Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014268

Physical Location & Seq

Genomic Coordinates Reverse (-)

21212534 .. 21213442

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCGCCTTTGGTCTCCTCCCTGCATCTTTACGATATTGCTAATGTCAAGGGTGTCGCCGCTGACTTGAGTCACTGCAACACTCCCTCCGAAGTTCTCGATTTCACTGGAGCAGCTGAGTTGCCCAGTTCCTTGAAAGGTGTGGATGTGGTGGTCATTCCCGCCGGAGTTCCAAGAAAGCCTGGCATGACCCGTGATGACCTCTTCAACATCAATGCCGGCATTGTGAGGAACTTGATCGAGGCTGTGGCTGATAACTGTCCTGATGCATTCATCCACATTATCAGTAATCCGGTGAACTCCACGGTGCCAATTGCTGCAGAAGTTCTGAAGCAGAAGGGTGTATATAACCCTAAAAAGCTCTTTGGTGTTTCTACCTTGGATGTTGTGAGGGCGAACACATTTGTTGCTCAGAAGAAGAATCTGAAACTGATTGATGTTGATGTCCCGGTTGTTGGAGGACATGCTGGGATAACTATTCTGCCCCTGCTATCCAAGACAAAACCCTCAGTCAGCCTCACTGACGAAGAAGTTGAACAACTAACTTTTAGGATCGATCGCCGCCTGCAAAATGCTGGAACTGAGGTTGTAGAGGCAAAGGCAGGTGCTGGGTCCGCGACATTGTCAATGGCATATGCAGCAGCCAGGTTTGTTGAGTCATCTCTGCGGGCGCTGGACGGAGATGGGGATGTCTATGAGTGCTCTTATGTAGCATCTGATCTGATCGAGCTTCCATTCTTTGCATCAAGGGTTAAGCTTGGAAGGAACGGAATTGAAGCTTTCATACCGTCTGACCTCCAAGGTTTGACAGAGTATGAGCAAAAGGCTTTGGAAGCACTCAAGCCGGAACTGAAAGCCAGCATTGAGAAGGGTATTGCTTTTGCCAACAAGCAGACCGCGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

303

Amino Acids

32.14

Weight (kDa)

