Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013366

Physical Location & Seq

Genomic Coordinates Reverse (-)

65979064 .. 65982065

Gene Structure 3002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTTCCAACATAGGAATTATGGACAGTGCTTACTTCGTTGGAAGGAATGAGATTTTGACTTGGATCAACAATCGTCTTCAGCTCAATCTCTCTCGCATCGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAAATGATGGATATGACGTACCCGGGAGTTGTTCCAATGCACAAGGTCAATTTTGATGCGAAGACAGAATATGATATGATCCAGAACTATAAGATTTTACAGGAGGTGTTCAATAAGTTAAAAATTGAGAAGCCTCTTGAAGTCAATAGGCTTGTTAAAGGCAGGCCTTTGGACAACTTGGAGTTCTTACAATGGCTGAAACGATACTGTGATTCAGTCAATGGTGGCATTATGAATGAAAATTATAATCCTGTTGAGCGAAGGTGCAAGGGAGGGAAGGAACGGTATGCCAAGGGTTCTCAAAAAATCCCAAAATCACTGCAAGCAAACAATTCAGGTGACCCAGTTGGTCTTAGCAGAACCTCTGGACCAAAGCAAGGGAAGACTTATGCAGGGGCAGGTGGTGCTAATTATGCAGGAGAGGTCCTAGCTTTGTCTAAGGAGATAACAGATCTCAAGGTCTCGGTGGACCTTTTGGAAAAAGAAAGAGACTTTTACTTTGGAAAACTGAGGGATATTGAAATTCTTTGTCAAACGTCCGGATTGGAGAGTATCCCGATGTCAGTAGCAATAAAGAAGATATTGTATGCTGCTGATGCAAAAGAATCAGCTCTTGCCAAAGCTCAAGAATATCTCCTTTCCGTGAAAGAAGATGAAATTGAAGCAGGAGCTGGAGCTGGAGCTGAAGCTGAAGCTGCAGCTGAAACAGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000922 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006355 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009629 GO:0009630 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010005 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030496 GO:0030863 GO:0030981 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055028 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH EB1

Protein Analysis

283

Amino Acids

31.12

Weight (kDa)

