AT3G46570

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016534
Physical Location & Seq
Reverse (-)
17145797 .. 17146867
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46570.1

Sequence Viewer

Length: 1071 bp
ATGTTGGGATCTAGAGTTGTTCATCAACTTTACTTCCTAATTCTCACTCTCATCCTTCCCTTCTCCGCTGCATATCAAGTCGGCGTAAACTACGGCACCGTGGCCAACAACCTCCCACCGCCTCACCAAGTCGTCAACTTCATCAAAACAAAAACAATAATCAACCACGTCAAAATCTTCGACACAAACCACGACATCCTCGCCGCATTTTCCGGCATTACAGGAATCTCCCTCACCGTCACCGTCCCAAACTCCGATATCATTTCTCTTTCCAAGCTTTCCAACGCACGTTCATGGCTCTCCGACAACCTCCTCCCCTTCCTCCTAACAACTTCAATCCGTTACATTGCTGTCGGAAACGAAGTCGTCGCCACATCCGACAAAACCCTCATCACTCATCTCCTTCCCGCTATGGAGACGCTTACGTTAGCATTACACCTTGCTAACGTCAGTAGGATCTTAGTCTCGACGCCTCACTCGCTCGGTATCCTCTCAGGCTCCTCCGAGCCACCTAGCTCCGGAAAGTTCCGTAAAGGGTACGACAAAGCCATCTTCTCTCCAATCCTAGACTTCCACAACCGCACCAAGTCTCCTTTTATGGTTAACCCGTATCCATATTTCGGTTTCGGACCTGAAACGTTAAACTACGCACTCTTTAACACAAACGACGTTGTATATGTTGACCCGGTTACGAAGTTGAACTACACCAACATGTTCGACGCTCAGCTTGATGCTGTTTACTCCGCAATGAAACGATTTGGGTACGGTGACGTGGACATTGTTGTGGCTGAGACCGGTTGGCCTTCAGCTGGTGAACCGAACCAAACCGGCGTCGGTTTAGATTATGCCGCAGCTTACAATGGGAACCTTATAAAGCATGTGAATTCTGGTAAGGGCACTCCATTGATGCCAAACCGGGTTTTCGAAACTTATGTTTTTTCTCTCTTCAACGAGAATCTCAAATCTTCGGTTTCAGAGCAAAACTTCGGTTTGTTTAAACCGGACTTCACCCCGGTTTACGATGTCGGTATCATGAAAACAAATAAGGTATATACGCTTCAATTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

356

Amino Acids

39.19

Weight (kDa)

7.13

Isoelectric Point (pI)

