCAACATAGCCGGTGACACCCCATCATCAAATCGCCTCTTTGACGCTATTGCTAGCCACTGCGTCCCTGTCATCATCAGTGATGAGATCGAACTCCCATACGAGGATGTGCTTGACTACTCTGAGTTCTGCATATTTGTTCGAACAAGGGATGCTCTTAAGAAGAATTTTCTCGTAAACCTCACCAGGAACATAGGGAGGGACGAGTGGACGCGAATGTGGAAGAGGTTGCAGGAGGTTCAGAAATTTTATGAGTTTCAGTTCCCATCAAAGGAGGGCGATGCTGTCCAGATGATATGGCAAGCAGTTGCTCGCAGGGTTCCGGCTATAAGAATGAAGTTACACAAGTCTAGACGATTCTCCCATTCAATTTCTCGCGAGGGGAAGGGGGTAAGCAGGATACCATCACCAAGTAACTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

512

Amino Acids

58.48

Weight (kDa)

9.33

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	121 - 429	1.8e-61	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45400
fragaria_vesca	FvH4_4g14300 FvH4_4g14300
malus_domestica	MD12G1013400.v1.1 MD14G1010900.v1.1
prunus_persica	Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1
pyrus_communis	pycom12g01070 pycom14g00930 pycom14g00960
rosa_chinensis	RchiOBHm_Chr3g0495831
rosa_laevigata	RLG00000022585
rosa_multiflora	Rmu_ssc0000254.1_g000003
rosa_roxburghii	Rroxscaffold_6G00389980
rosa_rugosa	Rorug03G0276800
rosa_samantha	Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500
rosa_wichuraiana	Rw3G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	472
AccII	CGCG	4 cut(s)	479, 791, 1324, 1488
AciI	CCGC	2 cut(s)	189, 656
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	3 cut(s)	9, 440, 938
AcsI	RAATTY	4 cut(s)	392, 1103, 1276, 1355
AfaI	GTAC	2 cut(s)	953, 1035
AfiI	CCNNNNNNNGG	4 cut(s)	236, 237, 1213, 1381
AflII	CTTAAG	2 cut(s)	625, 1268
AgsI	TTSAA	4 cut(s)	412, 452, 484, 1479
AjnI	CCWGG	2 cut(s)	1083, 1295
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	4 cut(s)	317, 593, 630, 802
AluI	AGCT	4 cut(s)	317, 593, 630, 802
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	528
AoxI	GGCC	4 cut(s)	9, 440, 806, 938
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	4 cut(s)	392, 1103, 1276, 1355
AspLEI	GCGC	2 cut(s)	479, 579
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	4 cut(s)	758, 1136, 1285, 1509
AsuII	TTCGAA	1 cut(s)	1252
AsuNHI	GCTAGC	2 cut(s)	584, 1163
BalI	TGGCCA	1 cut(s)	442
BauI	CACGAG	2 cut(s)	558, 659
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	7 cut(s)	289, 777, 974, 1058, 1141, 1384, 1522
BceAI	ACGGC	2 cut(s)	161, 729
BcgI	CGANNNNNNTGC	3 cut(s)	36, 109, 143
BciT130I	CCWGG	2 cut(s)	1085, 1297
BciVI	GTATCC	2 cut(s)	852, 1503
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	3 cut(s)	585, 1164, 1461
BfrI	CTTAAG	2 cut(s)	625, 1268
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	2 cut(s)	852, 1503
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	3 cut(s)	474, 1085, 1297
BmiI	GGNNCC	1 cut(s)	1431
BmrFI	CCNGG	3 cut(s)	474, 1085, 1297
BmsI	GCATC	3 cut(s)	1080, 1252, 1381
BmtI	GCTAGC	2 cut(s)	588, 1167
BplI	GAGNNNNNCTC	4 cut(s)	115, 147, 829, 861
