Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014268

Physical Location & Seq

Genomic Coordinates Forward (+)

17512816 .. 17515155

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCAACAGCAACATCAGCTTCTCTGTTTTCAACTGTTTCTTCATCTTACTCCAAAGCTAGCTCCATACCACATTCAAGACTCCAATCTGTGAAATTCAACTCAGTCCCTAGCTTCACCGGTCTCAAATCAACCTCTCTCATCTCCGGATCTGATTCCTCTTCCTTAGCCAAGACTCTACGCGGTTCCGTAACGAAAGCACAAACATCTGACAAGAAGCCTTACGGATTCAAAATCAACGCTTCATACAAAGTAGCTGTTCTTGGTGCTGCTGGTGGTATAGGTCAGCCTTTATCACTTCTCATCAAGATGTCTCCGTTAGTCTCTACGCTTCATCTTTACGATATCGCCAATGTTAAAGGAGTTGCTGCTGATCTAAGTCATTGTAACACTCCTTCTCAAGTTCGTGATTTCACTGGTCCTTCTGAGTTAGCTGATTGTTTGAAAGATGTTAACGTTGTTGTCATCCCTGCTGGTGTGCCGAGGAAACCCGGTATGACTCGTGACGATCTTTTCAACATCAATGCCAATATTGTCAAGACTCTTGTTGAAGCTGTTGCTGAGAATTGCCCTAATGCTTTCATTCATATTATTAGTAACCCGGTTAACTCTACGGTACCTATTGCTGCTGAAGTGTTGAAGAAGAAAGGTGTTTATGATCCTAAGAAGCTGTTTGGTGTCACTACTTTGGATGTTGTGAGGGCTAACACTTTTGTTTCTCAGAAGAAGAATCTTAAGCTTATTGATGTTGATGTTCCGGTTATTGGTGGACATGCTGGAATCACCATTTTGCCTCTCCTCTCGAAGACAAAACCGTCTGTTAACTTTACTGATGAAGAGATCCAAGAGCTCACTGTTAGGATTCAGAACGCTGGTACTGAGGTTGTTGATGCTAAGGCAGGTGCAGGTTCAGCTACTTTGTCAATGGCTTATGCTGCTGCTAGATTTGTAGAGTCATCTCTTCGTGCTCTTGATGGAGACGGAGATGTCTACGAGTGCTCGTTTGTGGAGTCGACTCTGACTGATCTTCCTTTCTTTGCATCACGGGTTAAGATAGGGAAGAACGGTCTTGAAGCTGTGATTGAGTCAGACCTTCAGGGATTGACTGAGTATGAGCAGAAAGCACTAGAAGCTCTTAAGGTAGAATTGAAAGCTAGCATTGACAAGGGTGTCGCATTTGCAAACAAACCAGCTGCTGCAGCAGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

403

Amino Acids

42.41

Weight (kDa)

