AT3G47690

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013366
Physical Location & Seq
Forward (+)
17581096 .. 17583586
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47690.1

Sequence Viewer

Length: 831 bp
ATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTCGGAAGAAACGAGATTCTGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCTGGTGCTGTGCAATGTCAGATGCTTGATATGACATTTCCAGGAGTTGTGCCAATGCACAAGGTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTACAAGGTCTTGCAAGATGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCGGCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACGTTTCTGTGATTCCATTAATGGTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGAGGAGTGTGAAGGGATCTAATAAGATTCCAAAGTCACTGCAAACAAACAATAACCATCCTCCACCCAATTCCAGTTCAGTTGGTCTTAGCAAAGCATCAGGGCCCAAGTCAGCAAAAGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATCTCAAGATCTCTACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGGATGTAGAGATACTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGAAGAAGATACTGTATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACCTAAACCAGTCCCTAGGAGTTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAAGAAGAAAAGACTCAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000922 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006355 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009629 GO:0009630 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010005 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030496 GO:0030863 GO:0030981 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055028 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

276

Amino Acids

31.08

Weight (kDa)

5.08

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 16 - 112 5e-09 Calponin homology (CH) domain
EB1 PF03271 198 - 236 1.3e-16 EB1-like C-terminal motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47690
fragaria_vesca FvH4_5g15190 FvH4_5g15190
malus_domestica MD00G1186200.v1.1 MD06G1191400.v1.1 MD14G1197800.v1.1
prunus_persica Prupe.5G189900_v2.0.a1 Prupe.5G189900_v2.0.a1
pyrus_communis pycom14g16430
rosa_chinensis RchiOBHm_Chr7g0180971
rosa_laevigata RLG00000005220
rosa_multiflora Rmu_sc0004056.1_g000004
rosa_roxburghii Rroxscaffold_3G00272370
rosa_rugosa Rorug06G0438000 Rorug06G0438100
rosa_samantha Rh7BG038800 Rh7DG039000
rosa_wichuraiana Rw7G003240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AclI AACGTT 1 cut(s) 334
AclWI GGATC 2 cut(s) 436, 576
AcoI YGGCCR 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 558, 807
AfaI GTAC 2 cut(s) 203, 749
AfiI CCNNNNNNNGG 2 cut(s) 301, 627
AgsI TTSAA 2 cut(s) 244, 773
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 6 cut(s) 250, 536, 562, 625, 661, 785
AluI AGCT 6 cut(s) 250, 536, 562, 625, 661, 785
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 2 cut(s) 436, 576
AoxI GGCC 3 cut(s) 292, 296, 515
ApaI GGGCCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 110, 533
AseI ATTAAT 2 cut(s) 69, 351
Asp700I GAANNNNTTC 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 763
AspS9I GGNCC 2 cut(s) 515, 516
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 763
BaeGI GKGCMC 1 cut(s) 519
BanII GRGCYC 2 cut(s) 519, 564
BauI CACGAG 1 cut(s) 563
BbsI GAAGAC 2 cut(s) 71, 741
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 97, 545
BccI CCATC 2 cut(s) 16, 477
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 2 cut(s) 662, 764
BglII AGATCT 1 cut(s) 576
BisI GCNGC 2 cut(s) 111, 534
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 2 cut(s) 112, 535
Bme1390I CCNGG 2 cut(s) 156, 629
BmgT120I GGNCC 2 cut(s) 515, 516
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 2 cut(s) 156, 629
BmsI GCATC 5 cut(s) 122, 126, 178, 518, 703
BpiI GAAGAC 2 cut(s) 71, 741
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 557, 726, 807
BpuMI CCSGG 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 763
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 627
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 5 cut(s) 306, 383, 486, 757, 810
Bse3DI GCAATG 2 cut(s) 134, 329
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 763
BseGI GGATG 2 cut(s) 469, 637
BseLI CCNNNNNNNGG 2 cut(s) 301, 627
BseMI GCAATG 2 cut(s) 134, 329
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 5 cut(s) 306, 383, 486, 757, 810
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 2 cut(s) 97, 545
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 294, 298, 517
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 2 cut(s) 295, 628
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 301, 627
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 3 cut(s) 294, 298, 517
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 519, 564
Bsp143I GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
BspANI GGCC 3 cut(s) 294, 298, 517
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 436, 576
BsrDI GCAATG 2 cut(s) 134, 329
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 5 cut(s) 306, 383, 486, 757, 810
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 763
BssMI GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
