pycom04g20300

serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0010655
Physical Location & Seq
Forward (+)
21833139 .. 21834765
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20300.2

Sequence Viewer

Length: 528 bp
ATGCATGGCGGTCTTTCTCCCGACCTGCATAATTTAGATCAAATCAGAAATTTACAGAGGCCAACAGATGTACCAGACACAGGTTTACTTTGTGACCTTCTCTGGTCTGATCCCAGTAAAGATGTTCAAGGTTGGGGAGGGAACGAGCGGGGAGTTTCGTTTACATTTGGTCCTGACACGGTGACGGAGTTTCTTCAGAAGCATGATTTGGATCTCATTTGTCGTGCTCACCAGGTTGTGGAGGATGGCTATGAGTTATTTGCCAACCGACAACTTGTGACGATATTTTCAGCACCTAATTATTGTGGGGAATTTGATAATGCTGGTGCCATGATGAGTGTGGATGAGACATTAATGTGCTCTTTTCAAATATTAAAACCTGCAGAGAAAAAGCCGAAATTTAACTTTGGGAGCATGACTGCAGCTAAACCTGGAAATACTTCATCTGGAGTTGGCGCTTTTGCGAGCATAGCAGCAGCTAAGCCTGGGAACACTGTTACAGGAATCAAGTCTTTGATGCACAGGTAA

Protein Analysis

176

Amino Acids

18.99

Weight (kDa)

5.45

Isoelectric Point (pI)