8.66

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	84 - 226	6.6e-49	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	228 - 393	6.2e-43	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47520
fragaria_vesca	FvH4_5g14890
malus_domestica	MD06G1193800.v1.1
prunus_persica	Prupe.5G194200_v2.0.a1
pyrus_communis	pycom06g17180
rosa_chinensis	RchiOBHm_Chr7g0181501
rosa_laevigata	RLG00000005188
rosa_multiflora	Rmu_sc0017276.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271950
rosa_rugosa	Rorug06G0441800 Rorug06G0441900
rosa_samantha	Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana	Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	890
AasI	GACNNNNNNGTC	3 cut(s)	814, 986, 1169
Acc36I	ACCTGC	2 cut(s)	890, 896
Acc65I	GGTACC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	616
AccI	GTMKAC	2 cut(s)	990, 1013
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	1 cut(s)	183
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	3 cut(s)	157, 653, 835
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	2 cut(s)	651, 1079
AfaI	GTAC	2 cut(s)	618, 877
AfiI	CCNNNNNNNGG	1 cut(s)	764
AflII	CTTAAG	2 cut(s)	734, 1136
AgeI	ACCGGT	1 cut(s)	119
Alw21I	GWGCWC	3 cut(s)	852, 970, 1001
Alw26I	GTCTC	4 cut(s)	128, 318, 328, 972
AlwI	GGATC	3 cut(s)	157, 653, 835
AlwNI	CAGNNNCTG	1 cut(s)	1196
Aor13HI	TCCGGA	1 cut(s)	146
ApeKI	GCWGC	9 cut(s)	269, 368, 626, 935, 938, 1193, 1196, 1199, 1202
ApoI	RAATTY	1 cut(s)	95
AsiGI	ACCGGT	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	492, 602
AsuHPI	GGTGA	2 cut(s)	109, 775
AsuNHI	GCTAGC	2 cut(s)	59, 1154
AvaII	GGWCC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	867, 900
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	852
BarI	GAAGNNNNNNTAC	2 cut(s)	379, 411
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	3 cut(s)	852, 970, 1001
BbvI	GCAGC	7 cut(s)	256, 355, 613, 922, 925, 1180, 1183
BccI	CCATC	1 cut(s)	968
BcnI	CCSGG	2 cut(s)	492, 602
BcoDI	GTCTC	4 cut(s)	128, 318, 328, 972
BfaI	CTAG	6 cut(s)	60, 111, 942, 1127, 1155, 1210
BfmI	CTRYAG	1 cut(s)	1197
BfrI	CTTAAG	2 cut(s)	734, 1136
BfuAI	ACCTGC	2 cut(s)	890, 896
BisI	GCNGC	9 cut(s)	270, 369, 627, 936, 939, 1194, 1197, 1200, 1203
BlsI	GCNGC	9 cut(s)	271, 370, 628, 937, 940, 1195, 1198, 1201, 1204
Bme1390I	CCNGG	2 cut(s)	492, 602
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	187, 618
BmrFI	CCNGG	2 cut(s)	492, 602
BmsI	GCATC	2 cut(s)	880, 1049
BmtI	GCTAGC	2 cut(s)	63, 1158
BpiI	GAAGAC	1 cut(s)	812
Bpu10I	CCTNAGC	2 cut(s)	166, 894
BpuEI	CTTGAG	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	492, 602
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	3 cut(s)	119, 146, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	465, 697
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMII	CTCAG	6 cut(s)	117, 417, 552, 734, 870, 1098
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	7 cut(s)	256, 355, 613, 922, 925, 1180, 1183
BsgI	GTGCAG	1 cut(s)	924
Bsh1236I	CGCG	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	616
BshTI	ACCGGT	1 cut(s)	119
BsiHKAI	GWGCWC	3 cut(s)	852, 970, 1001
BsiSI	CCGG	5 cut(s)	120, 147, 492, 602, 758
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	4 cut(s)	128, 318, 328, 972
BsmBI	CGTCTC	1 cut(s)	972
BsmFI	GGGAC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	852, 970, 1001
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	6 cut(s)	116, 418, 553, 733, 871, 1099