23.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 27 - 342 8.5e-78 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46570
fragaria_vesca FvH4_3g36150
malus_domestica MD11G1107600.v1.1
prunus_persica Prupe.6G076900_v2.0.a1
pyrus_communis pycom11g08910
rosa_chinensis RchiOBHm_Chr5g0064591 RchiOBHm_Chr5g0064901
rosa_laevigata RLG00000035739
rosa_roxburghii Rroxscaffold_1G00016410
rosa_rugosa Rorug05G0366600
rosa_samantha Rh5AG424700 Rh5BG439700 Rh5DG453000
rosa_wichuraiana Rw5G039930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 7 cut(s) 66, 119, 204, 408, 580, 744, 849
AclI AACGTT 1 cut(s) 638
AclWI GGATC 2 cut(s) 16, 464
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 1 cut(s) 789
AcyI GRCGYC 2 cut(s) 470, 831
AfaI GTAC 2 cut(s) 539, 764
AfiI CCNNNNNNNGG 3 cut(s) 518, 620, 809
AflIII ACRYGT 1 cut(s) 711
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 4 cut(s) 336, 700, 949, 1061
AjiI CACGTC 2 cut(s) 169, 772
AluBI AGCT 5 cut(s) 277, 516, 727, 809, 854
AluI AGCT 5 cut(s) 277, 516, 727, 809, 854
Alw26I GTCTC 4 cut(s) 410, 469, 594, 785
AlwI GGATC 2 cut(s) 16, 464
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 2 cut(s) 102, 800
ApeKI GCWGC 2 cut(s) 68, 851
ApoI RAATTY 1 cut(s) 883
AsiGI ACCGGT 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 3 cut(s) 686, 917, 1013
AsuHPI GGTGA 6 cut(s) 116, 226, 232, 779, 824, 1000
AsuII TTCGAA 1 cut(s) 924
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 899
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 95
BarI GAAGNNNNNNTAC 3 cut(s) 686, 718, 1041
BbvI GCAGC 2 cut(s) 55, 863
BccI CCATC 1 cut(s) 557
BceAI ACGGC 1 cut(s) 109
BciVI GTATCC 2 cut(s) 497, 621
BcnI CCSGG 3 cut(s) 686, 917, 1013
BcoDI GTCTC 4 cut(s) 410, 469, 594, 785
BfaI CTAG 3 cut(s) 12, 513, 566
BfuI GTATCC 2 cut(s) 497, 621
BisI GCNGC 4 cut(s) 69, 204, 849, 852
BlpI GCTNAGC 1 cut(s) 723
BlsI GCNGC 4 cut(s) 70, 205, 850, 853
Bme1390I CCNGG 3 cut(s) 686, 917, 1013
Bme18I GGWCC 1 cut(s) 629
BmgBI CACGTC 2 cut(s) 169, 772
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 3 cut(s) 97, 499, 866
BmrFI CCNGG 3 cut(s) 686, 917, 1013
BmsI GCATC 2 cut(s) 721, 897
Bpu1102I GCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 1 cut(s) 924
BpuMI CCSGG 3 cut(s) 686, 917, 1013
BsaHI GRCGYC 2 cut(s) 470, 831
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 2 cut(s) 99, 1011
BsaWI WCCGGW 3 cut(s) 518, 794, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 620, 809
Bse118I RCCGGY 2 cut(s) 794, 827
Bse3DI GCAATG 2 cut(s) 345, 753
BseAI TCCGGA 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 99, 1011
BseGI GGATG 3 cut(s) 51, 195, 374
BseLI CCNNNNNNNGG 3 cut(s) 518, 620, 809
BseMI GCAATG 2 cut(s) 345, 753
BseMII CTCAG 3 cut(s) 507, 737, 780
BseRI GAGGAG 2 cut(s) 302, 490
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 2 cut(s) 55, 863
BshFI GGCC 2 cut(s) 104, 802
BshNI GGYRCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 794
BsiSI CCGG 8 cut(s) 213, 519, 686, 795, 828, 916, 1001, 1013
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 518, 620, 809
BsmAI GTCTC 4 cut(s) 410, 469, 594, 785
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 2 cut(s) 104, 802
