Rh7DG043500

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
3303024 .. 3305295
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG043500.1

Sequence Viewer

Length: 1230 bp
ATGGCAGCAGCAGCAGCTACGTTTTCCGTCGGAACCACATGTTCCGTTGGCCGGAAAGGAGTCTCAACCCCACAATCGAAGCCTTGTGCTTTGAGGTTCACCGCCCAGAATCCTCTTAAGAGTTTCAGTGGCCTTAAGGCAACTAGTGGATCGTTCGCTTGCGAATCTGAGCCATCATTCTTTGGCAAGGAAAGCACTGCAACTATTCGAGCTTCTTATGCTCTGAAAGCCCAGAAGGAAGCCTCGGTGGTTCAGCAGCCGCAGGCGTCTTACAAAGTAGCTGTTCTTGGAGCTGCTGGTGGGATTGGCCAGCCCTTGGCTCTTCTCATCAAGATGTCCCCTTTGGTGTCTTCCCTGCATTTGTACGATATTGCAAATGTCAAGGGTGTTGCGGCCGATCTCAGTCACTGCAACACTCCCTCCCAGGTTCTGGATTTCACGGGAGCTGATGAGTTGGCTCAATCTTTGAAAGGTGTGGATGTGGTTGTCATTCCTGCTGGAGTTCCAAGGAAGCCTGGCATGACCCGTGATGATCTCTTTAACATCAATGCCGGCATTGTGAAGACCTTGATTGAGGCTGTTGCTGATAACTGCCCAGATGCTTTCATTCACATCATCAGTAACCCAGTTAACTCTACTGTGCCTATTGCAGCTGAGGTTCTGAAGCAGAAGGGTGTTTATAACCCAAAGAAGCTCTTTGGTGTTTCTACTTTGGATGTTGTGAGGGCTAACACATTTGTTGCTCAGAAGAAGAATCTGAAATTGATTGATGTTGATGTCCCAGTTGTTGGGGGACATGCTGGAATAACTATACTGCCATTGCTGTCAAAGACAAAACCCTCAGTCAGCCTCAGTGATGAAGAAGTTGCAGAGCTGACTGTTAGGATTCAGAATGCTGGAACTGAAGTTGTGGAGGCGAAGGCAGGTGCTGGGTCTGCAACATTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAGTCGTCTCTCCGTGCACTGGATGGAGACAGCGATGTCTATGAGTGCTCTTATGTGGATTCAAGTCTGACTGAGCTTCCGTTCTTTGCTTCAAGAATTAAGATTGGAAAGGAAGGAGTTGAAGCTTTGATACCATCTGACCTTCAGGGTCTAACAGAGTACGAGCAAAAGGCTCTTGAAGCACTGAAGCCAGAACTGAAAGCCAGCATCGAGAAGGGTATTGCATTTGCCAACAAGCAACCAGTGGCGGCCTAG

Protein Analysis

409

Amino Acids

42.75

Weight (kDa)