BssSI CACGAG 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 702
Bst6I CTCTTC 1 cut(s) 99
BstAPI GCANNNNNTGC 2 cut(s) 119, 713
BstC8I GCNNGC 2 cut(s) 296, 546
BstDEI CTNAG 2 cut(s) 500, 657
BstF5I GGATG 2 cut(s) 469, 637
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 7 cut(s) 76, 398, 431, 571, 579, 589, 670
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
BstMWI GCNNNNNNNGC 3 cut(s) 119, 533, 713
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 154, 627
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 97, 545
BstV2I GAAGAC 2 cut(s) 71, 741
BstX2I RGATCY 3 cut(s) 428, 568, 576
BstYI RGATCY 3 cut(s) 428, 568, 576
BsuRI GGCC 3 cut(s) 294, 298, 517
BtsCI GGATG 2 cut(s) 469, 637
BtsI GCAGTG 2 cut(s) 449, 693
BtsIMutI CAGTG 4 cut(s) 299, 390, 449, 693
Cac8I GCNNGC 2 cut(s) 296, 546
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 515, 516
CseI GACGC 2 cut(s) 88, 746
Csp6I GTAC 2 cut(s) 202, 748
CviQI GTAC 2 cut(s) 202, 748
DdeI CTNAG 2 cut(s) 500, 657
DpnI GATC 7 cut(s) 75, 397, 430, 570, 578, 588, 669
DpnII GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 2 cut(s) 519, 564
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 558, 807
EcoICRI GAGCTC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 2 cut(s) 519, 564
ErhI CCWWGG 1 cut(s) 763
FaiI YATR 6 cut(s) 34, 146, 209, 365, 378, 705
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 111, 534
FokI GGATG 2 cut(s) 456, 644
FriOI GRGCYC 2 cut(s) 519, 564
FseI GGCCGGCC 1 cut(s) 298
Fsp4HI GCNGC 2 cut(s) 111, 534
FspBI CTAG 2 cut(s) 662, 764
GluI GCNGC 2 cut(s) 111, 534
HaeIII GGCC 3 cut(s) 294, 298, 517
HapII CCGG 2 cut(s) 295, 628
HgaI GACGC 2 cut(s) 88, 746
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 55, 344, 439, 722, 820
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 295, 628
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 17, 44, 60, 135, 675
Hpy188III TCNNGA 4 cut(s) 399, 574, 656, 743
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 3 cut(s) 10, 44, 104
HpyAV CCTTC 3 cut(s) 418, 550, 782
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4IV ACGT 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 533, 713
HpyF3I CTNAG 2 cut(s) 500, 657
HpySE526I ACGT 1 cut(s) 334
KroI GCCGGC 1 cut(s) 294
KroNI GCCGGC 1 cut(s) 296
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
LmnI GCTCC 3 cut(s) 388, 559, 630
Lsp1109I GCAGC 2 cut(s) 97, 545
LweI GCATC 5 cut(s) 122, 126, 178, 518, 703
MaeI CTAG 2 cut(s) 662, 764
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 447
MalI GATC 7 cut(s) 75, 397, 430, 570, 578, 588, 669
MboI GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
MflI RGATCY 3 cut(s) 428, 568, 576
MhlI GDGCHC 2 cut(s) 519, 564
MluCI AATT 3 cut(s) 255, 273, 481
MlyI GAGTC 1 cut(s) 814
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 95, 100, 408, 483
MroNI GCCGGC 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 4 cut(s) 69, 180, 276, 351
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 2 cut(s) 295, 628
MspR9I CCNGG 2 cut(s) 156, 629
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 119, 533, 713
NaeI GCCGGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 629
NdeII GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
NgoMIV GCCGGC 1 cut(s) 294
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 4 cut(s) 55, 344, 439, 722
PfoI TCCNGGA 2 cut(s) 154, 627
PkrI GCNGC 2 cut(s) 112, 535
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
PshBI ATTAAT 2 cut(s) 69, 351
Psp124BI GAGCTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 517
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 2 cut(s) 515, 516
PsuI RGATCY 3 cut(s) 428, 568, 576
PvuII CAGCTG 1 cut(s) 536
RigI GGCCGGCC 1 cut(s) 298
RsaI GTAC 2 cut(s) 203, 749
RsaNI GTAC 2 cut(s) 202, 748
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 4 cut(s) 69, 180, 276, 351
SatI GCNGC 2 cut(s) 111, 534
Sau3AI GATC 7 cut(s) 73, 395, 428, 568, 576, 586, 667
Sau96I GGNCC 2 cut(s) 515, 516
SchI GAGTC 1 cut(s) 814
ScrFI CCNGG 2 cut(s) 156, 629
SduI GDGCHC 2 cut(s) 519, 564
SfaNI GCATC 5 cut(s) 122, 126, 178, 518, 703
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 3 cut(s) 572, 741, 822
SmoI CTYRAG 3 cut(s) 572, 741, 822
Sse9I AATT 3 cut(s) 255, 273, 481
SspMI CTAG 2 cut(s) 662, 764
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 154, 627
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 1 cut(s) 702
TaiI ACGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 102, 554
TasI AATT 3 cut(s) 255, 273, 481
TfiI GAWTC 4 cut(s) 55, 344, 439, 722
Tru1I TTAA 4 cut(s) 69, 180, 276, 351
Tru9I TTAA 4 cut(s) 69, 180, 276, 351
TscAI CASTG 4 cut(s) 306, 390, 456, 693
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 2 cut(s) 110, 533
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 3 cut(s) 380, 735, 795
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 4 cut(s) 306, 390, 456, 693
VspI ATTAAT 2 cut(s) 69, 351
XmaJI CCTAGG 1 cut(s) 763
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 2 cut(s) 662, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.