Bso31I GGTCTC 1 cut(s) 785
Bsp119I TTCGAA 1 cut(s) 924
Bsp1286I GDGCHC 1 cut(s) 899
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 2 cut(s) 8, 456
Bsp1720I GCTNAGC 1 cut(s) 723
BspACI CCGC 7 cut(s) 66, 119, 204, 408, 580, 744, 849
BspANI GGCC 2 cut(s) 104, 802
BspCNI CTCAG 3 cut(s) 506, 736, 781
BspEI TCCGGA 1 cut(s) 518
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 3 cut(s) 97, 499, 866
BspPI GGATC 2 cut(s) 16, 464
BspT104I TTCGAA 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 345, 753
BsrFI RCCGGY 2 cut(s) 794, 827
BssAI RCCGGY 2 cut(s) 794, 827
BssECI CCNNGG 2 cut(s) 99, 1011
BssMI GATC 2 cut(s) 8, 456
BssNI GRCGYC 2 cut(s) 470, 831
Bst4CI ACNGT 4 cut(s) 100, 238, 244, 767
Bst6I CTCTTC 1 cut(s) 950
BstACI GRCGYC 2 cut(s) 470, 831
BstBI TTCGAA 1 cut(s) 924
BstDEI CTNAG 4 cut(s) 460, 493, 723, 789
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 51, 195, 374
BstKTI GATC 2 cut(s) 11, 459
BstMAI GTCTC 4 cut(s) 410, 469, 594, 785
BstMBI GATC 2 cut(s) 8, 456
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstNSI RCATGY 2 cut(s) 715, 881
BstSCI CCNGG 3 cut(s) 684, 915, 1011
BstSLI GKGCMC 1 cut(s) 899
BstV1I GCAGC 2 cut(s) 55, 863
BstX2I RGATCY 2 cut(s) 8, 456
BstYI RGATCY 2 cut(s) 8, 456
BsuI GTATCC 2 cut(s) 497, 621
BsuRI GGCC 2 cut(s) 104, 802
BtgI CCRYGG 1 cut(s) 99
BtrI CACGTC 2 cut(s) 169, 772
BtsCI GGATG 3 cut(s) 51, 195, 374
CciI TCATGA 1 cut(s) 1032
Cfr10I RCCGGY 2 cut(s) 794, 827
Cfr13I GGNCC 1 cut(s) 629
CseI GACGC 4 cut(s) 427, 478, 728, 820
Csp6I GTAC 2 cut(s) 538, 763
CspAI ACCGGT 1 cut(s) 794
CviAII CATG 4 cut(s) 294, 712, 878, 1033
CviQI GTAC 2 cut(s) 538, 763
DdeI CTNAG 4 cut(s) 460, 493, 723, 789
DpnI GATC 2 cut(s) 10, 458
DpnII GATC 2 cut(s) 8, 456
DraI TTTAAA 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
Eco31I GGTCTC 1 cut(s) 785
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 789
EcoRI GAATTC 1 cut(s) 883
EcoRV GATATC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 4 cut(s) 297, 715, 881, 1036
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 293, 711, 877, 1032
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 69, 204, 849, 852
FokI GGATG 3 cut(s) 38, 182, 361
Fsp4HI GCNGC 4 cut(s) 69, 204, 849, 852
FspBI CTAG 3 cut(s) 12, 513, 566
GluI GCNGC 4 cut(s) 69, 204, 849, 852
HaeIII GGCC 2 cut(s) 104, 802
HapII CCGG 8 cut(s) 213, 519, 686, 795, 828, 916, 1001, 1013
HgaI GACGC 4 cut(s) 427, 478, 728, 820
Hin1I GRCGYC 2 cut(s) 470, 831
Hin1II CATG 4 cut(s) 297, 715, 881, 1036
HincII GTYRAC 3 cut(s) 136, 604, 682
HindII GTYRAC 3 cut(s) 136, 604, 682
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 225, 955
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 8 cut(s) 213, 519, 686, 795, 828, 916, 1001, 1013
HphI GGTGA 6 cut(s) 116, 226, 232, 779, 824, 1000
Hpy166II GTNNAC 8 cut(s) 88, 136, 604, 682, 739, 775, 815, 1018
Hpy188I TCNGA 7 cut(s) 256, 304, 356, 379, 505, 629, 976
Hpy188III TCNNGA 4 cut(s) 12, 466, 519, 1033
Hpy8I GTNNAC 8 cut(s) 88, 136, 604, 682, 739, 775, 815, 1018
Hpy99I CGWCG 5 cut(s) 371, 472, 671, 722, 836
HpyAV CCTTC 5 cut(s) 65, 70, 328, 413, 813
HpyCH4III ACNGT 4 cut(s) 100, 238, 244, 767
