Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014268

Physical Location & Seq

Genomic Coordinates Forward (+)

8434182 .. 8436376

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCAGCAACAGCAGCAGCTACCTTTTCCGTCGGAACTGCCTTTTCCGTTGGCCGGAAAGGAGTATCAACCGCACAGTCGAAGCCTTGTGCTTTGAGGTTCACCACCCAAAACCCTCTCAAGAGTTTCAGTGGCCTTAAGGCGGCGAGTGGATCGTTTGCATGTGAATCTGAGTCGTCATTCTTTGGCAAGGAGACCACTGCAGCTATTCGAGCTTCTTATGCTTTGAAAGCGCACAAGGAAGCCGTGGTGGTTCAGCAGCCGCAGGCATCTTATAAAGTAGCTGTTCTTGGAGCTGCTGGGGGGATTGGCCAGCCCTTGGCGCTTCTCATCAAGATGTCTCCTTTGGTGTCTTCCCTGCATTTGTATGATATTGCCAATGTCAAGGGTGTTGCGGCTGATCTCAGTCACTGCAACACTCCCTCGCAGGTTCTTGATTTCACGGGAGCTGATGAGTTGGCTGAGTGTTTGAAAGGTGTGGACGTGGTTGTCATTCCTGCTGGAGTTCCAAGGAAGCCTGGCATGACCCGTGATGATCTCTTTAACATCAATGCCGGCATTGTGAAGAACTTGATTGAGGCTGTTGCTGATAACTGCCCTGATGCTTTCATTCACATCATCAGTAACCCGGTCAACTCTACCGTGCCTATTGCTGCTGAGGTTATGAAGCAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTTTCTACTTTGGATGTGGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAATCTGAAATTGATTGATGTGGATGTACCAGTTGTTGGTGGACATGCTGGGATAACTATATTGCCCTTGCTGTCGAAGACAAAACCCTCAGTCAGCCTCTCTGATGAAGAAGTTGCAGAGCTGACTGTTAGGATTCAGAATGCTGGAACCGAAGTTGTGGAGGCAAAGGCAGGTGCTGGGTCTGCAACATTGTCAATGGCATATGCTGCAGCCAGATTTGTTGAGTCGTCTCTCCGTGCACTGGATGGAGACAGTGATGTCTATGAGTGCTCTTATGTGGATTCAAATTTGACTGAGCTTCCATTCTTTGCTTCAAGGATTAAGATTGGAAAGGAAGGAGTTGAAGCTTTGATACCATCTGACCTCCAGGGTCTGACAGAGTACGAACAAAAGGCTCTGGAAGCACTTAAGCCAGAACTGAAAGCCAGCATTGAGAAGGGTATTGCATTTGCCAACAAGCAACCAGTGGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

411

Amino Acids

42.91

Weight (kDa)

