Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014268

Physical Location & Seq

Genomic Coordinates Reverse (-)

15805179 .. 15807364

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCGGCAACATCAGCAGCAGCTAGCTTTTCCATTGGAACCACCTGTTCCCTTGGCCACAAAGCAGTCTCATTTCCACAGTCAAAGCCTTGTTCTTTGAGGTTCAACTCCCAAAACCCTCTTAGGAGTTCTTTCAATGGCCTCAAGGCAACTACATCTCTAGCTTGCGAATCTGAGACCTCTTTCTTGGGCAAAGAAACCACCGCAGCTCTTCGAGCTTCTTTTGCTCTAAAAGCCCACAAGGGAGCCCAGGTGGTTCAGACTCCGTTTCAACCCCAGGCCTCTTATAAAGTAGCTGTTCTTGGAGCTGCTGGAGGGATAGGTCAGCCCCTGGCTCTTTTGATCAAGATGTCCCCTTTGGTCTCTGACCTGCATTTATATGATATAGCAAATGTCAAGGGTGTTGCTGCTGACCTCAGTCACTGCAACACTCCCTCCCAGGTTCTTGATTTCACCGGAGCTTCTGAGTTAGCCAAGTCATTGAAAGGTGTGGATGTGGTGGTCATACCTGCTGGTGTTCCAAGAAAGCCCGGTATGACCCGTGATGACCTCTTCAACATCAATGCCGGCATTGTGAAGAACTTGGTTGAGGCTGTGGCTGATAACTGTCCCGAGGCCTTCATCCACATTATCAGTAATCCGGTGAACTCCACAGTGCCAATTGCTGCAGAAGTTCTAAAGAAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTTACTACCTTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAATCTAAAACTGATTGATGTTGATGTCCCAGTTGTTGGTGGACATGCTGGGATAACCATTCTACCCCTTCTATCAAAGACAAAACCCTCAGTCAGCCTCACTGATGAAGAAGTTGAAAAGCTAACTGTAAGGATTCAAAATGCTGGAACCGAGGTTGTAGAGGCAAAGGCTGGTGCTGGGTCTGCAACATTGTCAATGGCATATGCAGCAGCTAGATTCGTCGAGTCATCTCTGCGTGCACTGGATGGAGATGGGGATGTCTATGAGTGCTCTTATGTAGAGTCTGATCTGACCGAGCTTCCTTTCTTTGCATCAAGGGTTAAGCTTGGAAGGAAAGGGGTTGAAGCTTTGATACCATCTGACCTCCAAGGTTTGACAGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAATTGAAAGCCAGCATTGAGAAAGGTATTGCATTTGCCAACAAGCAAGCAGTGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

415

Amino Acids

43.49

Weight (kDa)

