Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011385

Physical Location & Seq

Genomic Coordinates Forward (+)

1060528 .. 1063846

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1010900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGGAATTACAATGGCCGAAAGGAATGTTTCGTCCCTCGCTGTCATTACTCGAAAATCTTTGTTCTTTTTGTTTATAGTTGCATCAACACTCTTCATATTATCTTGGTTCTTTGTGTTGCGTTCGACGGGCAGTCCTCGCTTCATTGACCATAAATTGTTACCCAATTCCAAGCTTAATGCCGTTATTGGCAGCAGGAGTTCTGGAAGTGAGAGTCAAAAAGATGTCGAACCCTCAACTGGGAATCGAGCAATCCTTGTGGATAATGAGGAAGAAGAAAAGCCATCATCTTCATCCCAAGAAAAAGAAGCGTCCCAAGCTAACAATGGTGTCAGATGTAACACAAATGAGAAAGTAGTTCTCAAGGTGTTCATGTACGATTTACCCCCCGAATTTCATTTCGGACTCCTGAATTGGAAACCCCAAGGGCGTAGCGTTTGGCCAGATTTTCATACTAAAATACCTGCTTATCCCGGCGGGTTGAATTTGCAACACAGTATAGAATATTGGCTGACACTGGACCTCCTTGCTTCGGAACTTCCCAACCCACCAAATGCTCGTGCTGCAATGAGAGTGCGCAATGCTAGCGAAGCTGACATTATTTTTATACCGTTCTTTTCTTCCTTAAGCTATAACCGATTCTCCAAGAGAAACCCGCACCAGAAGAAAAGCAGTAATAAGGTGCTGCAAGATAAACTGGTTAAGTATGTGACTGCTCAAAGGGAATGGAAGAGGTCAGGGGGAAGAGACCACTTAATTGTGGCTCACCATCCAAATAGCCTTTTAGACGCGAGGATGAGTCTATGGCCTGCAACATTCATACTTTCGGACTTTGGGAGGTATCCTCCAAACGTAGCAAATGTGGAGAAAGATGTCATTGCTCCCTACAAGCATGTAATCAAATCCTATGTGAATGACTCGTCTACTTTTGATAGTCGGCCAACTTTGCTGTACTTCCAAGGCGCGATATATCGAAAGGATGGTGGCTTTGTTCGGCAAGAGTTGTTCTATCTTCTACAAGACGAAAAAGATGTTCATTTCACATTTGGGAGTGTTCAAAAAGATGGAATCAACAAGGCCTCCCAGGGTATGCACACCTCCAAATTCTGCCTCAACATAGCTGGTGACACCCCATCATCAAATCGCCTCTTTGACGCTATTGCTAGCCACTGTGTCCCCGTCATCATCAGTGATGATATTGAACTTCCGTACGAGGATGTGCTTGACTACTCTGAGTTCTGCATATTTATTCGAACAAGGGATGCTCTTAAGCAGAACTTTCTCGTAAACCTCACCAGGAACATTGGGAGGGACGAGTGGACGCGAATGTGGAAGAAGTTGCAGGAGGTTCAGAAATTCTATGAGTTTCAGTTTCCATCAAGGGAGGGCGATGCTGTCCAGATGATATGGCAAGCAGTTGCTCGCAGAGTTCCGGCTATCAGAATGAAGTTACACAAGTCTAGACGATTCTCTCGAACAGTTTCTCGGAAGGAGACGGGATTAAGCAGGATACCATCACCAAGTAACTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

512

Amino Acids

58.56

Weight (kDa)