25.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29400 AT3G46820 AT5G59160 AT5G59160 AT5G59160
fragaria_vesca FvH4_6g02160 FvH4_6g02160
malus_domestica MD04G1229100.v1.1 MD12G1246200.v1.1
prunus_persica Prupe.6G349000_v2.0.a1
pyrus_communis pycom04g20300 pycom12g22570
rosa_chinensis RchiOBHm_Chr3g0449941
rosa_laevigata RLG00000025773
rosa_multiflora Rmu_sc0002646.1_g000002
rosa_roxburghii Rroxscaffold_6G00427730
rosa_rugosa Rorug02G0624100
rosa_samantha Rh3AG023200 Rh3DG023700
rosa_wichuraiana Rw3G001860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 33, 388
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 2 cut(s) 9, 148
AclWI GGATC 2 cut(s) 104, 219
AcsI RAATTY 3 cut(s) 49, 311, 398
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 80, 238
AgsI TTSAA 2 cut(s) 128, 368
AjnI CCWGG 3 cut(s) 231, 430, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 425, 479
AluI AGCT 2 cut(s) 425, 479
Alw21I GWGCWC 2 cut(s) 229, 362
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 104, 219
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 422, 473, 476
ApoI RAATTY 3 cut(s) 49, 311, 398
AseI ATTAAT 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 193, 221
AvaII GGWCC 1 cut(s) 170
BaeI ACNNNNGTAYC 2 cut(s) 54, 87
BanI GGYRCC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 229, 362
BbvI GCAGC 3 cut(s) 434, 485, 488
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 3 cut(s) 233, 432, 486
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 381, 420
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 2 cut(s) 33, 388
BisI GCNGC 3 cut(s) 423, 474, 477
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 3 cut(s) 424, 475, 478
Bme1390I CCNGG 3 cut(s) 233, 432, 486
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 3 cut(s) 233, 432, 486
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 238
Bse1I ACTGG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 3 cut(s) 233, 432, 486
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 2 cut(s) 250, 349
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 80, 238
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 3 cut(s) 434, 485, 488
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 229, 362
BslI CCNNNNNNNGG 2 cut(s) 80, 238
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 229, 362
Bsp143I GATC 3 cut(s) 37, 109, 211
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 2 cut(s) 9, 148
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 2 cut(s) 385, 424
BspMI ACCTGC 2 cut(s) 33, 388
BspPI GGATC 2 cut(s) 104, 219
BspT107I GGYRCC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 3 cut(s) 37, 109, 211
Bst2UI CCWGG 3 cut(s) 233, 432, 486
Bst4CI ACNGT 2 cut(s) 181, 496
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 2 cut(s) 250, 349
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 40, 112, 214
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 37, 109, 211
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 3 cut(s) 233, 432, 486
BstSCI CCNGG 3 cut(s) 231, 430, 484
BstSFI CTRYAG 2 cut(s) 381, 420
BstV1I GCAGC 3 cut(s) 434, 485, 488
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 250, 349
BtsIMutI CAGTG 1 cut(s) 492
BveI ACCTGC 2 cut(s) 33, 388
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 71
CviAII CATG 4 cut(s) 5, 203, 331, 415
CviJI RGCY 6 cut(s) 61, 249, 394, 425, 479, 484
CviKI_1 RGCY 6 cut(s) 61, 249, 394, 425, 479, 484
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 480
DpnI GATC 3 cut(s) 39, 111, 213
DpnII GATC 3 cut(s) 37, 109, 211
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 231, 430, 484
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 206, 334, 418
FaiI YATR 7 cut(s) 6, 30, 204, 252, 332, 416, 470
FatI CATG 4 cut(s) 4, 202, 330, 414
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 423, 474, 477
FokI GGATG 2 cut(s) 257, 356
Fsp4HI GCNGC 3 cut(s) 423, 474, 477
GlaI GCGC 1 cut(s) 457
GluI GCNGC 3 cut(s) 423, 474, 477
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 1 cut(s) 61
HhaI GCGC 1 cut(s) 458
Hin1II CATG 4 cut(s) 8, 206, 334, 418
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 1 cut(s) 504
HphI GGTGA 2 cut(s) 193, 221
Hpy166II GTNNAC 2 cut(s) 86, 162
Hpy188I TCNGA 3 cut(s) 47, 109, 198
Hpy188III TCNNGA 3 cut(s) 20, 173, 447
Hpy8I GTNNAC 2 cut(s) 86, 162
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 181, 496
HpyCH4V TGCA 5 cut(s) 4, 28, 383, 422, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 4 cut(s) 8, 206, 334, 418
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 37, 109, 211
LmnI GCTCC 1 cut(s) 411
Lsp1109I GCAGC 3 cut(s) 434, 485, 488
LweI GCATC 1 cut(s) 507
MabI ACCWGGT 1 cut(s) 231
MaeIII GTNAC 4 cut(s) 92, 181, 277, 496
MalI GATC 3 cut(s) 39, 111, 213
MbiI CCGCTC 1 cut(s) 148
MboI GATC 3 cut(s) 37, 109, 211
MboII GAAGA 1 cut(s) 185
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 229, 362
MluCI AATT 5 cut(s) 31, 49, 298, 311, 398
MnlI CCTC 3 cut(s) 51, 131, 235
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 3 cut(s) 353, 374, 402
MslI CAYNNNNRTG 1 cut(s) 355
MspR9I CCNGG 3 cut(s) 233, 432, 486
MvaI CCWGG 3 cut(s) 233, 432, 486
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 3 cut(s) 37, 109, 211
NlaIII CATG 4 cut(s) 8, 206, 334, 418
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 3 cut(s) 92, 181, 277
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 504
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 424, 475, 478
PshBI ATTAAT 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 231, 430, 484
PspGI CCWGG 3 cut(s) 231, 430, 484
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 2 cut(s) 385, 424
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 3 cut(s) 353, 374, 402
SatI GCNGC 3 cut(s) 423, 474, 477
Sau3AI GATC 3 cut(s) 37, 109, 211
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 233, 432, 486
SduI GDGCHC 2 cut(s) 229, 362
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 2 cut(s) 381, 420
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 355
Sse9I AATT 5 cut(s) 31, 49, 298, 311, 398
SsiI CCGC 2 cut(s) 9, 148
SspI AATATT 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 231, 430, 484
TaaI ACNGT 2 cut(s) 181, 496
TasI AATT 5 cut(s) 31, 49, 298, 311, 398
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 3 cut(s) 353, 374, 402
Tru9I TTAA 3 cut(s) 353, 374, 402
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 3 cut(s) 92, 181, 277
TseI GCWGC 3 cut(s) 422, 473, 476
Tsp45I GTSAC 3 cut(s) 92, 181, 277
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 3 cut(s) 49, 311, 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.