8.57

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47520
fragaria_vesca	FvH4_5g14890
malus_domestica	MD06G1193800.v1.1
prunus_persica	Prupe.5G194200_v2.0.a1
pyrus_communis	pycom06g17180
rosa_chinensis	RchiOBHm_Chr7g0181501
rosa_laevigata	RLG00000005188
rosa_multiflora	Rmu_sc0017276.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271950
rosa_rugosa	Rorug06G0441800 Rorug06G0441900
rosa_samantha	Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana	Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	288, 696
Acc36I	ACCTGC	2 cut(s)	378, 517
AccB7I	CCANNNNNTGG	1 cut(s)	803
AciI	CCGC	2 cut(s)	5, 204
AcoI	YGGCCR	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	803
AflII	CTTAAG	1 cut(s)	1175
AgsI	TTSAA	9 cut(s)	106, 136, 272, 484, 556, 884, 905, 1112, 1189
AjnI	CCWGG	4 cut(s)	249, 276, 330, 438
Alw21I	GWGCWC	2 cut(s)	1009, 1040
Alw26I	GTCTC	3 cut(s)	73, 170, 367
Alw44I	GTGCAC	1 cut(s)	1005
AlwNI	CAGNNNCTG	3 cut(s)	331, 423, 1238
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	4 cut(s)	55, 139, 279, 615
ApaLI	GTGCAC	1 cut(s)	1005
ApeKI	GCWGC	8 cut(s)	17, 20, 206, 308, 407, 665, 974, 977
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	445, 655
AsuNHI	GCTAGC	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	1009
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	250
BarI	GAAGNNNNNNTAC	2 cut(s)	1104, 1136
Bbv12I	GWGCWC	2 cut(s)	1009, 1040
BbvI	GCAGC	8 cut(s)	29, 32, 218, 295, 394, 652, 986, 989
BccI	CCATC	3 cut(s)	1007, 1013, 1132
BciT130I	CCWGG	4 cut(s)	251, 278, 332, 440
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	73, 170, 367
BfaI	CTAG	3 cut(s)	24, 161, 981
BfmI	CTRYAG	1 cut(s)	666
BfrI	CTTAAG	1 cut(s)	1175
BfuAI	ACCTGC	2 cut(s)	378, 517
BisI	GCNGC	9 cut(s)	6, 18, 21, 207, 309, 408, 666, 975, 978
BlsI	GCNGC	9 cut(s)	7, 19, 22, 208, 310, 409, 667, 976, 979
Bme1390I	CCNGG	5 cut(s)	251, 278, 332, 440, 531
BmeT110I	CYCGRG	1 cut(s)	611
BmiI	GGNNCC	3 cut(s)	40, 247, 916
BmrFI	CCNGG	5 cut(s)	251, 278, 332, 440, 531
BmrI	ACTGGG	1 cut(s)	791
BmsI	GCATC	1 cut(s)	1088
BmtI	GCTAGC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	791
BoxI	GACNNNNGTC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	531
BsaI	GGTCTC	2 cut(s)	170, 367
BsaJI	CCNNGG	9 cut(s)	52, 249, 276, 330, 438, 612, 726, 918, 1135
BsaWI	WCCGGW	2 cut(s)	455, 640
BsaXI	ACNNNNNCTCC	4 cut(s)	237, 267, 419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	797, 1014
BseBI	CCWGG	4 cut(s)	251, 278, 332, 440
BseDI	CCNNGG	9 cut(s)	52, 249, 276, 330, 438, 612, 726, 918, 1135
BseGI	GGATG	5 cut(s)	499, 621, 736, 1018, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMII	CTCAG	5 cut(s)	165, 430, 456, 773, 870
BseNI	ACTGG	2 cut(s)	797, 1014
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	8 cut(s)	29, 32, 218, 295, 394, 652, 986, 989
BseYI	CCCAGC	2 cut(s)	815, 944
BshFI	GGCC	4 cut(s)	57, 141, 281, 617
BsiHKAI	GWGCWC	2 cut(s)	1009, 1040
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	4 cut(s)	456, 531, 567, 641
BslFI	GGGAC	3 cut(s)	337, 594, 779
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	3 cut(s)	73, 170, 367
BsmFI	GGGAC	3 cut(s)	337, 594, 779
BsnI	GGCC	4 cut(s)	57, 141, 281, 617
Bso31I	GGTCTC	2 cut(s)	170, 367
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	250, 1009, 1040
Bsp143I	GATC	2 cut(s)	342, 1054
BspACI	CCGC	2 cut(s)	5, 204
BspANI	GGCC	4 cut(s)	57, 141, 281, 617
BspCNI	CTCAG	5 cut(s)	166, 429, 457, 772, 869