HpyCH4IV ACGT 7 cut(s) 168, 289, 425, 447, 638, 669, 771
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpyF3I CTNAG 4 cut(s) 460, 493, 723, 789
HpySE526I ACGT 7 cut(s) 168, 289, 425, 447, 638, 669, 771
Hsp92I GRCGYC 2 cut(s) 470, 831
Hsp92II CATG 4 cut(s) 297, 715, 881, 1036
Kpn2I TCCGGA 1 cut(s) 518
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 2 cut(s) 8, 456
LmnI GCTCC 2 cut(s) 503, 521
Lsp1109I GCAGC 2 cut(s) 55, 863
LweI GCATC 2 cut(s) 721, 897
MaeI CTAG 3 cut(s) 12, 513, 566
MaeII ACGT 7 cut(s) 168, 289, 425, 447, 638, 669, 771
MaeIII GTNAC 4 cut(s) 238, 341, 688, 767
MalI GATC 2 cut(s) 10, 458
MboI GATC 2 cut(s) 8, 456
MboII GAAGA 4 cut(s) 169, 544, 937, 957
MflI RGATCY 2 cut(s) 8, 456
MhlI GDGCHC 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 39, 883, 1061
MluNI TGGCCA 1 cut(s) 104
MmeI TCCRAC 4 cut(s) 306, 327, 334, 402
Mox20I TGGCCA 1 cut(s) 104
MroI TCCGGA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 104
MseI TTAA 4 cut(s) 603, 641, 657, 996
MslI CAYNNNNRTG 3 cut(s) 292, 710, 782
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 68, 809
MspI CCGG 8 cut(s) 213, 519, 686, 795, 828, 916, 1001, 1013
MspR9I CCNGG 3 cut(s) 686, 917, 1013
MssI GTTTAAAC 1 cut(s) 997
MwoI GCNNNNNNNGC 1 cut(s) 478
NciI CCSGG 3 cut(s) 686, 917, 1013
NdeII GATC 2 cut(s) 8, 456
NlaIII CATG 4 cut(s) 297, 715, 881, 1036
NlaIV GGNNCC 3 cut(s) 97, 499, 866
NmuCI GTSAC 2 cut(s) 238, 767
NspI RCATGY 2 cut(s) 715, 881
NspV TTCGAA 1 cut(s) 924
PagI TCATGA 1 cut(s) 1032
PciI ACATGT 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 2 cut(s) 225, 955
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 4 cut(s) 70, 205, 850, 853
PmeI GTTTAAAC 1 cut(s) 997
PscI ACATGT 1 cut(s) 711
PsiI TTATAA 1 cut(s) 872
Psp1406I AACGTT 1 cut(s) 638
PspN4I GGNNCC 3 cut(s) 97, 499, 866
PspPI GGNCC 1 cut(s) 629
PsuI RGATCY 2 cut(s) 8, 456
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 2 cut(s) 539, 764
RsaNI GTAC 2 cut(s) 538, 763
RseI CAYNNNNRTG 3 cut(s) 292, 710, 782
SaqAI TTAA 4 cut(s) 603, 641, 657, 996
SatI GCNGC 4 cut(s) 69, 204, 849, 852
Sau3AI GATC 2 cut(s) 8, 456
Sau96I GGNCC 1 cut(s) 629
ScrFI CCNGG 3 cut(s) 686, 917, 1013
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 2 cut(s) 721, 897
SfuI TTCGAA 1 cut(s) 924
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 3 cut(s) 292, 710, 782
Sse9I AATT 3 cut(s) 39, 883, 1061
SsiI CCGC 7 cut(s) 66, 119, 204, 408, 580, 744, 849
SspMI CTAG 3 cut(s) 12, 513, 566
StyD4I CCNGG 3 cut(s) 684, 915, 1011
TaaI ACNGT 4 cut(s) 100, 238, 244, 767
TaiI ACGT 7 cut(s) 171, 292, 428, 450, 641, 672, 774
TaqI TCGA 4 cut(s) 180, 467, 717, 924
TasI AATT 3 cut(s) 39, 883, 1061
TauI GCSGC 2 cut(s) 206, 851
TfiI GAWTC 2 cut(s) 225, 955
Tru1I TTAA 4 cut(s) 603, 641, 657, 996
Tru9I TTAA 4 cut(s) 603, 641, 657, 996
TseFI GTSAC 2 cut(s) 238, 767
TseI GCWGC 2 cut(s) 68, 851
Tsp45I GTSAC 2 cut(s) 238, 767
TspDTI ATGAA 5 cut(s) 11, 130, 282, 764, 1049
TspGWI ACGGA 2 cut(s) 329, 518
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 1 cut(s) 883
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 2 cut(s) 715, 881
XspI CTAG 3 cut(s) 12, 513, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.