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	3 cut(s)	958, 1083, 1084
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 626, 656
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 237, 1213, 1381
Bse118I	RCCGGY	1 cut(s)	1121
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	3 cut(s)	39, 586, 876
BseBI	CCWGG	2 cut(s)	1085, 1297
BseDI	CCNNGG	3 cut(s)	958, 1083, 1084
BseGI	GGATG	6 cut(s)	226, 769, 801, 1095, 1222, 1267
BseLI	CCNNNNNNNGG	4 cut(s)	236, 237, 1213, 1381
BseMI	GCAATG	3 cut(s)	39, 586, 876
BseMII	CTCAG	1 cut(s)	1224
BseNI	ACTGG	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	910
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	4 cut(s)	479, 791, 1324, 1488
BshFI	GGCC	4 cut(s)	11, 442, 808, 940
BsiSI	CCGG	3 cut(s)	474, 1122, 1433
BslFI	GGGAC	3 cut(s)	295, 1160, 1325
BslI	CCNNNNNNNGG	4 cut(s)	236, 237, 1213, 1381
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	3 cut(s)	295, 1160, 1325
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	11, 442, 808, 940
Bso31I	GGTCTC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	1252
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	445, 520, 734, 1197
Bsp68I	TCGCGA	1 cut(s)	1488
BspACI	CCGC	2 cut(s)	189, 656
BspANI	GGCC	4 cut(s)	11, 442, 808, 940
BspCNI	CTCAG	1 cut(s)	1225
BspFNI	CGCG	4 cut(s)	479, 791, 1324, 1488
BspLI	GGNNCC	1 cut(s)	1431
BspMI	ACCTGC	1 cut(s)	472
BspOI	GCTAGC	2 cut(s)	588, 1167
BspPI	GGATC	1 cut(s)	528
BspQI	GCTCTTC	1 cut(s)	662
BspT104I	TTCGAA	1 cut(s)	1252
BspTI	CTTAAG	2 cut(s)	625, 1268
BspTNI	GGTCTC	1 cut(s)	741
BsrDI	GCAATG	3 cut(s)	39, 586, 876
BsrFI	RCCGGY	1 cut(s)	1121
BsrGI	TGTACA	1 cut(s)	1033
BsrI	ACTGG	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	1121
BssECI	CCNNGG	3 cut(s)	958, 1083, 1084
BssMI	GATC	4 cut(s)	445, 520, 734, 1197
BssSI	CACGAG	2 cut(s)	558, 659
BssT1I	CCWWGG	1 cut(s)	958
Bst2BI	CACGAG	2 cut(s)	558, 659
Bst2UI	CCWGG	2 cut(s)	1085, 1297
Bst4CI	ACNGT	2 cut(s)	153, 612
Bst6I	CTCTTC	5 cut(s)	92, 662, 725, 739, 1328
BstAFI	CTTAAG	2 cut(s)	625, 1268
BstAUI	TGTACA	1 cut(s)	1033
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	6 cut(s)	128, 586, 810, 1165, 1413, 1423
BstDEI	CTNAG	2 cut(s)	853, 1233
BstF5I	GGATG	6 cut(s)	226, 769, 801, 1095, 1222, 1267
BstFNI	CGCG	4 cut(s)	479, 791, 1324, 1488
BstHHI	GCGC	2 cut(s)	479, 579
BstKTI	GATC	4 cut(s)	448, 523, 737, 1200
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	4 cut(s)	445, 520, 734, 1197
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 132, 314, 563, 585, 590, 946
BstNI	CCWGG	2 cut(s)	1085, 1297
BstNSI	RCATGY	2 cut(s)	130, 896
BstSCI	CCNGG	3 cut(s)	472, 1083, 1295
BstUI	CGCG	4 cut(s)	479, 791, 1324, 1488
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	445, 520
BstYI	RGATCY	2 cut(s)	445, 520
BsuI	GTATCC	2 cut(s)	852, 1503