5.54

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	16 - 114	6.1e-10	Calponin homology (CH) domain
EB1	PF03271	203 - 241	5.5e-16	EB1-like C-terminal motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47690
fragaria_vesca	FvH4_5g15190 FvH4_5g15190
malus_domestica	MD00G1186200.v1.1 MD06G1191400.v1.1 MD14G1197800.v1.1
prunus_persica	Prupe.5G189900_v2.0.a1 Prupe.5G189900_v2.0.a1
pyrus_communis	pycom14g16430
rosa_chinensis	RchiOBHm_Chr7g0180971
rosa_laevigata	RLG00000005220
rosa_multiflora	Rmu_sc0004056.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272370
rosa_rugosa	Rorug06G0438000 Rorug06G0438100
rosa_samantha	Rh7BG038800 Rh7DG039000
rosa_wichuraiana	Rw7G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AarI	CACCTGC	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	671
AclWI	GGATC	3 cut(s)	74, 205, 836
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	3 cut(s)	65, 837, 843
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	139, 509
AgsI	TTSAA	4 cut(s)	244, 272, 653, 794
Alw26I	GTCTC	2 cut(s)	598, 615
AlwI	GGATC	3 cut(s)	74, 205, 836
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	4 cut(s)	110, 722, 827, 830
ApoI	RAATTY	1 cut(s)	654
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AspS9I	GGNCC	3 cut(s)	500, 556, 601
AsuC2I	CCSGG	2 cut(s)	155, 156
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	3 cut(s)	500, 556, 601
BbsI	GAAGAC	3 cut(s)	71, 200, 521
BbvI	GCAGC	4 cut(s)	97, 709, 814, 842
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciVI	GTATCC	1 cut(s)	695
BcnI	CCSGG	2 cut(s)	155, 156
BcoDI	GTCTC	2 cut(s)	598, 615
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	828
BfuAI	ACCTGC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	695
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	4 cut(s)	111, 723, 828, 831
BlsI	GCNGC	4 cut(s)	112, 724, 829, 832
Bme1390I	CCNGG	2 cut(s)	155, 156
Bme18I	GGWCC	3 cut(s)	500, 556, 601
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	500, 556, 601
BmrFI	CCNGG	2 cut(s)	155, 156
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	4 cut(s)	108, 122, 178, 718
BmuI	ACTGGG	1 cut(s)	470
BpiI	GAAGAC	3 cut(s)	71, 200, 521
BpmI	CTGGAG	2 cut(s)	825, 831
BpuEI	CTTGAG	2 cut(s)	572, 741
BpuMI	CCSGG	2 cut(s)	155, 156
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	154, 423
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 509
Bse1I	ACTGG	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	154, 423
BseLI	CCNNNNNNNGG	2 cut(s)	139, 509
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	97, 709, 814, 842
BshFI	GGCC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	155, 672
BslI	CCNNNNNNNGG	2 cut(s)	139, 509
BsmAI	GTCTC	2 cut(s)	598, 615
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	4 cut(s)	66, 210, 583, 841
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	74, 205, 836
BspTNI	GGTCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	154, 423
BssMI	GATC	4 cut(s)	66, 210, 583, 841
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	29, 341, 417
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	2 cut(s)	119, 536
BstC8I	GCNNGC	2 cut(s)	296, 456
BstDEI	CTNAG	3 cut(s)	485, 570, 641
BstEII	GGTNACC	1 cut(s)	470
BstKTI	GATC	4 cut(s)	69, 213, 586, 844
BstMAI	GTCTC	2 cut(s)	598, 615
BstMBI	GATC	4 cut(s)	66, 210, 583, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 536, 545, 728, 827
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	153, 154
BstSFI	CTRYAG	1 cut(s)	828
BstV1I	GCAGC	4 cut(s)	97, 709, 814, 842
BstV2I	GAAGAC	3 cut(s)	71, 200, 521
BstX2I	RGATCY	2 cut(s)	583, 841
BstYI	RGATCY	2 cut(s)	583, 841
BsuI	GTATCC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	34, 449
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	296, 456
CaiI	CAGNNNCTG	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	500, 556, 601
Cfr9I	CCCGGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	846
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	485, 570, 641
DpnI	GATC	4 cut(s)	68, 212, 585, 843
DpnII	GATC	4 cut(s)	66, 210, 583, 841
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	3 cut(s)	500, 556, 601
Eco57I	CTGAAG	3 cut(s)	65, 837, 843
Eco88I	CYCGRG	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	849
FatI	CATG	1 cut(s)	845
Fnu4HI	GCNGC	4 cut(s)	111, 723, 828, 831
Fsp4HI	GCNGC	4 cut(s)	111, 723, 828, 831
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	4 cut(s)	111, 723, 828, 831
GsuI	CTGGAG	2 cut(s)	825, 831
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	2 cut(s)	155, 672
Hin1II	CATG	1 cut(s)	849
HinfI	GANTC	2 cut(s)	344, 737
HpaII	CCGG	2 cut(s)	155, 672
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188III	TCNNGA	6 cut(s)	214, 269, 498, 672, 688, 758
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	3 cut(s)	39, 387, 403
HpyCH4III	ACNGT	3 cut(s)	29, 341, 417
HpyCH4IV	ACGT	2 cut(s)	149, 668
HpyCH4V	TGCA	9 cut(s)	113, 127, 172, 399, 454, 524, 548, 731, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 536, 545, 728, 827
HpyF3I	CTNAG	3 cut(s)	485, 570, 641
HpySE526I	ACGT	2 cut(s)	149, 668
Hsp92II	CATG	1 cut(s)	849
Kpn2I	TCCGGA	1 cut(s)	671
Kzo9I	GATC	4 cut(s)	66, 210, 583, 841
LmnI	GCTCC	3 cut(s)	800, 806, 812
Lsp1109I	GCAGC	4 cut(s)	97, 709, 814, 842
LweI	GCATC	4 cut(s)	108, 122, 178, 718
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	149, 668
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	68, 212, 585, 843
MboI	GATC	4 cut(s)	66, 210, 583, 841
MboII	GAAGA	6 cut(s)	71, 116, 205, 526, 721, 794
MflI	RGATCY	2 cut(s)	583, 841
MluCI	AATT	8 cut(s)	18, 181, 255, 373, 463, 541, 654, 789
MmeI	TCCRAC	2 cut(s)	22, 33
MnlI	CCTC	7 cut(s)	100, 229, 276, 398, 505, 547, 636
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	2 cut(s)	251, 288
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	2 cut(s)	155, 672
MspR9I	CCNGG	2 cut(s)	155, 156
MwoI	GCNNNNNNNGC	5 cut(s)	119, 536, 545, 728, 827
NciI	CCSGG	2 cut(s)	155, 156
NdeII	GATC	4 cut(s)	66, 210, 583, 841
NlaIII	CATG	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	470
PaqCI	CACCTGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	344, 737
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	112, 724, 829, 832
PpuMI	RGGWCCY	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	470
PspPI	GGNCC	3 cut(s)	500, 556, 601
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	583, 841
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	251, 288
SatI	GCNGC	4 cut(s)	111, 723, 828, 831
Sau3AI	GATC	4 cut(s)	66, 210, 583, 841
Sau96I	GGNCC	3 cut(s)	500, 556, 601
ScrFI	CCNGG	2 cut(s)	155, 156
SfaNI	GCATC	4 cut(s)	108, 122, 178, 718
SfcI	CTRYAG	1 cut(s)	828
SinI	GGWCC	3 cut(s)	500, 556, 601
SmaI	CCCGGG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	587, 756
SmoI	CTYRAG	2 cut(s)	587, 756
Sse9I	AATT	8 cut(s)	18, 181, 255, 373, 463, 541, 654, 789
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	153, 154
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	29, 341, 417
TaiI	ACGT	2 cut(s)	152, 671
TaqI	TCGA	1 cut(s)	102
TasI	AATT	8 cut(s)	18, 181, 255, 373, 463, 541, 654, 789
TfiI	GAWTC	2 cut(s)	344, 737
Tru1I	TTAA	2 cut(s)	251, 288
Tru9I	TTAA	2 cut(s)	251, 288
TscAI	CASTG	2 cut(s)	34, 456
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	4 cut(s)	110, 722, 827, 830
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	380, 384, 801
TspGWI	ACGGA	1 cut(s)	763
TspMI	CCCGGG	1 cut(s)	154
TspRI	CASTG	2 cut(s)	34, 456
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	500, 556, 601
XapI	RAATTY	1 cut(s)	654
XmaI	CCCGGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.