Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010655

Physical Location & Seq

Genomic Coordinates Reverse (-)

17241702 .. 17244281

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGTTTACTTGATTACCGAAACCCTAAAGCTGGGACCAAACAAGCTATGCTCAACGATTCTGAGATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTGAGCTCGCTGCCCCTGTTAAGATCTGCGGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTTGACCGCGGAAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAAATACCCTGAAAACTTTTTTCTCTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATTTACGGATTCTATGACGAATGTAAACGAAGATTCAACGTGAAGCTCTGGAAAGTGTTTACCGATACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGATGAAAAGATACTTTGTATGCATGGTGGACTATCTCCTGAGTTGATCAATGTGGAACAAATTAAGAACATAGAGCGTCCAACTGATGTTCCAGACGCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGATGTCAAAGGCTGGGGGATGAATGATCGTGGTGTCTCCTACACTTTTGGTGCTGACAAAGTTGCTGAGTTTTTAATAAAGAATGATATGGATTTAGTCTGTCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGAATTTGACAATGCGGGTGCATTGATGAGTGTCGACGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTGTGGATCGGAGGTCGCGGTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

312

Amino Acids

35.52

Weight (kDa)

5.08

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 61	1.4e-18	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	64 - 257	4.9e-49	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29400 AT3G46820 AT5G59160 AT5G59160 AT5G59160
fragaria_vesca	FvH4_6g02160 FvH4_6g02160
malus_domestica	MD04G1229100.v1.1 MD12G1246200.v1.1
prunus_persica	Prupe.6G349000_v2.0.a1
pyrus_communis	pycom04g20300 pycom12g22570
rosa_chinensis	RchiOBHm_Chr3g0449941
rosa_laevigata	RLG00000025773
rosa_multiflora	Rmu_sc0002646.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427730
rosa_rugosa	Rorug02G0624100
rosa_samantha	Rh3AG023200 Rh3DG023700
rosa_wichuraiana	Rw3G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	2 cut(s)	306, 928
AciI	CCGC	5 cut(s)	204, 304, 306, 854, 928
AclWI	GGATC	3 cut(s)	115, 635, 924
AcsI	RAATTY	3 cut(s)	414, 842, 900
AfiI	CCNNNNNNNGG	2 cut(s)	86, 611
AflII	CTTAAG	2 cut(s)	379, 905
AgsI	TTSAA	2 cut(s)	161, 451
AhdI	GACNNNNNGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	6 cut(s)	86, 101, 130, 181, 460, 805
AluI	AGCT	6 cut(s)	86, 101, 130, 181, 460, 805
Alw21I	GWGCWC	2 cut(s)	183, 893
Alw26I	GTCTC	4 cut(s)	145, 317, 497, 691
AlwI	GGATC	3 cut(s)	115, 635, 924
AlwNI	CAGNNNCTG	1 cut(s)	611
ApeKI	GCWGC	3 cut(s)	185, 269, 503
ApoI	RAATTY	3 cut(s)	414, 842, 900
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	28, 90
AsuHPI	GGTGA	2 cut(s)	218, 851
AvaII	GGWCC	2 cut(s)	28, 90
BaeGI	GKGCMC	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	164, 326
Bbv12I	GWGCWC	2 cut(s)	183, 893
BbvI	GCAGC	3 cut(s)	172, 281, 490
BccI	CCATC	1 cut(s)	770
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	558
BcoDI	GTCTC	4 cut(s)	145, 317, 497, 691
BfaI	CTAG	2 cut(s)	144, 645
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	2 cut(s)	379, 905
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	3 cut(s)	186, 270, 504
BlsI	GCNGC	3 cut(s)	187, 271, 505
Bme1390I	CCNGG	1 cut(s)	764
Bme18I	GGWCC	2 cut(s)	28, 90
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	28, 90
BmiI	GGNNCC	2 cut(s)	30, 91
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	164, 326
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 611
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	675, 781
BseLI	CCNNNNNNNGG	2 cut(s)	86, 611
BseMII	CTCAG	4 cut(s)	108, 240, 543, 708
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	172, 281, 490
BseYI	CCCAGC	2 cut(s)	86, 663
Bsh1236I	CGCG	2 cut(s)	306, 928
BsiHKAI	GWGCWC	2 cut(s)	183, 893
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	86, 611
BsmAI	GTCTC	4 cut(s)	145, 317, 497, 691
BsmFI	GGGAC	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	183, 760, 893
Bsp143I	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
BspACI	CCGC	5 cut(s)	204, 304, 306, 854, 928
BspCNI	CTCAG	4 cut(s)	109, 239, 544, 709
BspFNI	CGCG	2 cut(s)	306, 928
BspLI	GGNNCC	2 cut(s)	30, 91
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	3 cut(s)	115, 635, 924
BspTI	CTTAAG	2 cut(s)	379, 905
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	491, 836
BstAFI	CTTAAG	2 cut(s)	379, 905
BstC8I	GCNNGC	2 cut(s)	183, 342
BstDEI	CTNAG	5 cut(s)	117, 226, 286, 552, 717
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	675, 781
BstFNI	CGCG	2 cut(s)	306, 928
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	123, 201, 354, 561, 643, 679, 919
BstMAI	GTCTC	4 cut(s)	145, 317, 497, 691
BstMBI	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	764
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	760
BstUI	CGCG	2 cut(s)	306, 928
BstV1I	GCAGC	3 cut(s)	172, 281, 490