9.49

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	120 - 429	3.5e-62	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45400
fragaria_vesca	FvH4_4g14300 FvH4_4g14300
malus_domestica	MD12G1013400.v1.1 MD14G1010900.v1.1
prunus_persica	Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1
pyrus_communis	pycom12g01070 pycom14g00930 pycom14g00960
rosa_chinensis	RchiOBHm_Chr3g0495831
rosa_laevigata	RLG00000022585
rosa_multiflora	Rmu_ssc0000254.1_g000003
rosa_roxburghii	Rroxscaffold_6G00389980
rosa_rugosa	Rorug03G0276800
rosa_samantha	Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500
rosa_wichuraiana	Rw3G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	923
AccII	CGCG	3 cut(s)	791, 965, 1324
AciI	CCGC	2 cut(s)	477, 656
AcoI	YGGCCR	3 cut(s)	15, 440, 938
AcsI	RAATTY	4 cut(s)	392, 484, 1103, 1355
AfaI	GTAC	3 cut(s)	377, 953, 1211
AfiI	CCNNNNNNNGG	3 cut(s)	239, 240, 532
AflII	CTTAAG	2 cut(s)	625, 1268
AgsI	TTSAA	3 cut(s)	484, 1058, 1202
AhdI	GACNNNNNGTC	1 cut(s)	132
AjnI	CCWGG	2 cut(s)	1083, 1295
AluBI	AGCT	5 cut(s)	175, 320, 593, 630, 1121
AluI	AGCT	5 cut(s)	175, 320, 593, 630, 1121
Alw26I	GTCTC	2 cut(s)	741, 1487
AoxI	GGCC	5 cut(s)	15, 440, 806, 938, 1077
ApeKI	GCWGC	3 cut(s)	192, 563, 685
ApoI	RAATTY	4 cut(s)	392, 484, 1103, 1355
Asp700I	GAANNNNTTC	1 cut(s)	1480
AspLEI	GCGC	2 cut(s)	579, 965
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	4 cut(s)	758, 1136, 1285, 1509
AsuII	TTCGAA	1 cut(s)	1252
AsuNHI	GCTAGC	2 cut(s)	584, 1163
AvaII	GGWCC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	442
BauI	CACGAG	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	204, 550, 672
BccI	CCATC	7 cut(s)	292, 777, 974, 1058, 1141, 1384, 1522
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	1085, 1297
BciVI	GTATCC	2 cut(s)	852, 1503
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	741, 1487
BfaI	CTAG	3 cut(s)	585, 1164, 1461
BfrI	CTTAAG	2 cut(s)	625, 1268
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	2 cut(s)	852, 1503
BisI	GCNGC	3 cut(s)	193, 564, 686
BlsI	GCNGC	3 cut(s)	194, 565, 687
Bme1390I	CCNGG	3 cut(s)	474, 1085, 1297
Bme18I	GGWCC	1 cut(s)	520
BmeRI	GACNNNNNGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	474, 1085, 1297
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	92, 1252, 1381
BmtI	GCTAGC	2 cut(s)	588, 1167
BmuI	ACTGGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	4 cut(s)	424, 958, 1083, 1084
BsaXI	ACNNNNNCTCC	6 cut(s)	507, 537, 626, 656, 1064, 1094
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 240, 532
Bse1I	ACTGG	3 cut(s)	244, 522, 702
Bse3DI	GCAATG	3 cut(s)	573, 586, 876
BseBI	CCWGG	2 cut(s)	1085, 1297
BseDI	CCNNGG	4 cut(s)	424, 958, 1083, 1084
BseGI	GGATG	6 cut(s)	293, 769, 801, 985, 1222, 1267
BseLI	CCNNNNNNNGG	3 cut(s)	239, 240, 532
BseMI	GCAATG	3 cut(s)	573, 586, 876
BseMII	CTCAG	1 cut(s)	1224
BseNI	ACTGG	3 cut(s)	244, 522, 702
BseXI	GCAGC	3 cut(s)	204, 550, 672
Bsh1236I	CGCG	3 cut(s)	791, 965, 1324
BshFI	GGCC	5 cut(s)	17, 442, 808, 940, 1079
BsiSI	CCGG	2 cut(s)	474, 1433
BsiWI	CGTACG	1 cut(s)	1209
BslFI	GGGAC	4 cut(s)	19, 298, 1160, 1325
BslI	CCNNNNNNNGG	3 cut(s)	239, 240, 532
BsmAI	GTCTC	2 cut(s)	741, 1487
BsmBI	CGTCTC	1 cut(s)	1487
BsmFI	GGGAC	4 cut(s)	19, 298, 1160, 1325
BsnI	GGCC	5 cut(s)	17, 442, 808, 940, 1079
Bso31I	GGTCTC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	1252
BspACI	CCGC	2 cut(s)	477, 656