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	187, 618
BspMAI	CTGCAG	1 cut(s)	1201
BspMI	ACCTGC	2 cut(s)	890, 896
BspOI	GCTAGC	2 cut(s)	63, 1158
BspPI	GGATC	3 cut(s)	157, 653, 835
BspT107I	GGYRCC	1 cut(s)	616
BspTI	CTTAAG	2 cut(s)	734, 1136
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	5 cut(s)	37, 616, 816, 856, 1067
Bst6I	CTCTTC	3 cut(s)	166, 831, 966
BstAFI	CTTAAG	2 cut(s)	734, 1136
BstC8I	GCNNGC	2 cut(s)	61, 1156
BstF5I	GGATG	2 cut(s)	465, 697
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	6 cut(s)	152, 376, 511, 661, 843, 1027
BstMAI	GTCTC	4 cut(s)	128, 318, 328, 972
BstMBI	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 911, 935, 1130, 1199, 1202
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	490, 600
BstSFI	CTRYAG	1 cut(s)	1197
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	7 cut(s)	256, 355, 613, 922, 925, 1180, 1183
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	2 cut(s)	149, 840
BstYI	RGATCY	2 cut(s)	149, 840
BtsCI	GGATG	2 cut(s)	465, 697
BtsIMutI	CAGTG	2 cut(s)	414, 852
BveI	ACCTGC	2 cut(s)	890, 896
Cac8I	GCNNGC	2 cut(s)	61, 1156
CaiI	CAGNNNCTG	1 cut(s)	1196
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	617, 876
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	1 cut(s)	773
CviQI	GTAC	2 cut(s)	617, 876
DpnI	GATC	6 cut(s)	151, 375, 510, 660, 842, 1026
DpnII	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
DrdI	GACNNNNNNGTC	3 cut(s)	814, 986, 1169
DseDI	GACNNNNNNGTC	3 cut(s)	814, 986, 1169
Eam1104I	CTCTTC	3 cut(s)	166, 831, 966
EarI	CTCTTC	3 cut(s)	166, 831, 966
Ecl136II	GAGCTC	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	852
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	2 cut(s)	651, 1079
EcoICRI	GAGCTC	1 cut(s)	850
EcoRV	GATATC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	852
Esp3I	CGTCTC	1 cut(s)	972
FaeI	CATG	1 cut(s)	776
FaiI	YATR	9 cut(s)	68, 247, 281, 497, 588, 657, 774, 933, 1113
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	772
FblI	GTMKAC	2 cut(s)	990, 1013
Fnu4HI	GCNGC	9 cut(s)	270, 369, 627, 936, 939, 1194, 1197, 1200, 1203
FokI	GGATG	2 cut(s)	452, 704
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	9 cut(s)	270, 369, 627, 936, 939, 1194, 1197, 1200, 1203
FspBI	CTAG	6 cut(s)	60, 111, 942, 1127, 1155, 1210
GluI	GCNGC	9 cut(s)	270, 369, 627, 936, 939, 1194, 1197, 1200, 1203
HapII	CCGG	5 cut(s)	120, 147, 492, 602, 758
Hin1II	CATG	1 cut(s)	776
HincII	GTYRAC	4 cut(s)	454, 607, 823, 1014
HindII	GTYRAC	4 cut(s)	454, 607, 823, 1014
HindIII	AAGCTT	1 cut(s)	737
HpaI	GTTAAC	3 cut(s)	454, 607, 823
HpaII	CCGG	5 cut(s)	120, 147, 492, 602, 758
HphI	GGTGA	2 cut(s)	109, 775
Hpy166II	GTNNAC	6 cut(s)	454, 607, 770, 823, 991, 1014
Hpy188I	TCNGA	7 cut(s)	154, 211, 427, 723, 867, 1020, 1090
Hpy188III	TCNNGA	9 cut(s)	78, 147, 307, 407, 503, 538, 802, 971, 1070
Hpy8I	GTNNAC	6 cut(s)	454, 607, 770, 823, 991, 1014
HpyAV	CCTTC	3 cut(s)	405, 432, 1103
HpyCH4III	ACNGT	5 cut(s)	37, 616, 816, 856, 1067
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	905, 1040, 1181, 1199
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 911, 935, 1130, 1199, 1202
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	776
Kpn2I	TCCGGA	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	620
KspAI	GTTAAC	3 cut(s)	454, 607, 823
