Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010655

Physical Location & Seq

Genomic Coordinates Reverse (-)

1274180 .. 1279503

Gene Structure 5324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGACCCATCGGTTCTTGACGACATAATCAGCCGTCTTCTTGAAGTCCGAGGCCGACCCGGAAAGCAGGTCCAGCTATCCGAGTCCGAGATCCGGCAACTCTGCTCTGCCTCTAAAGACATCTTTTTGCAACAACCCAACTTGTTAGAGCTTGAAGCACCCATCAAGATTTGTGGTGACATACATGGTCAATACTCGGATCTCTTAAGGCTTTTTGAGTATGGGGGATTACCTCCTAATGCCAATTACTTGTTCTTGGGAGATTATGTGGATCGAGGAAAGCAAAGTTTAGAAACAATATGTCTTCTCCTTGCATATAAAATAAAGTATCCTGAGAACTTTTTTCTCTTGAGAGGAAACCATGAGTGTGCTTCTATAAACCGTATATATGGATTTTATGACGAGTGTAAGAGAAGATTCAATGTGAGGCTATGGAAGACATTTACGGAGTGCTTTAACTGCCTACCAGTTGCAGCCCTGATTGATGAAAAGATTCTCTGTATGCATGGGGGTCTTTCTCCTGAGCTGAATAATTTAGATCAAATTAGATCTCTACTCCGGCCAACTGATGTACCAGACACAGGTTTACTCTGTGATCTTCTCTGGTCTGATCCCAGTAAAGATGTGCAAGGTTGGGGAGGGAATGACCGGGGAGTGTCCTACACATTTGGTCCTGATACAGTTACTGAGTTTCTTGAGAAGCATGATTTGGATCTCGTTTGTCGTGCTCACCAGGTTGTGGAGGATGGGTATGAGTTATTTGCCAACCGCCAACTTGTGACGATATTTTCAGCACCTAATTATTGTGGGGAGTTCGATAATGCTGGTGCCATGATGAGCGTGGACGACACATTGATGTGCTCTTTCCAAATATTAAAACCGGCTGACAAAAGGGCGAAGTTTAACTTGGGCAGCCTAACTACAGCTAAGCCTGGAAATTCTTCAACTGGTGTTTTTGGGAGCACAACTACAGCTAAGCCTAGCAATACTCCAGCAGGAGTCAAGTCCTTGATGCAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