6.55

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	93 - 235	6.5e-48	lactate/malate dehydrogenase, NAD binding domain
3Beta_HSD	PF01073	95 - 205	7.3e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
Ldh_1_C	PF02866	238 - 402	3.5e-42	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47520
fragaria_vesca	FvH4_5g14890
malus_domestica	MD06G1193800.v1.1
prunus_persica	Prupe.5G194200_v2.0.a1
pyrus_communis	pycom06g17180
rosa_chinensis	RchiOBHm_Chr7g0181501
rosa_laevigata	RLG00000005188
rosa_multiflora	Rmu_sc0017276.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271950
rosa_rugosa	Rorug06G0441800 Rorug06G0441900
rosa_samantha	Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana	Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	276, 684
AarI	CACCTGC	1 cut(s)	917
AasI	GACNNNNNNGTC	2 cut(s)	488, 1013
Acc36I	ACCTGC	2 cut(s)	418, 917
AccB7I	CCANNNNNTGG	2 cut(s)	319, 791
AciI	CCGC	4 cut(s)	72, 143, 263, 395
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	52, 310
AcsI	RAATTY	1 cut(s)	1042
AfaI	GTAC	2 cut(s)	783, 1139
AfiI	CCNNNNNNNGG	5 cut(s)	54, 142, 319, 791, 997
AflII	CTTAAG	2 cut(s)	137, 1163
AgsI	TTSAA	5 cut(s)	229, 472, 1041, 1071, 1100
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	517, 1122
Alw21I	GWGCWC	2 cut(s)	997, 1028
Alw26I	GTCTC	4 cut(s)	188, 345, 990, 999
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	4 cut(s)	411, 932, 1129, 1226
AoxI	GGCC	3 cut(s)	52, 133, 310
ApaLI	GTGCAC	1 cut(s)	993
ApoI	RAATTY	1 cut(s)	1042
AspLEI	GCGC	2 cut(s)	235, 325
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	94, 736
BaeGI	GKGCMC	1 cut(s)	997
BalI	TGGCCA	1 cut(s)	312
BarI	GAAGNNNNNNTAC	2 cut(s)	1092, 1124
BbsI	GAAGAC	2 cut(s)	345, 839
Bbv12I	GWGCWC	2 cut(s)	997, 1028
BbvCI	CCTCAGC	1 cut(s)	657
BccI	CCATC	2 cut(s)	995, 1120
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	519, 1124
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	4 cut(s)	188, 345, 990, 999
BfmI	CTRYAG	2 cut(s)	201, 963
BfoI	RGCGCY	1 cut(s)	326
BfrI	CTTAAG	2 cut(s)	137, 1163
BfuAI	ACCTGC	2 cut(s)	418, 917
Bme1390I	CCNGG	3 cut(s)	519, 629, 1124
BmgBI	CACGTC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	3 cut(s)	519, 629, 1124
BmsI	GCATC	2 cut(s)	278, 592
BpiI	GAAGAC	2 cut(s)	345, 839
BpmI	CTGGAG	2 cut(s)	522, 1106
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	246, 318, 509, 1123
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 142, 319, 791, 997
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	785, 1002, 1220
BseBI	CCWGG	2 cut(s)	519, 1124
BseDI	CCNNGG	4 cut(s)	246, 318, 509, 1123
BseGI	GGATG	3 cut(s)	724, 784, 1006
BseLI	CCNNNNNNNGG	5 cut(s)	54, 142, 319, 791, 997
BseMII	CTCAG	7 cut(s)	162, 418, 453, 648, 761, 858, 1041
BseNI	ACTGG	3 cut(s)	785, 1002, 1220
BseSI	GKGCMC	1 cut(s)	997
BseYI	CCCAGC	3 cut(s)	299, 803, 932
BshFI	GGCC	3 cut(s)	54, 135, 312
BsiHKAI	GWGCWC	2 cut(s)	997, 1028
BsiSI	CCGG	3 cut(s)	55, 555, 629
BslI	CCNNNNNNNGG	5 cut(s)	54, 142, 319, 791, 997
BsmAI	GTCTC	4 cut(s)	188, 345, 990, 999
BsmBI	CGTCTC	1 cut(s)	990
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	54, 135, 312
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	997, 1028