6.91

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 92 - 234 1.9e-47 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 237 - 401 4.7e-42 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47520
fragaria_vesca FvH4_5g14890
malus_domestica MD06G1193800.v1.1
prunus_persica Prupe.5G194200_v2.0.a1
pyrus_communis pycom06g17180
rosa_chinensis RchiOBHm_Chr7g0181501
rosa_laevigata RLG00000005188
rosa_multiflora Rmu_sc0017276.1_g000002
rosa_roxburghii Rroxscaffold_3G00271950
rosa_rugosa Rorug06G0441800 Rorug06G0441900
rosa_samantha Rh7AG043700 Rh7BG043000 Rh7CG044800 Rh7DG043500
rosa_wichuraiana Rw2G025070 Rw7G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AarI CACCTGC 1 cut(s) 914
AasI GACNNNNNNGTC 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 914
AccB7I CCANNNNNTGG 3 cut(s) 316, 430, 788
AciI CCGC 4 cut(s) 102, 260, 392, 1223
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 3 cut(s) 49, 307, 393
AcuI CTGAAG 4 cut(s) 683, 924, 1103, 1181
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 2 cut(s) 365, 1136
AfiI CCNNNNNNNGG 5 cut(s) 51, 316, 430, 788, 994
AflII CTTAAG 2 cut(s) 116, 134
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 5 cut(s) 469, 1038, 1068, 1097, 1154
AhlI ACTAGT 1 cut(s) 143
AjnI CCWGG 2 cut(s) 423, 514
Alw21I GWGCWC 2 cut(s) 994, 1025
Alw26I GTCTC 3 cut(s) 67, 987, 996
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 1 cut(s) 157
AlwNI CAGNNNCTG 3 cut(s) 408, 430, 929
AoxI GGCC 5 cut(s) 49, 130, 307, 393, 1224
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 9 cut(s) 5, 8, 11, 14, 256, 293, 650, 959, 962
AsuHPI GGTGA 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 994
BalI TGGCCA 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
BbsI GAAGAC 2 cut(s) 342, 569
Bbv12I GWGCWC 2 cut(s) 994, 1025
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 9 cut(s) 17, 20, 23, 26, 268, 280, 662, 946, 974
BccI CCATC 3 cut(s) 181, 992, 1117
BciT130I CCWGG 2 cut(s) 425, 516
BcoDI GTCTC 3 cut(s) 67, 987, 996
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 3 cut(s) 144, 966, 1228
BfmI CTRYAG 1 cut(s) 960
BfrI CTTAAG 2 cut(s) 116, 134
BfuAI ACCTGC 1 cut(s) 914
Bme1390I CCNGG 2 cut(s) 425, 516
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 2 cut(s) 425, 516
BmrI ACTGGG 2 cut(s) 620, 776
BmsI GCATC 2 cut(s) 589, 1191
BmuI ACTGGG 2 cut(s) 620, 776
BpiI GAAGAC 2 cut(s) 342, 569
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 654
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 243, 315, 423, 506
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 316, 430, 788, 994
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 4 cut(s) 626, 782, 999, 1217
Bse3DI GCAATG 1 cut(s) 818
BseBI CCWGG 2 cut(s) 425, 516
BseDI CCNNGG 4 cut(s) 243, 315, 423, 506
BseGI GGATG 3 cut(s) 484, 721, 1003
BseLI CCNNNNNNNGG 5 cut(s) 51, 316, 430, 788, 994
BseMI GCAATG 1 cut(s) 818
BseMII CTCAG 7 cut(s) 159, 415, 645, 758, 855, 865, 1038
BseNI ACTGG 4 cut(s) 626, 782, 999, 1217
BseSI GKGCMC 1 cut(s) 994
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 9 cut(s) 17, 20, 23, 26, 268, 280, 662, 946, 974
BseYI CCCAGC 1 cut(s) 929
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 5 cut(s) 51, 132, 309, 395, 1226
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 994, 1025
BsiSI CCGG 2 cut(s) 52, 552
BslFI GGGAC 3 cut(s) 322, 764, 807
BslI CCNNNNNNNGG 5 cut(s) 51, 316, 430, 788, 994
BsmAI GTCTC 3 cut(s) 67, 987, 996
BsmBI CGTCTC 1 cut(s) 987
BsmFI GGGAC 3 cut(s) 322, 764, 807