Kzo9I	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	7 cut(s)	256, 355, 613, 922, 925, 1180, 1183
LweI	GCATC	2 cut(s)	880, 1049
MaeI	CTAG	6 cut(s)	60, 111, 942, 1127, 1155, 1210
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	5 cut(s)	190, 386, 503, 596, 679
MalI	GATC	6 cut(s)	151, 375, 510, 660, 842, 1026
MboI	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
MflI	RGATCY	2 cut(s)	149, 840
MhlI	GDGCHC	3 cut(s)	852, 970, 1001
MluCI	AATT	3 cut(s)	95, 565, 1145
MlyI	GAGTC	8 cut(s)	75, 169, 493, 535, 962, 1009, 1019, 1094
MnlI	CCTC	7 cut(s)	145, 169, 477, 693, 804, 809, 874
MroI	TCCGGA	1 cut(s)	146
MseI	TTAA	7 cut(s)	357, 453, 606, 735, 822, 1050, 1137
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	1193
MspCI	CTTAAG	2 cut(s)	734, 1136
MspI	CCGG	5 cut(s)	120, 147, 492, 602, 758
MspR9I	CCNGG	2 cut(s)	492, 602
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	6 cut(s)	17, 911, 935, 1130, 1199, 1202
NciI	CCSGG	2 cut(s)	492, 602
NdeII	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
NheI	GCTAGC	2 cut(s)	59, 1154
NlaIII	CATG	1 cut(s)	776
NlaIV	GGNNCC	2 cut(s)	187, 618
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	503, 679
NspI	RCATGY	1 cut(s)	776
PaqCI	CACCTGC	1 cut(s)	890
PfeI	GAWTC	5 cut(s)	155, 228, 730, 780, 862
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	9 cut(s)	271, 370, 628, 937, 940, 1195, 1198, 1201, 1204
PleI	GAGTC	8 cut(s)	75, 169, 493, 535, 961, 1009, 1018, 1093
PpsI	GAGTC	8 cut(s)	75, 169, 493, 535, 961, 1009, 1018, 1093
Psp124BI	GAGCTC	1 cut(s)	852
Psp1406I	AACGTT	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	187, 618
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	1201
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	2 cut(s)	149, 840
PvuII	CAGCTG	1 cut(s)	1193
RsaI	GTAC	2 cut(s)	618, 877
RsaNI	GTAC	2 cut(s)	617, 876
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	852
SalI	GTCGAC	1 cut(s)	1012
SaqAI	TTAA	7 cut(s)	357, 453, 606, 735, 822, 1050, 1137
SatI	GCNGC	9 cut(s)	270, 369, 627, 936, 939, 1194, 1197, 1200, 1203
Sau3AI	GATC	6 cut(s)	149, 373, 508, 658, 840, 1024
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	8 cut(s)	75, 169, 493, 535, 962, 1009, 1019, 1094
ScrFI	CCNGG	2 cut(s)	492, 602
SduI	GDGCHC	3 cut(s)	852, 970, 1001
SfaNI	GCATC	2 cut(s)	880, 1049
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	399, 734, 1136
SmoI	CTYRAG	3 cut(s)	399, 734, 1136
Sse9I	AATT	3 cut(s)	95, 565, 1145
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	6 cut(s)	60, 111, 942, 1127, 1155, 1210
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	490, 600
TaaI	ACNGT	5 cut(s)	37, 616, 816, 856, 1067
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	803, 1013
TasI	AATT	3 cut(s)	95, 565, 1145
TfiI	GAWTC	5 cut(s)	155, 228, 730, 780, 862
Tru1I	TTAA	7 cut(s)	357, 453, 606, 735, 822, 1050, 1137
Tru9I	TTAA	7 cut(s)	357, 453, 606, 735, 822, 1050, 1137
TscAI	CASTG	2 cut(s)	421, 859
TseFI	GTSAC	2 cut(s)	503, 679
TseI	GCWGC	9 cut(s)	269, 368, 626, 935, 938, 1193, 1196, 1199, 1202
Tsp45I	GTSAC	2 cut(s)	503, 679
TspDTI	ATGAA	6 cut(s)	33, 234, 323, 571, 575, 849
TspGWI	ACGGA	4 cut(s)	178, 240, 306, 996
TspRI	CASTG	2 cut(s)	421, 859
Vha464I	CTTAAG	2 cut(s)	734, 1136
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	776
XmiI	GTMKAC	2 cut(s)	990, 1013
XspI	CTAG	6 cut(s)	60, 111, 942, 1127, 1155, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.