Prupe.5G189900_v2.0.a1

Microtubule-associated protein RP EB family member

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
15586268 .. 15590582
4315 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G189900.2

Sequence Viewer

Length: 840 bp
ATGGCTTCCAACATAGGCATAATGGACAGTGCTTACTTTGTTGGACGGAATGAGATTTTAACATGGATCAACAATCGTCTTCAGCTCAATCTCTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGTCAAATGATGGATATGACCTATCCAGGAGTTGTTCCAATGCACAAGGTCAATTTTGATGCTAAGACAGAATATGATATGATCCAAAATTATAAGGTTCTGCAGGAAGTATTCAACAAGTTGAAAATTGAGAAGCATCTTGAAGTCAATAGACTTGTTAAAGGCAGGCCTTTGGACAACTTGGAGTTCTTGCAATGGCTGAAGCGCTACTGTGATTCTGTAAATGGTGGCATAATGAATGAAAACTATAACCCCGTGGAGCGAAGGTGCAAGGGTGGGAAGGATCGGTATCCCAAGGGTTCTCAGAAATTCTCAAAATCTTTGCAAACAAACAATTTACATAACCCTGGCTCTGGCGATACAGTTGGTCTCAGTAAAACCTCTGGACCAAAGCAAGGGAAGCCTTATGCAGCGGCTGGGGGTGCTAATTCTTCAGGAGAGGTTCAGGCTTTGTCCAAGGAGATTACAGATCTCAAGCTCTCCGTGGACCTTTTGGAAAAAGAAAGGGATTTTTACTTTGCAAAATTAAGGGATATTGAAATTCTCTGTCAGACGTCTGAATTGGAGGAACTTCCGATGGCAGTAGCAATAAAGAAAATATTATATGCTGCCGATGCAAAAGAATCACCACTTGCTGAAGCCCAGGAGTACCTCTACCAATCCATGAATGCTGATGAGAAAGAAGCTGAAACCGAAGAAACTGATCCCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

280

Amino Acids

31.41

Weight (kDa)