BsuRI	GGCC	4 cut(s)	11, 442, 808, 940
BtgZI	GCGATG	1 cut(s)	1404
BtsCI	GGATG	6 cut(s)	226, 769, 801, 1095, 1222, 1267
BtsI	GCAGTG	1 cut(s)	1168
BtsIMutI	CAGTG	2 cut(s)	1168, 1195
BtuMI	TCGCGA	1 cut(s)	1488
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	6 cut(s)	128, 586, 810, 1165, 1413, 1423
CfoI	GCGC	2 cut(s)	479, 579
Cfr10I	RCCGGY	1 cut(s)	1121
CseI	GACGC	5 cut(s)	297, 797, 1162, 1163, 1330
Csp6I	GTAC	2 cut(s)	952, 1034
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	3 cut(s)	127, 373, 893
CviQI	GTAC	2 cut(s)	952, 1034
DdeI	CTNAG	2 cut(s)	853, 1233
DpnI	GATC	4 cut(s)	447, 522, 736, 1199
DpnII	GATC	4 cut(s)	445, 520, 734, 1197
EaeI	YGGCCR	3 cut(s)	9, 440, 938
Eam1104I	CTCTTC	5 cut(s)	92, 662, 725, 739, 1328
EarI	CTCTTC	5 cut(s)	92, 662, 725, 739, 1328
Eco130I	CCWWGG	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	1083, 1295
EcoT14I	CCWWGG	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	958
FaeI	CATG	3 cut(s)	130, 376, 896
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	3 cut(s)	295, 1160, 1325
FatI	CATG	3 cut(s)	126, 372, 892
FauI	CCCGC	2 cut(s)	182, 663
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	6 cut(s)	233, 756, 808, 1102, 1229, 1274
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	3 cut(s)	585, 1164, 1461
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	2 cut(s)	478, 578
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	11, 442, 808, 940
HapII	CCGG	3 cut(s)	474, 1122, 1433
HgaI	GACGC	5 cut(s)	297, 797, 1162, 1163, 1330
HhaI	GCGC	2 cut(s)	479, 579
Hin1II	CATG	3 cut(s)	130, 376, 896
Hin6I	GCGC	2 cut(s)	477, 577
HinP1I	GCGC	2 cut(s)	477, 577
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	7 cut(s)	211, 241, 405, 484, 639, 917, 1467
HpaI	GTTAAC	1 cut(s)	1072
HpaII	CCGG	3 cut(s)	474, 1122, 1433
HphI	GGTGA	4 cut(s)	758, 1136, 1285, 1509
Hpy166II	GTNNAC	4 cut(s)	259, 1072, 1288, 1320
Hpy188I	TCNGA	6 cut(s)	48, 404, 535, 829, 1234, 1353
Hpy188III	TCNNGA	4 cut(s)	409, 1399, 1461, 1487
Hpy8I	GTNNAC	4 cut(s)	259, 1072, 1288, 1320
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	343, 1489
HpyCH4III	ACNGT	2 cut(s)	153, 612
HpyCH4V	TGCA	8 cut(s)	490, 566, 688, 812, 965, 1093, 1242, 1342
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 132, 314, 563, 585, 590, 946
HpyF3I	CTNAG	2 cut(s)	853, 1233
Hsp92II	CATG	3 cut(s)	130, 376, 896
HspAI	GCGC	2 cut(s)	477, 577
KspAI	GTTAAC	1 cut(s)	1072
Kzo9I	GATC	4 cut(s)	445, 520, 734, 1197
LguI	GCTCTTC	1 cut(s)	662
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	3 cut(s)	1080, 1252, 1381
MaeI	CTAG	3 cut(s)	585, 1164, 1461
MaeIII	GTNAC	7 cut(s)	73, 153, 335, 709, 1124, 1449, 1523
MalI	GATC	4 cut(s)	447, 522, 736, 1199
MboI	GATC	4 cut(s)	445, 520, 734, 1197
MflI	RGATCY	2 cut(s)	445, 520
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	9 cut(s)	160, 392, 412, 695, 756, 1103, 1276, 1355, 1479