BspLI	GGNNCC	3 cut(s)	40, 247, 916
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	378, 517
BspOI	GCTAGC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	1175
BspTNI	GGTCTC	2 cut(s)	170, 367
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	797, 1014
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	9 cut(s)	52, 249, 276, 330, 438, 612, 726, 918, 1135
BssMI	GATC	2 cut(s)	342, 1054
BssT1I	CCWWGG	3 cut(s)	52, 726, 1135
Bst2UI	CCWGG	4 cut(s)	251, 278, 332, 440
Bst4CI	ACNGT	4 cut(s)	81, 608, 655, 895
Bst6I	CTCTTC	2 cut(s)	216, 557
BstAFI	CTTAAG	1 cut(s)	1175
BstAPI	GCANNNNNTGC	1 cut(s)	1238
BstC8I	GCNNGC	6 cut(s)	25, 166, 568, 1005, 1195, 1230
BstDEI	CTNAG	7 cut(s)	122, 174, 416, 465, 759, 856, 1242
BstF5I	GGATG	5 cut(s)	499, 621, 736, 1018, 1030
BstKTI	GATC	2 cut(s)	345, 1057
BstMAI	GTCTC	3 cut(s)	73, 170, 367
BstMBI	GATC	2 cut(s)	342, 1054
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 215, 224, 233, 950, 974, 1169, 1238
BstNI	CCWGG	4 cut(s)	251, 278, 332, 440
BstNSI	RCATGY	1 cut(s)	815
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	5 cut(s)	249, 276, 330, 438, 529
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	1009
BstV1I	GCAGC	8 cut(s)	29, 32, 218, 295, 394, 652, 986, 989
BsuRI	GGCC	4 cut(s)	57, 141, 281, 617
BtsCI	GGATG	5 cut(s)	499, 621, 736, 1018, 1030
BtsI	GCAGTG	2 cut(s)	421, 1239
BtsIMutI	CAGTG	5 cut(s)	421, 660, 867, 1007, 1239
BveI	ACCTGC	2 cut(s)	378, 517
Cac8I	GCNNGC	6 cut(s)	25, 166, 568, 1005, 1195, 1230
CaiI	CAGNNNCTG	3 cut(s)	331, 423, 1238
Cfr10I	RCCGGY	1 cut(s)	566
CviAII	CATG	1 cut(s)	812
DdeI	CTNAG	7 cut(s)	122, 174, 416, 465, 759, 856, 1242
DpnI	GATC	2 cut(s)	344, 1056
DpnII	GATC	2 cut(s)	342, 1054
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	216, 557
EarI	CTCTTC	2 cut(s)	216, 557
Eco130I	CCWWGG	3 cut(s)	52, 726, 1135
Eco147I	AGGCCT	2 cut(s)	281, 617
Eco24I	GRGCYC	1 cut(s)	250
Eco31I	GGTCTC	2 cut(s)	170, 367
Eco88I	CYCGRG	1 cut(s)	611
EcoRII	CCWGG	4 cut(s)	249, 276, 330, 438
EcoT14I	CCWWGG	3 cut(s)	52, 726, 1135
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	3 cut(s)	52, 726, 1135
FaeI	CATG	1 cut(s)	815
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	3 cut(s)	337, 594, 779
FatI	CATG	1 cut(s)	811
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	9 cut(s)	6, 18, 21, 207, 309, 408, 666, 975, 978
FokI	GGATG	5 cut(s)	506, 608, 743, 1025, 1037
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	9 cut(s)	6, 18, 21, 207, 309, 408, 666, 975, 978
FspBI	CTAG	3 cut(s)	24, 161, 981
GluI	GCNGC	9 cut(s)	6, 18, 21, 207, 309, 408, 666, 975, 978
GsaI	CCCAGC	2 cut(s)	819, 948
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	57, 141, 281, 617
HapII	CCGG	4 cut(s)	456, 531, 567, 641
Hin1II	CATG	1 cut(s)	815
HindIII	AAGCTT	2 cut(s)	1091, 1113
HinfI	GANTC	7 cut(s)	170, 262, 769, 901, 984, 992, 1049
HpaII	CCGG	4 cut(s)	456, 531, 567, 641
HphI	GGTGA	2 cut(s)	445, 655
Hpy166II	GTNNAC	3 cut(s)	646, 809, 1007
Hpy188I	TCNGA	8 cut(s)	175, 261, 367, 466, 762, 1054, 1059, 1129
Hpy188III	TCNNGA	3 cut(s)	346, 446, 611
Hpy8I	GTNNAC	3 cut(s)	646, 809, 1007
Hpy99I	CGWCG	1 cut(s)	992
HpyAV	CCTTC	5 cut(s)	628, 679, 845, 1092, 1153
HpyCH4III	ACNGT	4 cut(s)	81, 608, 655, 895
HpyCH4V	TGCA	8 cut(s)	373, 426, 668, 953, 974, 1007, 1079, 1214
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 215, 224, 233, 950, 974, 1169, 1238