Bsp143I	GATC	3 cut(s)	152, 400, 535
BspACI	CCGC	4 cut(s)	72, 143, 263, 395
BspANI	GGCC	3 cut(s)	54, 135, 312
BspCNI	CTCAG	7 cut(s)	163, 417, 454, 649, 760, 857, 1042
BspLI	GGNNCC	1 cut(s)	904
BspMAI	CTGCAG	2 cut(s)	205, 967
BspMI	ACCTGC	2 cut(s)	418, 917
BspPI	GGATC	1 cut(s)	160
BspTI	CTTAAG	2 cut(s)	137, 1163
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	785, 1002, 1220
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	4 cut(s)	246, 318, 509, 1123
BssMI	GATC	3 cut(s)	152, 400, 535
BssT1I	CCWWGG	2 cut(s)	318, 509
Bst2UI	CCWGG	2 cut(s)	519, 1124
Bst4CI	ACNGT	4 cut(s)	78, 643, 883, 1010
BstAFI	CTTAAG	2 cut(s)	137, 1163
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstC8I	GCNNGC	4 cut(s)	267, 314, 556, 1183
BstDEI	CTNAG	7 cut(s)	171, 404, 462, 657, 747, 844, 1050
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	724, 784, 1006
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	235, 325
BstKTI	GATC	3 cut(s)	155, 403, 538
BstMAI	GTCTC	4 cut(s)	188, 345, 990, 999
BstMBI	GATC	3 cut(s)	152, 400, 535
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 14, 212, 221, 230, 322, 938, 962, 1157
BstNI	CCWGG	2 cut(s)	519, 1124
BstNSI	RCATGY	2 cut(s)	165, 803
BstSCI	CCNGG	3 cut(s)	517, 627, 1122
BstSFI	CTRYAG	2 cut(s)	201, 963
BstSLI	GKGCMC	1 cut(s)	997
BstV2I	GAAGAC	2 cut(s)	345, 839
BsuRI	GGCC	3 cut(s)	54, 135, 312
BtgI	CCRYGG	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	724, 784, 1006
BtsI	GCAGTG	2 cut(s)	198, 409
BtsIMutI	CAGTG	6 cut(s)	136, 198, 409, 995, 1015, 1227
BveI	ACCTGC	2 cut(s)	418, 917
Cac8I	GCNNGC	4 cut(s)	267, 314, 556, 1183
CaiI	CAGNNNCTG	4 cut(s)	411, 932, 1129, 1226
CfoI	GCGC	2 cut(s)	235, 325
Cfr10I	RCCGGY	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	782, 1138
CviAII	CATG	3 cut(s)	162, 523, 800
CviQI	GTAC	2 cut(s)	782, 1138
DdeI	CTNAG	7 cut(s)	171, 404, 462, 657, 747, 844, 1050
DpnI	GATC	3 cut(s)	154, 402, 537
DpnII	GATC	3 cut(s)	152, 400, 535
DrdI	GACNNNNNNGTC	2 cut(s)	488, 1013
DseDI	GACNNNNNNGTC	2 cut(s)	488, 1013
EaeI	YGGCCR	2 cut(s)	52, 310
Eco130I	CCWWGG	2 cut(s)	318, 509
Eco31I	GGTCTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	517, 1122
EcoT14I	CCWWGG	2 cut(s)	318, 509
ErhI	CCWWGG	2 cut(s)	318, 509
Esp3I	CGTCTC	1 cut(s)	990
FaeI	CATG	3 cut(s)	165, 526, 803
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FatI	CATG	3 cut(s)	161, 522, 799
FauNDI	CATATG	1 cut(s)	958
FokI	GGATG	3 cut(s)	731, 791, 1013
GlaI	GCGC	2 cut(s)	234, 324
GsaI	CCCAGC	3 cut(s)	303, 807, 936
GsuI	CTGGAG	2 cut(s)	522, 1106
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	54, 135, 312
HapII	CCGG	3 cut(s)	55, 555, 629
HhaI	GCGC	2 cut(s)	235, 325
Hin1II	CATG	3 cut(s)	165, 526, 803
Hin6I	GCGC	2 cut(s)	233, 323
HinP1I	GCGC	2 cut(s)	233, 323
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	1101
HinfI	GANTC	6 cut(s)	167, 173, 757, 889, 980, 1037
HpaII	CCGG	3 cut(s)	55, 555, 629
HphI	GGTGA	2 cut(s)	94, 736
Hpy166II	GTNNAC	5 cut(s)	102, 481, 634, 797, 995
Hpy188I	TCNGA	8 cut(s)	35, 172, 750, 762, 859, 894, 1117, 1131
Hpy188III	TCNNGA	4 cut(s)	121, 334, 434, 1154
Hpy8I	GTNNAC	5 cut(s)	102, 481, 634, 797, 995
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	667, 1085, 1186
