Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013366

Physical Location & Seq

Genomic Coordinates Reverse (-)

64485203 .. 64488996

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTTCCAATATAGGAATTATGGACAGTGCTTACTTTGTTGGAAGGAATGAGATTTTGACTTGGATCAACAATCGTCTTCAGCTCAATCTCTCTCGCATCGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAAATGATGGATATGACGTACCCAGGAGTTGTTCCAATGCACAAGGTCAATTTTGATGCGAAGACAGAATATGACATGATCCAGAACTATAAGATTTTACAGGAGGTGTTCAATAAGTTAAAAATTGAGAAGCCTCTTGAAGTCAATAGGCTTGTTAAAGGCAGGCCTTTGGACAACTTGGAGTTCTTACAATGGCTGAAACGATACTGTGATTCTGTCAATGGTGGCATTATGAATGAAAATTATAATCCTGTTGAGCGAAGGTGCAAGGGAGGGAAGGAACGGTATGCCAAGGGTTCTCAAAAAATCCCAAAATCGCTGCAAGCAAACAATTCAGGTGACCCAGTTGGTCTTAGCAGAACCTCTGGTGGTGCTAATTATGCAGGAGAGGTCCTAGCTTTGTCTAAGGAGATAACAGATCTCAAGGTCTCGGTGGACCTTTTGGAAAAAGAAAGAGACTTCTACTTTGGAAAACTGAGGGATATTGAAATTCTTTGTCAAACGTCCGGATTGGAGAGTATCCCGATGTCAGTAGCAATAAAGAAGATATTGTATGCTGCTGATGCAAAAGAATCAGCTCTTGCCAAAGCTCAAGAATATCTCCTTTCCGTGAAAGAAGATGAAATTGAAGCAGGAGCTGGAGCTGGAGATGGAGCTGAAGCTGAAGCTGAAGCTGAAACAGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000922 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006355 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009629 GO:0009630 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010005 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030496 GO:0030863 GO:0030981 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055028 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH EB1

Protein Analysis

273

Amino Acids

30.29

Weight (kDa)