5.27

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	7.9e-23	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 247	2.8e-52	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29400 AT3G46820 AT5G59160 AT5G59160 AT5G59160
fragaria_vesca	FvH4_6g02160 FvH4_6g02160
malus_domestica	MD04G1229100.v1.1 MD12G1246200.v1.1
prunus_persica	Prupe.6G349000_v2.0.a1
pyrus_communis	pycom04g20300 pycom12g22570
rosa_chinensis	RchiOBHm_Chr3g0449941
rosa_laevigata	RLG00000025773
rosa_multiflora	Rmu_sc0002646.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427730
rosa_rugosa	Rorug02G0624100
rosa_samantha	Rh3AG023200 Rh3DG023700
rosa_wichuraiana	Rw3G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	1 cut(s)	769
AclWI	GGATC	5 cut(s)	85, 207, 279, 605, 720
AcoI	YGGCCR	1 cut(s)	560
AcsI	RAATTY	1 cut(s)	937
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	93, 581, 739
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	44, 155, 421, 945
AjnI	CCWGG	2 cut(s)	732, 931
AjuI	GAANNNNNNNTTGG	6 cut(s)	236, 268, 692, 724, 890, 922
AluBI	AGCT	5 cut(s)	76, 151, 526, 926, 974
AluI	AGCT	5 cut(s)	76, 151, 526, 926, 974
Alw21I	GWGCWC	3 cut(s)	730, 863, 965
AlwI	GGATC	5 cut(s)	85, 207, 279, 605, 720
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	52, 560
ApeKI	GCWGC	2 cut(s)	473, 912
ApoI	RAATTY	1 cut(s)	937
Asp700I	GAANNNNTTC	2 cut(s)	492, 940
AspS9I	GGNCC	3 cut(s)	4, 70, 671
AsuC2I	CCSGG	2 cut(s)	60, 650
AsuHPI	GGTGA	2 cut(s)	188, 722
AvaII	GGWCC	3 cut(s)	4, 70, 671
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BanI	GGYRCC	1 cut(s)	827
BbsI	GAAGAC	3 cut(s)	29, 296, 443
Bbv12I	GWGCWC	3 cut(s)	730, 863, 965
BbvI	GCAGC	2 cut(s)	485, 924
BccI	CCATC	3 cut(s)	16, 170, 740
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	2 cut(s)	734, 933
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	60, 650
BfaI	CTAG	1 cut(s)	981
BfmI	CTRYAG	2 cut(s)	921, 969
BfrI	CTTAAG	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	2 cut(s)	474, 913
BlpI	GCTNAGC	2 cut(s)	927, 975
BlsI	GCNGC	2 cut(s)	475, 914
Bme1390I	CCNGG	4 cut(s)	60, 650, 734, 933
Bme18I	GGWCC	3 cut(s)	4, 70, 671
BmgT120I	GGNCC	3 cut(s)	4, 70, 671
BmiI	GGNNCC	2 cut(s)	6, 829
BmrFI	CCNGG	4 cut(s)	60, 650, 734, 933
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	1002
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	3 cut(s)	29, 296, 443
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu1102I	GCTNAGC	2 cut(s)	927, 975
BpuEI	CTTGAG	2 cut(s)	370, 716
BpuMI	CCSGG	2 cut(s)	60, 650
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	49, 649
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 734, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 581, 739
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	3 cut(s)	467, 615, 952
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	734, 933
BseDI	CCNNGG	2 cut(s)	49, 649
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	3 cut(s)	93, 581, 739
BseMII	CTCAG	3 cut(s)	324, 513, 678
BseNI	ACTGG	3 cut(s)	467, 615, 952
BseXI	GCAGC	2 cut(s)	485, 924
BshFI	GGCC	2 cut(s)	54, 562
BshNI	GGYRCC	1 cut(s)	827
BsiHKAI	GWGCWC	3 cut(s)	730, 863, 965
BsiSI	CCGG	5 cut(s)	60, 94, 559, 649, 881
BslI	CCNNNNNNNGG	3 cut(s)	93, 581, 739
BsnI	GGCC	2 cut(s)	54, 562
Bsp1286I	GDGCHC	3 cut(s)	730, 863, 965
Bsp143I	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
Bsp1720I	GCTNAGC	2 cut(s)	927, 975
BspACI	CCGC	1 cut(s)	769
BspANI	GGCC	2 cut(s)	54, 562
BspCNI	CTCAG	3 cut(s)	325, 514, 679
BspLI	GGNNCC	2 cut(s)	6, 829
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	5 cut(s)	85, 207, 279, 605, 720
BspT107I	GGYRCC	1 cut(s)	827
BspTI	CTTAAG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	3 cut(s)	467, 615, 952
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	49, 649
BssMI	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
Bst2UI	CCWGG	2 cut(s)	734, 933
Bst4CI	ACNGT	2 cut(s)	383, 682
BstAFI	CTTAAG	1 cut(s)	205
BstDEI	CTNAG	5 cut(s)	333, 522, 687, 927, 975
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	8 cut(s)	93, 202, 274, 541, 551, 598, 613, 715
BstMBI	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 459
BstNI	CCWGG	2 cut(s)	734, 933
BstSCI	CCNGG	4 cut(s)	58, 648, 732, 931
BstSFI	CTRYAG	2 cut(s)	921, 969
BstV1I	GCAGC	2 cut(s)	485, 924
BstV2I	GAAGAC	3 cut(s)	29, 296, 443
BstX2I	RGATCY	4 cut(s)	90, 199, 548, 712
BstYI	RGATCY	4 cut(s)	90, 199, 548, 712
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	54, 562