BstV2I	GAAGAC	2 cut(s)	164, 326
BstX2I	RGATCY	2 cut(s)	120, 198
BstYI	RGATCY	2 cut(s)	120, 198
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	675, 781
Cac8I	GCNNGC	2 cut(s)	183, 342
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	28, 90
Cfr42I	CCGCGG	1 cut(s)	307
CseI	GACGC	2 cut(s)	578, 617
CsiI	ACCWGGT	1 cut(s)	762
CviAII	CATG	4 cut(s)	25, 215, 392, 536
DdeI	CTNAG	5 cut(s)	117, 226, 286, 552, 717
DpnI	GATC	7 cut(s)	122, 200, 353, 560, 642, 678, 918
DpnII	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
DriI	GACNNNNNGTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	28, 90
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	4 cut(s)	28, 218, 395, 539
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	24, 214, 391, 535
FauI	CCCGC	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	3 cut(s)	186, 270, 504
FokI	GGATG	2 cut(s)	682, 788
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	186, 270, 504
FspBI	CTAG	2 cut(s)	144, 645
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	186, 270, 504
GsaI	CCCAGC	2 cut(s)	90, 667
HgaI	GACGC	2 cut(s)	578, 617
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	28, 218, 395, 539
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	301, 874
HindII	GTYRAC	2 cut(s)	301, 874
HinfI	GANTC	3 cut(s)	113, 423, 447
HphI	GGTGA	2 cut(s)	218, 851
Hpy166II	GTNNAC	6 cut(s)	62, 301, 440, 474, 542, 874
Hpy188I	TCNGA	5 cut(s)	118, 125, 229, 640, 921
Hpy188III	TCNNGA	6 cut(s)	41, 144, 176, 463, 551, 605
Hpy8I	GTNNAC	6 cut(s)	62, 301, 440, 474, 542, 874
Hpy99I	CGWCG	3 cut(s)	47, 60, 878
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	2 cut(s)	491, 836
HpyCH4IV	ACGT	2 cut(s)	297, 453
HpyCH4V	TGCA	4 cut(s)	269, 401, 535, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	5 cut(s)	117, 226, 286, 552, 717
HpySE526I	ACGT	2 cut(s)	297, 453
Hsp92II	CATG	4 cut(s)	28, 218, 395, 539
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	558
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
LmnI	GCTCC	1 cut(s)	829
Lsp1109I	GCAGC	3 cut(s)	172, 281, 490
LweI	GCATC	1 cut(s)	410
MabI	ACCWGGT	1 cut(s)	762
MaeI	CTAG	2 cut(s)	144, 645
MaeII	ACGT	2 cut(s)	297, 453
MaeIII	GTNAC	2 cut(s)	623, 808
MalI	GATC	7 cut(s)	122, 200, 353, 560, 642, 678, 918
MboI	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
MboII	GAAGA	4 cut(s)	149, 164, 326, 456
MflI	RGATCY	2 cut(s)	120, 198
MhlI	GDGCHC	3 cut(s)	183, 760, 893
MluCI	AATT	4 cut(s)	414, 573, 842, 900
MmeI	TCCRAC	2 cut(s)	148, 617
MnlI	CCTC	6 cut(s)	231, 248, 273, 377, 766, 915
Mph1103I	ATGCAT	1 cut(s)	537
MseI	TTAA	8 cut(s)	195, 380, 408, 486, 576, 725, 884, 906
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	306
MspCI	CTTAAG	2 cut(s)	379, 905
MspR9I	CCNGG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	2 cut(s)	306, 928
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
NlaIII	CATG	4 cut(s)	28, 218, 395, 539
NlaIV	GGNNCC	2 cut(s)	30, 91
NmuCI	GTSAC	2 cut(s)	623, 808
NsiI	ATGCAT	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	113, 423, 447
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	187, 271, 505
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	2 cut(s)	86, 663
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	2 cut(s)	30, 91
PspPI	GGNCC	2 cut(s)	28, 90
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	120, 198
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	872
SaqAI	TTAA	8 cut(s)	195, 380, 408, 486, 576, 725, 884, 906
SatI	GCNGC	3 cut(s)	186, 270, 504
Sau3AI	GATC	7 cut(s)	120, 198, 351, 558, 640, 676, 916
Sau96I	GGNCC	2 cut(s)	28, 90
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	3 cut(s)	183, 760, 893
SexAI	ACCWGGT	1 cut(s)	762
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	28, 90
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	176, 379, 905
SmoI	CTYRAG	3 cut(s)	176, 379, 905
Sse9I	AATT	4 cut(s)	414, 573, 842, 900
SsiI	CCGC	5 cut(s)	204, 304, 306, 854, 928
SspMI	CTAG	2 cut(s)	144, 645
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	762
TaaI	ACNGT	2 cut(s)	491, 836
TaiI	ACGT	2 cut(s)	300, 456
TaqI	TCGA	3 cut(s)	42, 246, 873
TasI	AATT	4 cut(s)	414, 573, 842, 900
TfiI	GAWTC	3 cut(s)	113, 423, 447
Tru1I	TTAA	8 cut(s)	195, 380, 408, 486, 576, 725, 884, 906
Tru9I	TTAA	8 cut(s)	195, 380, 408, 486, 576, 725, 884, 906
TseFI	GTSAC	2 cut(s)	623, 808
TseI	GCWGC	3 cut(s)	185, 269, 503
Tsp45I	GTSAC	2 cut(s)	623, 808
TspDTI	ATGAA	3 cut(s)	203, 531, 686
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	611
Vha464I	CTTAAG	2 cut(s)	379, 905
VpaK11BI	GGWCC	2 cut(s)	28, 90
XapI	RAATTY	3 cut(s)	414, 842, 900
XbaI	TCTAGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	2 cut(s)	144, 645
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.