5.36

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	2 - 123	3.3e-36	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	126 - 294	3.7e-38	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47520
fragaria_vesca	FvH4_5g14890
malus_domestica	MD06G1193800.v1.1
prunus_persica	Prupe.5G194200_v2.0.a1
pyrus_communis	pycom06g17180
rosa_chinensis	RchiOBHm_Chr7g0181501
rosa_laevigata	RLG00000005188
rosa_multiflora	Rmu_sc0017276.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271950
rosa_rugosa	Rorug06G0441800 Rorug06G0441900
rosa_samantha	Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana	Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	307
AccII	CGCG	2 cut(s)	617, 899
AciI	CCGC	6 cut(s)	60, 162, 562, 615, 667, 897
AclWI	GGATC	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	136, 208, 536, 776
AjnI	CCWGG	2 cut(s)	181, 644
AluBI	AGCT	5 cut(s)	116, 361, 730, 757, 779
AluI	AGCT	5 cut(s)	116, 361, 730, 757, 779
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	113, 317, 638, 641
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	768, 800
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	4 cut(s)	125, 304, 650, 653
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	2 cut(s)	183, 646
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	593
BisI	GCNGC	6 cut(s)	60, 114, 318, 562, 639, 642
BlsI	GCNGC	6 cut(s)	61, 115, 319, 563, 640, 643
Bme1390I	CCNGG	3 cut(s)	183, 449, 646
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	309, 613
BmrFI	CCNGG	3 cut(s)	183, 449, 646
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	4 cut(s)	34, 256, 722, 752
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	88, 824
BpuMI	CCSGG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	303, 378, 799
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	112, 126
BseBI	CCWGG	2 cut(s)	183, 646
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	303, 378, 799
BseGI	GGATG	4 cut(s)	151, 273, 388, 694
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	4 cut(s)	108, 425, 522, 573
BseNI	ACTGG	2 cut(s)	112, 126
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	4 cut(s)	125, 304, 650, 653
BseYI	CCCAGC	2 cut(s)	467, 608
Bsh1236I	CGCG	2 cut(s)	617, 899
Bsh1285I	CGRYCG	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	704
BsiSI	CCGG	5 cut(s)	165, 219, 293, 449, 845
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	5 cut(s)	237, 552, 556, 718, 723
BspACI	CCGC	6 cut(s)	60, 162, 562, 615, 667, 897
BspCNI	CTCAG	4 cut(s)	109, 424, 521, 574
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	2 cut(s)	617, 899
BspLI	GGNNCC	2 cut(s)	309, 613
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	112, 126
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	303, 378, 799
BssMI	GATC	5 cut(s)	237, 552, 556, 718, 723
BssT1I	CCWWGG	2 cut(s)	378, 799
Bst2UI	CCWGG	2 cut(s)	183, 646
Bst4CI	ACNGT	3 cut(s)	260, 307, 789
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	220, 566, 669, 859
BstDEI	CTNAG	5 cut(s)	117, 411, 508, 582, 906
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	4 cut(s)	151, 273, 388, 694
BstFNI	CGCG	2 cut(s)	617, 899
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	5 cut(s)	240, 555, 559, 721, 726
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	5 cut(s)	237, 552, 556, 718, 723
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 638, 833
BstNI	CCWGG	2 cut(s)	183, 646
BstNSI	RCATGY	1 cut(s)	467
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	3 cut(s)	181, 447, 644
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	617, 899
BstV1I	GCAGC	4 cut(s)	125, 304, 650, 653
Bsu15I	ATCGAT	1 cut(s)	555
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	151, 273, 388, 694
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 105, 519
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	4 cut(s)	220, 566, 669, 859
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	555
CviAII	CATG	2 cut(s)	187, 464
DdeI	CTNAG	5 cut(s)	117, 411, 508, 582, 906
DpnI	GATC	5 cut(s)	239, 554, 558, 720, 725
DpnII	GATC	5 cut(s)	237, 552, 556, 718, 723
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	378, 799
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	181, 644
EcoT14I	CCWWGG	2 cut(s)	378, 799
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	378, 799
FaeI	CATG	2 cut(s)	190, 467
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	186, 463
FauI	CCCGC	2 cut(s)	169, 660
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	6 cut(s)	60, 114, 318, 562, 639, 642
FokI	GGATG	4 cut(s)	158, 260, 395, 701
Fsp4HI	GCNGC	6 cut(s)	60, 114, 318, 562, 639, 642
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	6 cut(s)	60, 114, 318, 562, 639, 642
GsaI	CCCAGC	2 cut(s)	471, 612
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	674
HapII	CCGG	5 cut(s)	165, 219, 293, 449, 845
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	2 cut(s)	190, 467
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HindIII	AAGCTT	2 cut(s)	755, 777
HinfI	GANTC	3 cut(s)	70, 421, 656
HpaII	CCGG	5 cut(s)	165, 219, 293, 449, 845
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	7 cut(s)	91, 330, 414, 426, 718, 723, 793
Hpy188III	TCNNGA	2 cut(s)	98, 263
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	331, 756, 862
HpyCH4III	ACNGT	3 cut(s)	260, 307, 789
HpyCH4V	TGCA	7 cut(s)	25, 78, 269, 320, 568, 638, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 638, 833
HpyF3I	CTNAG	5 cut(s)	117, 411, 508, 582, 906
Hsp92II	CATG	2 cut(s)	190, 467
HspAI	GCGC	1 cut(s)	671
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	237, 552, 556, 718, 723
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	4 cut(s)	125, 304, 650, 653
LweI	GCATC	4 cut(s)	34, 256, 722, 752
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	5 cut(s)	239, 554, 558, 720, 725
MboI	GATC	5 cut(s)	237, 552, 556, 718, 723
MboII	GAAGA	4 cut(s)	196, 427, 430, 539
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	2 cut(s)	312, 771
MlyI	GAGTC	2 cut(s)	79, 665
MmeI	TCCRAC	1 cut(s)	436
Mph1103I	ATGCAT	1 cut(s)	271
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	62, 116
MspI	CCGG	5 cut(s)	165, 219, 293, 449, 845
MspR9I	CCNGG	3 cut(s)	183, 449, 646
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	183, 646
MvnI	CGCG	2 cut(s)	617, 899
MwoI	GCNNNNNNNGC	3 cut(s)	614, 638, 833
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	449
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	237, 552, 556, 718, 723
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	190, 467
NlaIV	GGNNCC	2 cut(s)	309, 613
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	593
PctI	GAATGC	1 cut(s)	269
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	421
PflFI	GACNNNGTC	1 cut(s)	622
PkrI	GCNGC	6 cut(s)	61, 115, 319, 563, 640, 643
Ple19I	CGATCG	1 cut(s)	559
PleI	GAGTC	2 cut(s)	78, 664
PpsI	GAGTC	2 cut(s)	78, 664
PshAI	GACNNNNGTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	181, 644
PspFI	CCCAGC	2 cut(s)	467, 608
PspGI	CCWGG	2 cut(s)	181, 644
PspN4I	GGNNCC	2 cut(s)	309, 613
PspPI	GGNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	622
PvuI	CGATCG	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	6 cut(s)	60, 114, 318, 562, 639, 642
Sau3AI	GATC	5 cut(s)	237, 552, 556, 718, 723
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	2 cut(s)	79, 665
ScrFI	CCNGG	3 cut(s)	183, 449, 646
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	4 cut(s)	34, 256, 722, 752
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	67, 839
SmoI	CTYRAG	2 cut(s)	67, 839
Sse9I	AATT	2 cut(s)	312, 771
SsiI	CCGC	6 cut(s)	60, 162, 562, 615, 667, 897
StyD4I	CCNGG	3 cut(s)	181, 447, 644
StyI	CCWWGG	2 cut(s)	378, 799
TaaI	ACNGT	3 cut(s)	260, 307, 789
TaqI	TCGA	4 cut(s)	99, 240, 555, 726
TasI	AATT	2 cut(s)	312, 771
TauI	GCSGC	2 cut(s)	62, 564
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	3 cut(s)	80, 112, 526
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	4 cut(s)	113, 317, 638, 641
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	262, 772
TspGWI	ACGGA	2 cut(s)	693, 783
TspRI	CASTG	3 cut(s)	80, 112, 526
Tth111I	GACNNNGTC	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	612
XceI	RCATGY	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.