BspANI	GGCC	5 cut(s)	17, 442, 808, 940, 1079
BspCNI	CTCAG	1 cut(s)	1225
BspFNI	CGCG	3 cut(s)	791, 965, 1324
BspMI	ACCTGC	1 cut(s)	472
BspOI	GCTAGC	2 cut(s)	588, 1167
BspT104I	TTCGAA	1 cut(s)	1252
BspTI	CTTAAG	2 cut(s)	625, 1268
BspTNI	GGTCTC	1 cut(s)	741
BsrDI	GCAATG	3 cut(s)	573, 586, 876
BsrI	ACTGG	3 cut(s)	244, 522, 702
BssECI	CCNNGG	4 cut(s)	424, 958, 1083, 1084
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	424, 958
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	2 cut(s)	1085, 1297
Bst4CI	ACNGT	4 cut(s)	497, 612, 1172, 1480
Bst6I	CTCTTC	3 cut(s)	98, 725, 739
BstAFI	CTTAAG	2 cut(s)	625, 1268
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	5 cut(s)	586, 810, 1165, 1413, 1423
BstDEI	CTNAG	1 cut(s)	1233
BstF5I	GGATG	6 cut(s)	293, 769, 801, 985, 1222, 1267
BstFNI	CGCG	3 cut(s)	791, 965, 1324
BstHHI	GCGC	2 cut(s)	579, 965
BstMAI	GTCTC	2 cut(s)	741, 1487
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 317, 563, 585, 590, 946
BstNI	CCWGG	2 cut(s)	1085, 1297
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	3 cut(s)	472, 1083, 1295
BstUI	CGCG	3 cut(s)	791, 965, 1324
BstV1I	GCAGC	3 cut(s)	204, 550, 672
BsuI	GTATCC	2 cut(s)	852, 1503
BsuRI	GGCC	5 cut(s)	17, 442, 808, 940, 1079
BtgZI	GCGATG	1 cut(s)	1404
BtsCI	GGATG	6 cut(s)	293, 769, 801, 985, 1222, 1267
BtsIMutI	CAGTG	3 cut(s)	515, 1168, 1195
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	5 cut(s)	586, 810, 1165, 1413, 1423
CfoI	GCGC	2 cut(s)	579, 965
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	4 cut(s)	300, 797, 1163, 1330
Csp6I	GTAC	3 cut(s)	376, 952, 1210
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	2 cut(s)	373, 893
CviQI	GTAC	3 cut(s)	376, 952, 1210
DdeI	CTNAG	1 cut(s)	1233
DriI	GACNNNNNGTC	1 cut(s)	132
EaeI	YGGCCR	3 cut(s)	15, 440, 938
Eam1104I	CTCTTC	3 cut(s)	98, 725, 739
Eam1105I	GACNNNNNGTC	1 cut(s)	132
EarI	CTCTTC	3 cut(s)	98, 725, 739
Eco130I	CCWWGG	2 cut(s)	424, 958
Eco147I	AGGCCT	1 cut(s)	1079
Eco31I	GGTCTC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	1083, 1295
EcoT14I	CCWWGG	2 cut(s)	424, 958
ErhI	CCWWGG	2 cut(s)	424, 958
Esp3I	CGTCTC	1 cut(s)	1487
FaeI	CATG	2 cut(s)	376, 896
FalI	AAGNNNNNCTT	2 cut(s)	1262, 1294
FaqI	GGGAC	4 cut(s)	19, 298, 1160, 1325
FatI	CATG	2 cut(s)	372, 892
FauI	CCCGC	2 cut(s)	470, 663
FblI	GTMKAC	1 cut(s)	923
Fnu4HI	GCNGC	3 cut(s)	193, 564, 686
FokI	GGATG	6 cut(s)	280, 756, 808, 992, 1229, 1274
Fsp4HI	GCNGC	3 cut(s)	193, 564, 686
FspBI	CTAG	3 cut(s)	585, 1164, 1461
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	2 cut(s)	578, 964
GluI	GCNGC	3 cut(s)	193, 564, 686
HaeIII	GGCC	5 cut(s)	17, 442, 808, 940, 1079
HapII	CCGG	2 cut(s)	474, 1433
HgaI	GACGC	4 cut(s)	300, 797, 1163, 1330
HhaI	GCGC	2 cut(s)	579, 965
Hin1II	CATG	2 cut(s)	376, 896
Hin6I	GCGC	2 cut(s)	577, 963
HinP1I	GCGC	2 cut(s)	577, 963
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	8 cut(s)	214, 244, 405, 639, 799, 917, 1068, 1467
HpaII	CCGG	2 cut(s)	474, 1433
HphI	GGTGA	4 cut(s)	758, 1136, 1285, 1509
Hpy166II	GTNNAC	3 cut(s)	924, 1288, 1320
Hpy188I	TCNGA	8 cut(s)	335, 404, 535, 829, 1234, 1353, 1442, 1488
Hpy188III	TCNNGA	5 cut(s)	204, 409, 1399, 1461, 1473
Hpy8I	GTNNAC	3 cut(s)	924, 1288, 1320
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	1483
HpyCH4III	ACNGT	4 cut(s)	497, 612, 1172, 1480
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	8 cut(s)	83, 490, 566, 688, 812, 1093, 1242, 1342