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 5 cut(s) 51, 132, 309, 395, 1226
Bsp1286I GDGCHC 2 cut(s) 994, 1025
Bsp143I GATC 3 cut(s) 149, 397, 532
BspACI CCGC 4 cut(s) 102, 260, 392, 1223
BspANI GGCC 5 cut(s) 51, 132, 309, 395, 1226
BspCNI CTCAG 7 cut(s) 160, 414, 646, 757, 854, 864, 1039
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 327
BspTI CTTAAG 2 cut(s) 116, 134
BsrDI GCAATG 1 cut(s) 818
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 4 cut(s) 626, 782, 999, 1217
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 4 cut(s) 243, 315, 423, 506
BssMI GATC 3 cut(s) 149, 397, 532
BssNI GRCGYC 1 cut(s) 266
BssT1I CCWWGG 2 cut(s) 315, 506
Bst2UI CCWGG 2 cut(s) 425, 516
Bst4CI ACNGT 2 cut(s) 640, 880
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 266
BstAFI CTTAAG 2 cut(s) 116, 134
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 5 cut(s) 160, 264, 311, 553, 1180
BstDEI CTNAG 7 cut(s) 168, 401, 654, 744, 841, 851, 1047
BstF5I GGATG 3 cut(s) 484, 721, 1003
BstKTI GATC 3 cut(s) 152, 400, 535
BstMAI GTCTC 3 cut(s) 67, 987, 996
BstMBI GATC 3 cut(s) 149, 397, 532
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 8 cut(s) 11, 14, 192, 218, 227, 935, 959, 1154
BstNI CCWGG 2 cut(s) 425, 516
BstNSI RCATGY 2 cut(s) 42, 800
BstSCI CCNGG 2 cut(s) 423, 514
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 9 cut(s) 17, 20, 23, 26, 268, 280, 662, 946, 974
BstV2I GAAGAC 2 cut(s) 342, 569
BstZI CGGCCG 1 cut(s) 393
BsuRI GGCC 5 cut(s) 51, 132, 309, 395, 1226
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 3 cut(s) 484, 721, 1003
BtsI GCAGTG 2 cut(s) 195, 406
BtsIMutI CAGTG 7 cut(s) 133, 195, 406, 859, 992, 1157, 1224
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 5 cut(s) 160, 264, 311, 553, 1180
CaiI CAGNNNCTG 3 cut(s) 408, 430, 929
Cfr10I RCCGGY 1 cut(s) 551
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 364, 1135
CviAII CATG 3 cut(s) 39, 520, 797
CviQI GTAC 2 cut(s) 364, 1135
DdeI CTNAG 7 cut(s) 168, 401, 654, 744, 841, 851, 1047
DpnI GATC 3 cut(s) 151, 399, 534
DpnII GATC 3 cut(s) 149, 397, 532
DrdI GACNNNNNNGTC 1 cut(s) 1010
DseDI GACNNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 3 cut(s) 49, 307, 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 315, 506
Eco52I CGGCCG 1 cut(s) 393
Eco57I CTGAAG 4 cut(s) 683, 924, 1103, 1181
EcoRII CCWGG 2 cut(s) 423, 514
EcoT14I CCWWGG 2 cut(s) 315, 506
ErhI CCWWGG 2 cut(s) 315, 506
Esp3I CGTCTC 1 cut(s) 987
FaeI CATG 3 cut(s) 42, 523, 800
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FaqI GGGAC 3 cut(s) 322, 764, 807
FatI CATG 3 cut(s) 38, 519, 796
FauNDI CATATG 1 cut(s) 955
FokI GGATG 3 cut(s) 491, 728, 1010
FspBI CTAG 3 cut(s) 144, 966, 1228
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 5 cut(s) 51, 132, 309, 395, 1226
HapII CCGG 2 cut(s) 52, 552
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 3 cut(s) 42, 523, 800
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 1098
HinfI GANTC 7 cut(s) 60, 109, 164, 754, 886, 977, 1034
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 2 cut(s) 52, 552
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 99, 631, 992
Hpy188I TCNGA 9 cut(s) 32, 169, 225, 663, 747, 759, 891, 1044, 1114
Hpy188III TCNNGA 5 cut(s) 331, 431, 1068, 1151, 1186
Hpy8I GTNNAC 3 cut(s) 99, 631, 992
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 6 cut(s) 229, 664, 913, 1082, 1127, 1183
HpyCH4III ACNGT 2 cut(s) 640, 880
HpyCH4IV ACGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 14, 192, 218, 227, 935, 959, 1154