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	2 cut(s)	399, 911
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	7 cut(s)	171, 626, 702, 755, 1056, 1071, 1269
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	2 cut(s)	625, 1268
MspI	CCGG	3 cut(s)	474, 1122, 1433
MspR9I	CCNGG	3 cut(s)	474, 1085, 1297
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	1085, 1297
MvnI	CGCG	4 cut(s)	479, 791, 1324, 1488
MwoI	GCNNNNNNNGC	7 cut(s)	41, 132, 314, 563, 585, 590, 946
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	445, 520, 734, 1197
NheI	GCTAGC	2 cut(s)	584, 1163
NlaIII	CATG	3 cut(s)	130, 376, 896
NlaIV	GGNNCC	1 cut(s)	1431
NmuCI	GTSAC	2 cut(s)	709, 1124
NruI	TCGCGA	1 cut(s)	1488
NsbI	TGCGCA	1 cut(s)	578
NspI	RCATGY	2 cut(s)	130, 896
NspV	TTCGAA	1 cut(s)	1252
PaeI	GCATGC	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	1084
PciSI	GCTCTTC	1 cut(s)	662
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	5 cut(s)	211, 241, 484, 639, 1467
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	399, 911
PpsI	GAGTC	2 cut(s)	399, 911
Psp6I	CCWGG	2 cut(s)	1083, 1295
PspGI	CCWGG	2 cut(s)	1083, 1295
PspN4I	GGNNCC	1 cut(s)	1431
PsuI	RGATCY	2 cut(s)	445, 520
RruI	TCGCGA	1 cut(s)	1488
RsaI	GTAC	2 cut(s)	953, 1035
RsaNI	GTAC	2 cut(s)	952, 1034
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	7 cut(s)	171, 626, 702, 755, 1056, 1071, 1269
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	4 cut(s)	445, 520, 734, 1197
SchI	GAGTC	2 cut(s)	399, 911
ScrFI	CCNGG	3 cut(s)	474, 1085, 1297
SfaNI	GCATC	3 cut(s)	1080, 1252, 1381
SfuI	TTCGAA	1 cut(s)	1252
SmlI	CTYRAG	3 cut(s)	362, 625, 1268
SmoI	CTYRAG	3 cut(s)	362, 625, 1268
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	9 cut(s)	160, 392, 412, 695, 756, 1103, 1276, 1355, 1479
SsiI	CCGC	2 cut(s)	189, 656
SspMI	CTAG	3 cut(s)	585, 1164, 1461
StyD4I	CCNGG	3 cut(s)	472, 1083, 1295
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	2 cut(s)	153, 612
TaqI	TCGA	6 cut(s)	119, 225, 244, 973, 1200, 1252
TasI	AATT	9 cut(s)	160, 392, 412, 695, 756, 1103, 1276, 1355, 1479
TatI	WGTACW	2 cut(s)	951, 1033
TfiI	GAWTC	5 cut(s)	211, 241, 484, 639, 1467
Tru1I	TTAA	7 cut(s)	171, 626, 702, 755, 1056, 1071, 1269
Tru9I	TTAA	7 cut(s)	171, 626, 702, 755, 1056, 1071, 1269
TscAI	CASTG	2 cut(s)	1175, 1195
TseFI	GTSAC	2 cut(s)	709, 1124
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	709, 1124
TspDTI	ATGAA	7 cut(s)	79, 127, 361, 386, 808, 812, 1460
TspRI	CASTG	2 cut(s)	1175, 1195
Vha464I	CTTAAG	2 cut(s)	625, 1268
XapI	RAATTY	4 cut(s)	392, 1103, 1276, 1355
XbaI	TCTAGA	1 cut(s)	1460
XceI	RCATGY	2 cut(s)	130, 896
XcmI	CCANNNNNNNNNTGG	2 cut(s)	320, 1527
XspI	CTAG	3 cut(s)	585, 1164, 1461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.