Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014268

Physical Location & Seq

Genomic Coordinates Reverse (-)

37200405 .. 37201631

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCAGCAGCAGCTACCTTTTCCATCGGAACCACATGTTCCGTTGGCCGGAAAGGAGTCTCAACCCCACAATCGAAGCCTTGTGCTTTGAGGTTCACCACCCAGAATCCTCTTAAGAGTTTCAGTGGCCTTAAGGCAACTACTTCTTATGCTCTGAAAGCCCAGACGGAAGCCTCGGTGGTTCAGCAGCCGCAGGCGTCTTACAAAGTAGCTGTTCTTGGAGCTGCTGGTGGGATTGGCCAGCCCTTGGCTCTTCTCATCAAGATGTCCCCTTTGGTGTCTTCCCTGCATTTGTACGATATTGCAAATGTCAAGGGTGTTGCGGCCGATCTCAGTCACTGCAACACTCCCTCCCAGGTTCTGGATTTCACCGGAGCTGATGAGTTGGCTAAATCTTTGAAAGGTGTGGATGTGGTTGTCATTCCTGCTGGAGTTCCAAGGAAGCCTGGCATGACCCGTGATGATCTCTTTAACATCAATGCCGGCATTGTGAAGACCTTGATTGAGGCTGTTGCTGATAACTGCCCAGATGCTTTCATTCACATCATCAGTAACCCAGTTAACTCTACCGTGCCAATTGCGGCTGAGGTTCTGAAGCAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTTTCTACTTTGGATGTTGTGAGGGCTAACACATTTATTGCTCAGAAGAAGAATCTGAAATTGATTGATGTTGATGTCCCAGTTGTTGGGGGACATGCTGGAATAACTATACTGCCATTGCTGTCGAAGACAAAACCCTCAGTCTGCCTCAGTGATGAAGAAGTTGCAGAGCTGACTGTTAGGATTCAGAATGCTGGAACTGAAGTTGTGGAGGCGAAGGCAGGTGCTGGGTCTGCAACATTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAGTCGTCTCTCCGTGCACTGGATGGAGACAGCGATGTCTATGAGTGTTCTTATGTGGATTCAAATCTGACTGAGCTTCCGTTCTTTGCTTCAAGAATTAAGATTGGAAAGGAAGGAGTTGAAGCTTTGATACCATCTGACCTTCAGGGTCTAACAGAGTACGAGCAAAAGGCTCTTGAAGCACTGAAGCCAGAACTGAAAGCCAGCATCGAGAAGGGTATTGCATTTGCCAACAAGCAACCAGTGGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

386

Amino Acids

40.46

Weight (kDa)