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 317, 563, 585, 590, 946
HpyF3I	CTNAG	1 cut(s)	1233
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	2 cut(s)	376, 896
HspAI	GCGC	2 cut(s)	577, 963
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	3 cut(s)	204, 550, 672
LweI	GCATC	3 cut(s)	92, 1252, 1381
MaeI	CTAG	3 cut(s)	585, 1164, 1461
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	6 cut(s)	159, 338, 709, 1124, 1449, 1523
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	9 cut(s)	6, 155, 166, 392, 412, 484, 756, 1103, 1355
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	4 cut(s)	223, 399, 808, 911
Mox20I	TGGCCA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	1480
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	6 cut(s)	177, 626, 702, 755, 1269, 1502
Msp20I	TGGCCA	1 cut(s)	442
MspCI	CTTAAG	2 cut(s)	625, 1268
MspI	CCGG	2 cut(s)	474, 1433
MspR9I	CCNGG	3 cut(s)	474, 1085, 1297
MvaI	CCWGG	2 cut(s)	1085, 1297
MvnI	CGCG	3 cut(s)	791, 965, 1324
MwoI	GCNNNNNNNGC	6 cut(s)	138, 317, 563, 585, 590, 946
NciI	CCSGG	1 cut(s)	474
NheI	GCTAGC	2 cut(s)	584, 1163
NlaIII	CATG	2 cut(s)	376, 896
NmuCI	GTSAC	2 cut(s)	709, 1124
NsbI	TGCGCA	1 cut(s)	578
NspI	RCATGY	1 cut(s)	896
NspV	TTCGAA	1 cut(s)	1252
PasI	CCCWGGG	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	1079
PcsI	WCGNNNNNNNCGW	1 cut(s)	1471
PdmI	GAANNNNTTC	1 cut(s)	1480
PfeI	GAWTC	4 cut(s)	244, 639, 1068, 1467
Pfl23II	CGTACG	1 cut(s)	1209
PkrI	GCNGC	3 cut(s)	194, 565, 687
PleI	GAGTC	4 cut(s)	222, 399, 807, 911
PpsI	GAGTC	4 cut(s)	222, 399, 807, 911
Psp6I	CCWGG	2 cut(s)	1083, 1295
PspGI	CCWGG	2 cut(s)	1083, 1295
PspLI	CGTACG	1 cut(s)	1209
PspPI	GGNCC	1 cut(s)	520
RsaI	GTAC	3 cut(s)	377, 953, 1211
RsaNI	GTAC	3 cut(s)	376, 952, 1210
SaqAI	TTAA	6 cut(s)	177, 626, 702, 755, 1269, 1502
SatI	GCNGC	3 cut(s)	193, 564, 686
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	4 cut(s)	223, 399, 808, 911
ScrFI	CCNGG	3 cut(s)	474, 1085, 1297
SfaNI	GCATC	3 cut(s)	92, 1252, 1381
SfuI	TTCGAA	1 cut(s)	1252
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	3 cut(s)	362, 625, 1268
SmoI	CTYRAG	3 cut(s)	362, 625, 1268
Sse9I	AATT	9 cut(s)	6, 155, 166, 392, 412, 484, 756, 1103, 1355
SseBI	AGGCCT	1 cut(s)	1079
SsiI	CCGC	2 cut(s)	477, 656
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	585, 1164, 1461
StuI	AGGCCT	1 cut(s)	1079
StyD4I	CCNGG	3 cut(s)	472, 1083, 1295
StyI	CCWWGG	2 cut(s)	424, 958
TaaI	ACNGT	4 cut(s)	497, 612, 1172, 1480
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	7 cut(s)	52, 125, 228, 247, 973, 1252, 1474
TasI	AATT	9 cut(s)	6, 155, 166, 392, 412, 484, 756, 1103, 1355
TatI	WGTACW	1 cut(s)	951
TfiI	GAWTC	4 cut(s)	244, 639, 1068, 1467
Tru1I	TTAA	6 cut(s)	177, 626, 702, 755, 1269, 1502
Tru9I	TTAA	6 cut(s)	177, 626, 702, 755, 1269, 1502
TscAI	CASTG	3 cut(s)	522, 1175, 1195
TseFI	GTSAC	2 cut(s)	709, 1124
TseI	GCWGC	3 cut(s)	192, 563, 685
Tsp45I	GTSAC	2 cut(s)	709, 1124
TspDTI	ATGAA	9 cut(s)	85, 133, 282, 361, 386, 440, 808, 1025, 1460
TspGWI	ACGGA	1 cut(s)	1197
TspRI	CASTG	3 cut(s)	522, 1175, 1195
Vha464I	CTTAAG	2 cut(s)	625, 1268
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	4 cut(s)	392, 484, 1103, 1355
XbaI	TCTAGA	1 cut(s)	1460
XceI	RCATGY	1 cut(s)	896
XcmI	CCANNNNNNNNNTGG	2 cut(s)	323, 1527
XmiI	GTMKAC	1 cut(s)	923
XmnI	GAANNNNTTC	1 cut(s)	1480
XspI	CTAG	3 cut(s)	585, 1164, 1461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.