HpyF3I CTNAG 7 cut(s) 168, 401, 654, 744, 841, 851, 1047
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 3 cut(s) 42, 523, 800
KroI GCCGGC 1 cut(s) 551
KroNI GCCGGC 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 3 cut(s) 149, 397, 532
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 290, 443
Lsp1109I GCAGC 9 cut(s) 17, 20, 23, 26, 268, 280, 662, 946, 974
LweI GCATC 2 cut(s) 589, 1191
MaeI CTAG 3 cut(s) 144, 966, 1228
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 404, 620
MalI GATC 3 cut(s) 151, 399, 534
MboI GATC 3 cut(s) 149, 397, 532
MboII GAAGA 6 cut(s) 314, 342, 574, 760, 763, 872
MhlI GDGCHC 2 cut(s) 994, 1025
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 2 cut(s) 761, 1071
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 2 cut(s) 69, 986
MmeI TCCRAC 1 cut(s) 10
Mox20I TGGCCA 1 cut(s) 309
MroNI GCCGGC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 309
MseI TTAA 5 cut(s) 117, 135, 540, 630, 1074
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 653
MspCI CTTAAG 2 cut(s) 116, 134
MspI CCGG 2 cut(s) 52, 552
MspR9I CCNGG 2 cut(s) 425, 516
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 2 cut(s) 425, 516
MwoI GCNNNNNNNGC 8 cut(s) 11, 14, 192, 218, 227, 935, 959, 1154
NaeI GCCGGC 1 cut(s) 553
NdeI CATATG 1 cut(s) 955
NdeII GATC 3 cut(s) 149, 397, 532
NgoMIV GCCGGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 42, 523, 800
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 2 cut(s) 42, 800
PaqCI CACCTGC 1 cut(s) 914
PciI ACATGT 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 327
PctI GAATGC 1 cut(s) 898
PdiI GCCGGC 1 cut(s) 553
PfeI GAWTC 5 cut(s) 109, 164, 754, 886, 1034
PflMI CCANNNNNTGG 3 cut(s) 316, 430, 788
PleI GAGTC 2 cut(s) 68, 985
PpsI GAGTC 2 cut(s) 68, 985
PscI ACATGT 1 cut(s) 38
PsiI TTATAA 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 423, 514
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 423, 514
PspN4I GGNNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 964
PstNI CAGNNNCTG 3 cut(s) 408, 430, 929
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 365, 1136
RsaNI GTAC 2 cut(s) 364, 1135
RseI CAYNNNNRTG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 5 cut(s) 117, 135, 540, 630, 1074
Sau3AI GATC 3 cut(s) 149, 397, 532
SchI GAGTC 2 cut(s) 69, 986
ScrFI CCNGG 2 cut(s) 425, 516
SduI GDGCHC 2 cut(s) 994, 1025
SfaNI GCATC 2 cut(s) 589, 1191
SfcI CTRYAG 1 cut(s) 960
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 116, 134
SmoI CTYRAG 2 cut(s) 116, 134
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 2 cut(s) 761, 1071
SsiI CCGC 4 cut(s) 102, 260, 392, 1223
SspMI CTAG 3 cut(s) 144, 966, 1228
StyD4I CCNGG 2 cut(s) 423, 514
StyI CCWWGG 2 cut(s) 315, 506
TaaI ACNGT 2 cut(s) 640, 880
TaiI ACGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 77, 208, 1185
TasI AATT 2 cut(s) 761, 1071
TauI GCSGC 3 cut(s) 262, 395, 1226
TfiI GAWTC 5 cut(s) 109, 164, 754, 886, 1034
Tru1I TTAA 5 cut(s) 117, 135, 540, 630, 1074
Tru9I TTAA 5 cut(s) 117, 135, 540, 630, 1074
TscAI CASTG 7 cut(s) 133, 202, 413, 859, 999, 1164, 1224
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 9 cut(s) 5, 8, 11, 14, 256, 293, 650, 959, 962
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 595, 873
TspGWI ACGGA 4 cut(s) 16, 34, 977, 1044
TspRI CASTG 7 cut(s) 133, 202, 413, 859, 999, 1164, 1224
Van91I CCANNNNNTGG 3 cut(s) 316, 430, 788
Vha464I CTTAAG 2 cut(s) 116, 134
VneI GTGCAC 1 cut(s) 990
XceI RCATGY 2 cut(s) 42, 800
XspI CTAG 3 cut(s) 144, 966, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.