7.56

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	69 - 211	1.6e-47	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	214 - 378	6.4e-42	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47520
fragaria_vesca	FvH4_5g14890
malus_domestica	MD06G1193800.v1.1
prunus_persica	Prupe.5G194200_v2.0.a1
pyrus_communis	pycom06g17180
rosa_chinensis	RchiOBHm_Chr7g0181501
rosa_laevigata	RLG00000005188
rosa_multiflora	Rmu_sc0017276.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271950
rosa_rugosa	Rorug06G0441800 Rorug06G0441900
rosa_samantha	Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana	Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	845
AasI	GACNNNNNNGTC	1 cut(s)	941
Acc36I	ACCTGC	1 cut(s)	845
AccB7I	CCANNNNNTGG	3 cut(s)	247, 361, 719
AciI	CCGC	4 cut(s)	191, 323, 581, 1154
AcoI	YGGCCR	3 cut(s)	46, 238, 324
AcuI	CTGAAG	4 cut(s)	614, 855, 1034, 1112
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	296, 1067
AfiI	CCNNNNNNNGG	5 cut(s)	48, 247, 361, 719, 925
AflII	CTTAAG	2 cut(s)	113, 131
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	400, 969, 999, 1028, 1085
AjnI	CCWGG	2 cut(s)	354, 445
AluBI	AGCT	9 cut(s)	14, 212, 224, 377, 625, 805, 896, 982, 1031
AluI	AGCT	9 cut(s)	14, 212, 224, 377, 625, 805, 896, 982, 1031
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	3 cut(s)	64, 918, 927
Alw44I	GTGCAC	1 cut(s)	921
AlwNI	CAGNNNCTG	3 cut(s)	339, 361, 860
AoxI	GGCC	5 cut(s)	46, 127, 238, 324, 1155
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	7 cut(s)	5, 8, 11, 187, 224, 890, 893
AsuHPI	GGTGA	2 cut(s)	88, 361
BaeGI	GKGCMC	1 cut(s)	925
BalI	TGGCCA	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	1020, 1052
BbsI	GAAGAC	3 cut(s)	273, 500, 767
Bbv12I	GWGCWC	1 cut(s)	925
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	7 cut(s)	17, 20, 23, 199, 211, 877, 905
BccI	CCATC	3 cut(s)	32, 923, 1048
BciT130I	CCWGG	2 cut(s)	356, 447
BcoDI	GTCTC	3 cut(s)	64, 918, 927
BfaI	CTAG	2 cut(s)	897, 1159
BfmI	CTRYAG	1 cut(s)	891
BfrI	CTTAAG	2 cut(s)	113, 131
BfuAI	ACCTGC	1 cut(s)	845
Bme1390I	CCNGG	2 cut(s)	356, 447
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	356, 447
BmrI	ACTGGG	2 cut(s)	551, 707
BmsI	GCATC	2 cut(s)	520, 1122
BmuI	ACTGGG	2 cut(s)	551, 707
BpiI	GAAGAC	3 cut(s)	273, 500, 767
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	174, 246, 354, 437
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 247, 361, 719, 925
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	557, 713, 930, 1148
Bse3DI	GCAATG	1 cut(s)	749
Bse8I	GATNNNNATC	1 cut(s)	969
BseBI	CCWGG	2 cut(s)	356, 447
BseDI	CCNNGG	4 cut(s)	174, 246, 354, 437
BseGI	GGATG	3 cut(s)	415, 652, 934
BseJI	GATNNNNATC	1 cut(s)	969
BseLI	CCNNNNNNNGG	5 cut(s)	48, 247, 361, 719, 925
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	6 cut(s)	346, 576, 689, 786, 796, 969
BseNI	ACTGG	4 cut(s)	557, 713, 930, 1148
BseSI	GKGCMC	1 cut(s)	925
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	7 cut(s)	17, 20, 23, 199, 211, 877, 905
BseYI	CCCAGC	1 cut(s)	860
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	5 cut(s)	48, 129, 240, 326, 1157
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	925
BsiSI	CCGG	3 cut(s)	49, 372, 483
BslFI	GGGAC	3 cut(s)	253, 695, 738
BslI	CCNNNNNNNGG	5 cut(s)	48, 247, 361, 719, 925
BsmAI	GTCTC	3 cut(s)	64, 918, 927
BsmBI	CGTCTC	1 cut(s)	918
BsmFI	GGGAC	3 cut(s)	253, 695, 738
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	5 cut(s)	48, 129, 240, 326, 1157
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	2 cut(s)	328, 463
BspACI	CCGC	4 cut(s)	191, 323, 581, 1154
BspANI	GGCC	5 cut(s)	48, 129, 240, 326, 1157
BspCNI	CTCAG	6 cut(s)	345, 577, 688, 785, 795, 970
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	1 cut(s)	845
BspQI	GCTCTTC	1 cut(s)	258
BspTI	CTTAAG	2 cut(s)	113, 131
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	4 cut(s)	557, 713, 930, 1148
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	4 cut(s)	174, 246, 354, 437
BssMI	GATC	2 cut(s)	328, 463
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	246, 437
Bst2UI	CCWGG	2 cut(s)	356, 447
Bst4CI	ACNGT	2 cut(s)	571, 811
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	197
BstAFI	CTTAAG	2 cut(s)	113, 131
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	4 cut(s)	195, 242, 484, 1111
BstDEI	CTNAG	6 cut(s)	332, 585, 675, 772, 782, 978
BstF5I	GGATG	3 cut(s)	415, 652, 934
BstKTI	GATC	2 cut(s)	331, 466
BstMAI	GTCTC	3 cut(s)	64, 918, 927
BstMBI	GATC	2 cut(s)	328, 463
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 158, 866, 890, 1085
BstNI	CCWGG	2 cut(s)	356, 447
BstNSI	RCATGY	2 cut(s)	39, 731
BstSCI	CCNGG	2 cut(s)	354, 445
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	925
BstV1I	GCAGC	7 cut(s)	17, 20, 23, 199, 211, 877, 905
BstV2I	GAAGAC	3 cut(s)	273, 500, 767
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	48, 129, 240, 326, 1157
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	415, 652, 934
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	6 cut(s)	130, 337, 790, 923, 1088, 1155