HpyCH4III	ACNGT	4 cut(s)	78, 643, 883, 1010
HpyCH4IV	ACGT	1 cut(s)	483
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 14, 212, 221, 230, 322, 938, 962, 1157
HpyF3I	CTNAG	7 cut(s)	171, 404, 462, 657, 747, 844, 1050
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	165, 526, 803
HspAI	GCGC	2 cut(s)	233, 323
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	152, 400, 535
LmnI	GCTCC	2 cut(s)	293, 446
LweI	GCATC	2 cut(s)	278, 592
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	407, 623
MalI	GATC	3 cut(s)	154, 402, 537
MboI	GATC	3 cut(s)	152, 400, 535
MboII	GAAGA	6 cut(s)	345, 577, 763, 766, 844, 875
MhlI	GDGCHC	2 cut(s)	997, 1028
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	2 cut(s)	764, 1042
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	182, 989
MmeI	TCCRAC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	4 cut(s)	138, 543, 1077, 1164
MslI	CAYNNNNRTG	2 cut(s)	335, 366
Msp20I	TGGCCA	1 cut(s)	312
MspCI	CTTAAG	2 cut(s)	137, 1163
MspI	CCGG	3 cut(s)	55, 555, 629
MspR9I	CCNGG	3 cut(s)	519, 629, 1124
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	519, 1124
MwoI	GCNNNNNNNGC	9 cut(s)	11, 14, 212, 221, 230, 322, 938, 962, 1157
NaeI	GCCGGC	1 cut(s)	556
NciI	CCSGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	3 cut(s)	152, 400, 535
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	3 cut(s)	165, 526, 803
NlaIV	GGNNCC	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	165, 803
PaqCI	CACCTGC	1 cut(s)	917
PctI	GAATGC	1 cut(s)	901
PdiI	GCCGGC	1 cut(s)	556
PfeI	GAWTC	4 cut(s)	167, 757, 889, 1037
PflMI	CCANNNNNTGG	2 cut(s)	319, 791
PleI	GAGTC	2 cut(s)	181, 988
PpsI	GAGTC	2 cut(s)	181, 988
PsiI	TTATAA	2 cut(s)	276, 684
Psp6I	CCWGG	2 cut(s)	517, 1122
PspFI	CCCAGC	3 cut(s)	299, 803, 932
PspGI	CCWGG	2 cut(s)	517, 1122
PspN4I	GGNNCC	1 cut(s)	904
PstI	CTGCAG	2 cut(s)	205, 967
PstNI	CAGNNNCTG	4 cut(s)	411, 932, 1129, 1226
RsaI	GTAC	2 cut(s)	783, 1139
RsaNI	GTAC	2 cut(s)	782, 1138
RseI	CAYNNNNRTG	2 cut(s)	335, 366
SaqAI	TTAA	4 cut(s)	138, 543, 1077, 1164
Sau3AI	GATC	3 cut(s)	152, 400, 535
SchI	GAGTC	2 cut(s)	182, 989
ScrFI	CCNGG	3 cut(s)	519, 629, 1124
SduI	GDGCHC	2 cut(s)	997, 1028
SfaNI	GCATC	2 cut(s)	278, 592
SfcI	CTRYAG	2 cut(s)	201, 963
SmiMI	CAYNNNNRTG	2 cut(s)	335, 366
SmlI	CTYRAG	3 cut(s)	119, 137, 1163
SmoI	CTYRAG	3 cut(s)	119, 137, 1163
Sse9I	AATT	2 cut(s)	764, 1042
SsiI	CCGC	4 cut(s)	72, 143, 263, 395
StyD4I	CCNGG	3 cut(s)	517, 627, 1122
StyI	CCWWGG	2 cut(s)	318, 509
TaaI	ACNGT	4 cut(s)	78, 643, 883, 1010
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	80, 211, 830
TasI	AATT	2 cut(s)	764, 1042
TauI	GCSGC	3 cut(s)	146, 265, 398
TfiI	GAWTC	4 cut(s)	167, 757, 889, 1037
Tru1I	TTAA	4 cut(s)	138, 543, 1077, 1164
Tru9I	TTAA	4 cut(s)	138, 543, 1077, 1164
TscAI	CASTG	6 cut(s)	136, 205, 416, 1002, 1015, 1227
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	598, 680, 876
TspGWI	ACGGA	3 cut(s)	19, 37, 980
TspRI	CASTG	6 cut(s)	136, 205, 416, 1002, 1015, 1227
Van91I	CCANNNNNTGG	2 cut(s)	319, 791
Vha464I	CTTAAG	2 cut(s)	137, 1163
VneI	GTGCAC	1 cut(s)	993
XapI	RAATTY	1 cut(s)	1042
XceI	RCATGY	2 cut(s)	165, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.