5.09

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	16 - 114	5.7e-10	Calponin homology (CH) domain
EB1	PF03271	192 - 230	5.3e-16	EB1-like C-terminal motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47690
fragaria_vesca	FvH4_5g15190 FvH4_5g15190
malus_domestica	MD00G1186200.v1.1 MD06G1191400.v1.1 MD14G1197800.v1.1
prunus_persica	Prupe.5G189900_v2.0.a1 Prupe.5G189900_v2.0.a1
pyrus_communis	pycom14g16430
rosa_chinensis	RchiOBHm_Chr7g0180971
rosa_laevigata	RLG00000005220
rosa_multiflora	Rmu_sc0004056.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272370
rosa_rugosa	Rorug06G0438000 Rorug06G0438100
rosa_samantha	Rh7BG038800 Rh7DG039000
rosa_wichuraiana	Rw7G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	638
AclWI	GGATC	3 cut(s)	74, 205, 809
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	4 cut(s)	65, 810, 816, 822
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	244, 272, 620, 761
AjnI	CCWGG	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	565, 582
AlwI	GGATC	3 cut(s)	74, 205, 809
AlwNI	CAGNNNCTG	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	638
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	110, 451, 689
ApoI	RAATTY	1 cut(s)	621
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspS9I	GGNCC	2 cut(s)	523, 568
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	523, 568
BbsI	GAAGAC	2 cut(s)	71, 200
BbvI	GCAGC	3 cut(s)	97, 438, 676
BccI	CCATC	2 cut(s)	133, 776
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	565, 582
BfaI	CTAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	3 cut(s)	111, 452, 690
BlsI	GCNGC	3 cut(s)	112, 453, 691
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	523, 568
BmgT120I	GGNCC	2 cut(s)	523, 568
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	4 cut(s)	108, 122, 178, 685
BmuI	ACTGGG	1 cut(s)	470
BpiI	GAAGAC	2 cut(s)	71, 200
BpmI	CTGGAG	2 cut(s)	792, 798
BpuEI	CTTGAG	2 cut(s)	539, 708
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	154, 423
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	154, 423
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	1 cut(s)	476
BseXI	GCAGC	3 cut(s)	97, 438, 676
BshFI	GGCC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	565, 582
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	638
Bsp143I	GATC	4 cut(s)	66, 210, 550, 814
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	600
BspEI	TCCGGA	1 cut(s)	638
BspPI	GGATC	3 cut(s)	74, 205, 809
BspTNI	GGTCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	154, 423
BssMI	GATC	4 cut(s)	66, 210, 550, 814
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	29, 341, 417
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	296, 456
BstDEI	CTNAG	3 cut(s)	485, 537, 608
BstEII	GGTNACC	1 cut(s)	470
BstKTI	GATC	4 cut(s)	69, 213, 553, 817
BstMAI	GTCTC	2 cut(s)	565, 582
BstMBI	GATC	4 cut(s)	66, 210, 550, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 512, 695
BstNI	CCWGG	1 cut(s)	156
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	97, 438, 676
BstV2I	GAAGAC	2 cut(s)	71, 200
BstX2I	RGATCY	2 cut(s)	550, 814
BstYI	RGATCY	2 cut(s)	550, 814
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	296, 456
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	523, 568
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	208, 819
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	485, 537, 608
DpnI	GATC	4 cut(s)	68, 212, 552, 816
DpnII	GATC	4 cut(s)	66, 210, 550, 814
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	523, 568
Eco57I	CTGAAG	4 cut(s)	65, 810, 816, 822
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	211, 822
FatI	CATG	2 cut(s)	207, 818
Fnu4HI	GCNGC	3 cut(s)	111, 452, 690
Fsp4HI	GCNGC	3 cut(s)	111, 452, 690
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	3 cut(s)	111, 452, 690
GsuI	CTGGAG	2 cut(s)	792, 798
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	2 cut(s)	211, 822
HinfI	GANTC	2 cut(s)	344, 704
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188III	TCNNGA	5 cut(s)	214, 269, 639, 655, 725
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	3 cut(s)	39, 387, 403
HpyCH4III	ACNGT	3 cut(s)	29, 341, 417
HpyCH4IV	ACGT	2 cut(s)	149, 635
HpyCH4V	TGCA	7 cut(s)	113, 127, 172, 399, 454, 515, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 512, 695
HpyF3I	CTNAG	3 cut(s)	485, 537, 608
HpySE526I	ACGT	2 cut(s)	149, 635
Hsp92II	CATG	2 cut(s)	211, 822
Kpn2I	TCCGGA	1 cut(s)	638
Kzo9I	GATC	4 cut(s)	66, 210, 550, 814
LmnI	GCTCC	3 cut(s)	767, 773, 785
Lsp1109I	GCAGC	3 cut(s)	97, 438, 676
LweI	GCATC	4 cut(s)	108, 122, 178, 685
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	2 cut(s)	149, 635
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	68, 212, 552, 816
MboI	GATC	4 cut(s)	66, 210, 550, 814
MboII	GAAGA	5 cut(s)	71, 116, 205, 688, 761
MflI	RGATCY	2 cut(s)	550, 814
MluCI	AATT	8 cut(s)	18, 181, 255, 373, 463, 508, 621, 756
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	100, 229, 276, 398, 505, 514, 603
MroI	TCCGGA	1 cut(s)	638
MseI	TTAA	2 cut(s)	251, 288
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	119, 512, 695
NdeII	GATC	4 cut(s)	66, 210, 550, 814
NlaIII	CATG	2 cut(s)	211, 822
NmuCI	GTSAC	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	344, 704
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	112, 453, 691
PpuMI	RGGWCCY	1 cut(s)	523
PsiI	TTATAA	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	154
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	523, 568
PspPPI	RGGWCCY	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	550, 814
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	251, 288
SatI	GCNGC	3 cut(s)	111, 452, 690
Sau3AI	GATC	4 cut(s)	66, 210, 550, 814
Sau96I	GGNCC	2 cut(s)	523, 568
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	4 cut(s)	108, 122, 178, 685
SinI	GGWCC	2 cut(s)	523, 568
SmlI	CTYRAG	2 cut(s)	554, 723
SmoI	CTYRAG	2 cut(s)	554, 723
Sse9I	AATT	8 cut(s)	18, 181, 255, 373, 463, 508, 621, 756
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	29, 341, 417
TaiI	ACGT	2 cut(s)	152, 638
TaqI	TCGA	1 cut(s)	102
TasI	AATT	8 cut(s)	18, 181, 255, 373, 463, 508, 621, 756
TfiI	GAWTC	2 cut(s)	344, 704
Tru1I	TTAA	2 cut(s)	251, 288
Tru9I	TTAA	2 cut(s)	251, 288
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	110, 451, 689
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	380, 384, 768
TspGWI	ACGGA	1 cut(s)	730
TspRI	CASTG	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	523, 568
XapI	RAATTY	1 cut(s)	621
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.