HpyF3I	CTNAG	7 cut(s)	122, 174, 416, 465, 759, 856, 1242
Hsp92II	CATG	1 cut(s)	815
KroI	GCCGGC	1 cut(s)	566
KroNI	GCCGGC	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	342, 1054
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	245, 305, 458
Lsp1109I	GCAGC	8 cut(s)	29, 32, 218, 295, 394, 652, 986, 989
LweI	GCATC	1 cut(s)	1088
MaeI	CTAG	3 cut(s)	24, 161, 981
MaeIII	GTNAC	3 cut(s)	419, 718, 1234
MalI	GATC	2 cut(s)	344, 1056
MboI	GATC	2 cut(s)	342, 1054
MboII	GAAGA	7 cut(s)	203, 544, 589, 694, 775, 778, 887
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	3 cut(s)	250, 1009, 1040
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	2 cut(s)	660, 1184
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	3 cut(s)	256, 1001, 1058
Mox20I	TGGCCA	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	1089, 1176
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	1175
MspI	CCGG	4 cut(s)	456, 531, 567, 641
MspR9I	CCNGG	5 cut(s)	251, 278, 332, 440, 531
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	4 cut(s)	251, 278, 332, 440
MwoI	GCNNNNNNNGC	8 cut(s)	14, 215, 224, 233, 950, 974, 1169, 1238
NaeI	GCCGGC	1 cut(s)	568
NciI	CCSGG	1 cut(s)	531
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	2 cut(s)	342, 1054
NgoMIV	GCCGGC	1 cut(s)	566
NheI	GCTAGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	815
NlaIV	GGNNCC	3 cut(s)	40, 247, 916
NmuCI	GTSAC	2 cut(s)	419, 1234
NspI	RCATGY	1 cut(s)	815
PceI	AGGCCT	2 cut(s)	281, 617
PciSI	GCTCTTC	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	170, 769, 901, 984
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	9 cut(s)	7, 19, 22, 208, 310, 409, 667, 976, 979
PleI	GAGTC	3 cut(s)	256, 1000, 1057
PpsI	GAGTC	3 cut(s)	256, 1000, 1057
PshAI	GACNNNNGTC	1 cut(s)	417
PsiI	TTATAA	2 cut(s)	288, 696
Psp6I	CCWGG	4 cut(s)	249, 276, 330, 438
PspFI	CCCAGC	2 cut(s)	815, 944
PspGI	CCWGG	4 cut(s)	249, 276, 330, 438
PspN4I	GGNNCC	3 cut(s)	40, 247, 916
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	3 cut(s)	331, 423, 1238
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	1089, 1176
SatI	GCNGC	9 cut(s)	6, 18, 21, 207, 309, 408, 666, 975, 978
Sau3AI	GATC	2 cut(s)	342, 1054
SchI	GAGTC	3 cut(s)	256, 1001, 1058
ScrFI	CCNGG	5 cut(s)	251, 278, 332, 440, 531
SduI	GDGCHC	3 cut(s)	250, 1009, 1040
SfaNI	GCATC	1 cut(s)	1088
SfcI	CTRYAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	143, 1175
SmoI	CTYRAG	2 cut(s)	143, 1175
Sse9I	AATT	2 cut(s)	660, 1184
SseBI	AGGCCT	2 cut(s)	281, 617
SsiI	CCGC	2 cut(s)	5, 204
SspMI	CTAG	3 cut(s)	24, 161, 981
StuI	AGGCCT	2 cut(s)	281, 617
StyD4I	CCNGG	5 cut(s)	249, 276, 330, 438, 529
StyI	CCWWGG	3 cut(s)	52, 726, 1135
TaaI	ACNGT	4 cut(s)	81, 608, 655, 895
TaqI	TCGA	2 cut(s)	214, 990
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	2 cut(s)	660, 1184
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	170, 769, 901, 984
Tru1I	TTAA	2 cut(s)	1089, 1176
Tru9I	TTAA	2 cut(s)	1089, 1176
TscAI	CASTG	5 cut(s)	428, 660, 874, 1014, 1239
TseFI	GTSAC	2 cut(s)	419, 1234
TseI	GCWGC	8 cut(s)	17, 20, 206, 308, 407, 665, 974, 977
Tsp45I	GTSAC	2 cut(s)	419, 1234
TspDTI	ATGAA	2 cut(s)	610, 888
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	5 cut(s)	428, 660, 874, 1014, 1239
Van91I	CCANNNNNTGG	1 cut(s)	803
Vha464I	CTTAAG	1 cut(s)	1175
VneI	GTGCAC	1 cut(s)	1005
XceI	RCATGY	1 cut(s)	815
XspI	CTAG	3 cut(s)	24, 161, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.