BtsCI	GGATG	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	3 cut(s)	4, 70, 671
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	572
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	5 cut(s)	185, 362, 506, 704, 832
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	5 cut(s)	333, 522, 687, 927, 975
DpnI	GATC	8 cut(s)	92, 201, 273, 540, 550, 597, 612, 714
DpnII	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
EaeI	YGGCCR	1 cut(s)	560
Eco47I	GGWCC	3 cut(s)	4, 70, 671
EcoRII	CCWGG	2 cut(s)	732, 931
EcoT22I	ATGCAT	1 cut(s)	507
FaeI	CATG	5 cut(s)	188, 365, 509, 707, 835
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FatI	CATG	5 cut(s)	184, 361, 505, 703, 831
Fnu4HI	GCNGC	2 cut(s)	474, 913
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	2 cut(s)	474, 913
FspBI	CTAG	1 cut(s)	981
GluI	GCNGC	2 cut(s)	474, 913
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	2 cut(s)	54, 562
HapII	CCGG	5 cut(s)	60, 94, 559, 649, 881
Hin1II	CATG	5 cut(s)	188, 365, 509, 707, 835
HinfI	GANTC	4 cut(s)	83, 417, 493, 999
HpaII	CCGG	5 cut(s)	60, 94, 559, 649, 881
HphI	GGTGA	2 cut(s)	188, 722
Hpy166II	GTNNAC	2 cut(s)	587, 844
Hpy188I	TCNGA	5 cut(s)	50, 82, 88, 199, 610
Hpy188III	TCNNGA	8 cut(s)	17, 41, 166, 332, 349, 521, 674, 695
Hpy8I	GTNNAC	2 cut(s)	587, 844
HpyCH4III	ACNGT	2 cut(s)	383, 682
HpyCH4V	TGCA	6 cut(s)	130, 314, 473, 505, 628, 1015
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 459
HpyF3I	CTNAG	5 cut(s)	333, 522, 687, 927, 975
Hsp92II	CATG	5 cut(s)	188, 365, 509, 707, 835
Kzo9I	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
LmnI	GCTCC	1 cut(s)	960
Lsp1109I	GCAGC	2 cut(s)	485, 924
LweI	GCATC	1 cut(s)	1002
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	1 cut(s)	981
MaeIII	GTNAC	3 cut(s)	176, 682, 778
MalI	GATC	8 cut(s)	92, 201, 273, 540, 550, 597, 612, 714
MboI	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
MboII	GAAGA	6 cut(s)	29, 296, 426, 448, 590, 933
MflI	RGATCY	4 cut(s)	90, 199, 548, 712
MhlI	GDGCHC	3 cut(s)	730, 863, 965
MluCI	AATT	5 cut(s)	244, 532, 543, 799, 937
MlyI	GAGTC	2 cut(s)	92, 1008
MnlI	CCTC	9 cut(s)	44, 121, 243, 269, 347, 420, 632, 736, 1011
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	2 cut(s)	492, 940
MseI	TTAA	4 cut(s)	206, 456, 875, 903
MslI	CAYNNNNRTG	3 cut(s)	366, 854, 856
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	5 cut(s)	60, 94, 559, 649, 881
MspR9I	CCNGG	4 cut(s)	60, 650, 734, 933
MvaI	CCWGG	2 cut(s)	734, 933
MwoI	GCNNNNNNNGC	2 cut(s)	73, 459
NciI	CCSGG	2 cut(s)	60, 650
NdeII	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
NlaIII	CATG	5 cut(s)	188, 365, 509, 707, 835
NlaIV	GGNNCC	2 cut(s)	6, 829
NmuCI	GTSAC	2 cut(s)	176, 778
NsiI	ATGCAT	1 cut(s)	507
PdmI	GAANNNNTTC	2 cut(s)	492, 940
PfeI	GAWTC	2 cut(s)	417, 493
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	2 cut(s)	475, 914
PleI	GAGTC	2 cut(s)	91, 1007
PpsI	GAGTC	2 cut(s)	91, 1007
Psp6I	CCWGG	2 cut(s)	732, 931
PspGI	CCWGG	2 cut(s)	732, 931
PspN4I	GGNNCC	2 cut(s)	6, 829
PspPI	GGNCC	3 cut(s)	4, 70, 671
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	4 cut(s)	90, 199, 548, 712
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	3 cut(s)	366, 854, 856
SaqAI	TTAA	4 cut(s)	206, 456, 875, 903
SatI	GCNGC	2 cut(s)	474, 913
Sau3AI	GATC	8 cut(s)	90, 199, 271, 538, 548, 595, 610, 712
Sau96I	GGNCC	3 cut(s)	4, 70, 671
SchI	GAGTC	2 cut(s)	92, 1008
ScrFI	CCNGG	4 cut(s)	60, 650, 734, 933
SduI	GDGCHC	3 cut(s)	730, 863, 965
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	1002
SfcI	CTRYAG	2 cut(s)	921, 969
SinI	GGWCC	3 cut(s)	4, 70, 671
SmiMI	CAYNNNNRTG	3 cut(s)	366, 854, 856
SmlI	CTYRAG	3 cut(s)	205, 349, 695
SmoI	CTYRAG	3 cut(s)	205, 349, 695
Sse9I	AATT	5 cut(s)	244, 532, 543, 799, 937
SsiI	CCGC	1 cut(s)	769
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	1 cut(s)	981
StyD4I	CCNGG	4 cut(s)	58, 648, 732, 931
TaaI	ACNGT	2 cut(s)	383, 682
TaqI	TCGA	2 cut(s)	274, 816
TasI	AATT	5 cut(s)	244, 532, 543, 799, 937
TfiI	GAWTC	2 cut(s)	417, 493
Tru1I	TTAA	4 cut(s)	206, 456, 875, 903
Tru9I	TTAA	4 cut(s)	206, 456, 875, 903
TseFI	GTSAC	2 cut(s)	176, 778
TseI	GCWGC	2 cut(s)	473, 912
Tsp45I	GTSAC	2 cut(s)	176, 778
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	4, 70, 671
XapI	RAATTY	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmnI	GAANNNNTTC	2 cut(s)	492, 940
XspI	CTAG	1 cut(s)	981
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.