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	195, 242, 484, 1111
CaiI	CAGNNNCTG	3 cut(s)	339, 361, 860
Cfr10I	RCCGGY	1 cut(s)	482
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	295, 1066
CviAII	CATG	3 cut(s)	36, 451, 728
CviQI	GTAC	2 cut(s)	295, 1066
DdeI	CTNAG	6 cut(s)	332, 585, 675, 772, 782, 978
DpnI	GATC	2 cut(s)	330, 465
DpnII	GATC	2 cut(s)	328, 463
DrdI	GACNNNNNNGTC	1 cut(s)	941
DseDI	GACNNNNNNGTC	1 cut(s)	941
EaeI	YGGCCR	3 cut(s)	46, 238, 324
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	246, 437
Eco52I	CGGCCG	1 cut(s)	324
Eco57I	CTGAAG	4 cut(s)	614, 855, 1034, 1112
EcoRII	CCWGG	2 cut(s)	354, 445
EcoT14I	CCWWGG	2 cut(s)	246, 437
ErhI	CCWWGG	2 cut(s)	246, 437
Esp3I	CGTCTC	1 cut(s)	918
FaeI	CATG	3 cut(s)	39, 454, 731
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	3 cut(s)	253, 695, 738
FatI	CATG	3 cut(s)	35, 450, 727
FauNDI	CATATG	1 cut(s)	886
FokI	GGATG	3 cut(s)	422, 659, 941
FspBI	CTAG	2 cut(s)	897, 1159
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	5 cut(s)	48, 129, 240, 326, 1157
HapII	CCGG	3 cut(s)	49, 372, 483
HgaI	GACGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	39, 454, 731
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	1029
HinfI	GANTC	6 cut(s)	57, 106, 685, 817, 908, 965
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	3 cut(s)	49, 372, 483
HphI	GGTGA	2 cut(s)	88, 361
Hpy166II	GTNNAC	3 cut(s)	96, 562, 923
Hpy188I	TCNGA	8 cut(s)	29, 156, 594, 678, 690, 822, 975, 1045
Hpy188III	TCNNGA	5 cut(s)	262, 362, 999, 1082, 1117
Hpy8I	GTNNAC	3 cut(s)	96, 562, 923
HpyAV	CCTTC	5 cut(s)	595, 844, 1013, 1058, 1114
HpyCH4III	ACNGT	2 cut(s)	571, 811
HpyCH4V	TGCA	8 cut(s)	289, 305, 342, 800, 869, 893, 923, 1130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 158, 866, 890, 1085
HpyF3I	CTNAG	6 cut(s)	332, 585, 675, 772, 782, 978
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	39, 454, 731
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	328, 463
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	221, 374
Lsp1109I	GCAGC	7 cut(s)	17, 20, 23, 199, 211, 877, 905
LweI	GCATC	2 cut(s)	520, 1122
MaeI	CTAG	2 cut(s)	897, 1159
MaeIII	GTNAC	2 cut(s)	335, 551
MalI	GATC	2 cut(s)	330, 465
MboI	GATC	2 cut(s)	328, 463
MboII	GAAGA	7 cut(s)	245, 273, 505, 691, 694, 772, 803
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	925
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	3 cut(s)	576, 692, 1002
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	66, 917
Mox20I	TGGCCA	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	5 cut(s)	114, 132, 471, 561, 1005
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	240
MspCI	CTTAAG	2 cut(s)	113, 131
MspI	CCGG	3 cut(s)	49, 372, 483
MspR9I	CCNGG	2 cut(s)	356, 447
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	829
MvaI	CCWGG	2 cut(s)	356, 447
MwoI	GCNNNNNNNGC	5 cut(s)	11, 158, 866, 890, 1085
NaeI	GCCGGC	1 cut(s)	484
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	2 cut(s)	328, 463
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	3 cut(s)	39, 454, 731
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	2 cut(s)	39, 731
PaqCI	CACCTGC	1 cut(s)	845
PciI	ACATGT	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	829
PdiI	GCCGGC	1 cut(s)	484
PfeI	GAWTC	4 cut(s)	106, 685, 817, 965
PflMI	CCANNNNNTGG	3 cut(s)	247, 361, 719
PleI	GAGTC	2 cut(s)	65, 916
PpsI	GAGTC	2 cut(s)	65, 916
PscI	ACATGT	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	354, 445
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	354, 445
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	895
PstNI	CAGNNNCTG	3 cut(s)	339, 361, 860
RsaI	GTAC	2 cut(s)	296, 1067
RsaNI	GTAC	2 cut(s)	295, 1066
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	114, 132, 471, 561, 1005
Sau3AI	GATC	2 cut(s)	328, 463
SchI	GAGTC	2 cut(s)	66, 917
ScrFI	CCNGG	2 cut(s)	356, 447
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	2 cut(s)	520, 1122
SfcI	CTRYAG	1 cut(s)	891
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	113, 131
SmoI	CTYRAG	2 cut(s)	113, 131
Sse9I	AATT	3 cut(s)	576, 692, 1002
SsiI	CCGC	4 cut(s)	191, 323, 581, 1154
SspMI	CTAG	2 cut(s)	897, 1159
StyD4I	CCNGG	2 cut(s)	354, 445
StyI	CCWWGG	2 cut(s)	246, 437
TaaI	ACNGT	2 cut(s)	571, 811
TaqI	TCGA	3 cut(s)	74, 758, 1116
TasI	AATT	3 cut(s)	576, 692, 1002
TauI	GCSGC	4 cut(s)	193, 326, 584, 1157
TfiI	GAWTC	4 cut(s)	106, 685, 817, 965
Tru1I	TTAA	5 cut(s)	114, 132, 471, 561, 1005
Tru9I	TTAA	5 cut(s)	114, 132, 471, 561, 1005
TscAI	CASTG	6 cut(s)	130, 344, 790, 930, 1095, 1155
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	7 cut(s)	5, 8, 11, 187, 224, 890, 893
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	526, 804
TspGWI	ACGGA	4 cut(s)	31, 182, 908, 975
TspRI	CASTG	6 cut(s)	130, 344, 790, 930, 1095, 1155
Van91I	CCANNNNNTGG	3 cut(s)	247, 361, 719
Vha464I	CTTAAG	2 cut(s)	113, 131
VneI	GTGCAC	1 cut(s)	921
XceI	RCATGY	2 cut(s)	39, 731
XspI	CTAG	2 cut(s)	897, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.