5.36

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013366)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AatII GACGTC 1 cut(s) 686
AciI CCGC 1 cut(s) 542
AclWI GGATC 4 cut(s) 74, 205, 420, 827
AcsI RAATTY 2 cut(s) 437, 669
AcuI CTGAAG 4 cut(s) 65, 350, 546, 786
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 1 cut(s) 779
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 482, 524
AgsI TTSAA 5 cut(s) 104, 244, 253, 272, 668
AjnI CCWGG 3 cut(s) 154, 475, 771
AluBI AGCT 3 cut(s) 85, 607, 815
AluI AGCT 3 cut(s) 85, 607, 815
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 4 cut(s) 74, 205, 420, 827
AlwNI CAGNNNCTG 1 cut(s) 545
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 110, 539, 737
ApoI RAATTY 2 cut(s) 437, 669
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 515, 616
AsuHPI GGTGA 1 cut(s) 747
AvaII GGWCC 2 cut(s) 515, 616
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 97, 551, 724
BccI CCATC 2 cut(s) 133, 700
BciT130I CCWGG 3 cut(s) 156, 477, 773
BciVI GTATCC 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 429
BglII AGATCT 1 cut(s) 598
BisI GCNGC 4 cut(s) 111, 540, 543, 738
BlsI GCNGC 4 cut(s) 112, 541, 544, 739
Bme1390I CCNGG 3 cut(s) 156, 477, 773
Bme18I GGWCC 2 cut(s) 515, 616
BmgT120I GGNCC 2 cut(s) 515, 616
BmrFI CCNGG 3 cut(s) 156, 477, 773
BmsI GCATC 4 cut(s) 122, 178, 274, 733
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 6 cut(s) 384, 423, 475, 585, 612, 771
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 524
Bse3DI GCAATG 2 cut(s) 134, 329
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 3 cut(s) 156, 477, 773
BseDI CCNNGG 6 cut(s) 384, 423, 475, 585, 612, 771
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 482, 524
BseMI GCAATG 2 cut(s) 134, 329
BseMII CTCAG 2 cut(s) 446, 514
BseXI GCAGC 3 cut(s) 97, 551, 724
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 482, 524
BsmAI GTCTC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 503
Bsp143I GATC 5 cut(s) 66, 210, 412, 598, 832
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 2 cut(s) 445, 513
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 4 cut(s) 74, 205, 420, 827
BspTNI GGTCTC 1 cut(s) 503
BsrDI GCAATG 2 cut(s) 134, 329
BssECI CCNNGG 6 cut(s) 384, 423, 475, 585, 612, 771
BssMI GATC 5 cut(s) 66, 210, 412, 598, 832
BssNI GRCGYC 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 423, 585
Bst2UI CCWGG 3 cut(s) 156, 477, 773
Bst4CI ACNGT 3 cut(s) 29, 341, 493
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 683
BstAPI GCANNNNNTGC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 192, 432, 500
BstDSI CCRYGG 2 cut(s) 384, 612
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 5 cut(s) 69, 213, 415, 601, 835
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 5 cut(s) 66, 210, 412, 598, 832
BstMWI GCNNNNNNNGC 4 cut(s) 119, 529, 551, 743
BstNI CCWGG 3 cut(s) 156, 477, 773
BstSCI CCNGG 3 cut(s) 154, 475, 771
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 97, 551, 724
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 2 cut(s) 384, 612
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 515, 616
Csp6I GTAC 1 cut(s) 778
CviAII CATG 2 cut(s) 63, 793
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 3 cut(s) 192, 432, 500
DpnI GATC 5 cut(s) 68, 212, 414, 600, 834
DpnII GATC 5 cut(s) 66, 210, 412, 598, 832
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 423, 585
Eco147I AGGCCT 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 515, 616
Eco47III AGCGCT 1 cut(s) 335
Eco57I CTGAAG 4 cut(s) 65, 350, 546, 786
EcoRII CCWGG 3 cut(s) 154, 475, 771
EcoT14I CCWWGG 2 cut(s) 423, 585
ErhI CCWWGG 2 cut(s) 423, 585
FaeI CATG 2 cut(s) 66, 796
FatI CATG 2 cut(s) 62, 792
Fnu4HI GCNGC 4 cut(s) 111, 540, 543, 738
Fsp4HI GCNGC 4 cut(s) 111, 540, 543, 738
GlaI GCGC 1 cut(s) 335
GluI GCNGC 4 cut(s) 111, 540, 543, 738
GsaI CCCAGC 1 cut(s) 549
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 1 cut(s) 298
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 2 cut(s) 66, 796
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 2 cut(s) 344, 752
HphI GGTGA 1 cut(s) 747
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 4 cut(s) 435, 681, 688, 705
Hpy188III TCNNGA 3 cut(s) 269, 513, 564
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 2 cut(s) 387, 403
HpyCH4III ACNGT 3 cut(s) 29, 341, 493
HpyCH4IV ACGT 1 cut(s) 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 529, 551, 743
HpyF3I CTNAG 3 cut(s) 192, 432, 500
HpySE526I ACGT 1 cut(s) 683
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 2 cut(s) 66, 796
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 5 cut(s) 66, 210, 412, 598, 832
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 3 cut(s) 97, 551, 724
LweI GCATC 4 cut(s) 122, 178, 274, 733
MaeII ACGT 1 cut(s) 683
MalI GATC 5 cut(s) 68, 212, 414, 600, 834
MboI GATC 5 cut(s) 66, 210, 412, 598, 832
MboII GAAGA 4 cut(s) 71, 116, 552, 836
MflI RGATCY 1 cut(s) 598
MluCI AATT 9 cut(s) 181, 217, 255, 437, 463, 556, 653, 669, 689
MmeI TCCRAC 2 cut(s) 22, 33
MnlI CCTC 5 cut(s) 100, 520, 562, 688, 791
MseI TTAA 3 cut(s) 59, 288, 656
MspA1I CMGCKG 1 cut(s) 542
MspR9I CCNGG 3 cut(s) 156, 477, 773
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 3 cut(s) 156, 477, 773
MwoI GCNNNNNNNGC 4 cut(s) 119, 529, 551, 743
NdeII GATC 5 cut(s) 66, 210, 412, 598, 832
NlaIII CATG 2 cut(s) 66, 796
PceI AGGCCT 1 cut(s) 298
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 344, 752
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 4 cut(s) 112, 541, 544, 739
PsiI TTATAA 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 154, 475, 771
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 3 cut(s) 154, 475, 771
PspPI GGNCC 2 cut(s) 515, 616
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
SaqAI TTAA 3 cut(s) 59, 288, 656
SatI GCNGC 4 cut(s) 111, 540, 543, 738
Sau3AI GATC 5 cut(s) 66, 210, 412, 598, 832
Sau96I GGNCC 2 cut(s) 515, 616
ScrFI CCNGG 3 cut(s) 156, 477, 773
SfaNI GCATC 4 cut(s) 122, 178, 274, 733
SfcI CTRYAG 1 cut(s) 230
SinI GGWCC 2 cut(s) 515, 616
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 9 cut(s) 181, 217, 255, 437, 463, 556, 653, 669, 689
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 1 cut(s) 542
SspI AATATT 1 cut(s) 729
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 3 cut(s) 154, 475, 771
StyI CCWWGG 2 cut(s) 423, 585
TaaI ACNGT 3 cut(s) 29, 341, 493
TaiI ACGT 1 cut(s) 686
TasI AATT 9 cut(s) 181, 217, 255, 437, 463, 556, 653, 669, 689
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 344, 752
Tru1I TTAA 3 cut(s) 59, 288, 656
Tru9I TTAA 3 cut(s) 59, 288, 656
TscAI CASTG 1 cut(s) 34
TseI GCWGC 3 cut(s) 110, 539, 737
TspDTI ATGAA 3 cut(s) 380, 384, 809
TspGWI ACGGA 2 cut(s) 61, 601
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 515, 616
XapI RAATTY 2 cut(s) 437, 669
ZraI GACGTC 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.