Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016660

Physical Location & Seq

Genomic Coordinates Reverse (-)

17725410 .. 17728256

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAATCCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGTTTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAGGGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAGAAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCAGCAACACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTTATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGATCTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACTACAACCCAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTGGTCTAGACCAGACTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATTAGTCTTGAACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAAGCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCTTCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTACAACCACTCGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCAAAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACGAAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGATGTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGTCTTCGTCTCCTCGTGAGGGAAATATCGGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIG_1_N zf-RING_2

Protein Analysis

349

Amino Acids

38.69

Weight (kDa)

8.02

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIG_1_N	PF04588	20 - 69	9e-19	Hypoxia induced protein conserved region
zf-RING_2	PF13639	206 - 249	1.2e-14	Ring finger domain
zf-RING_11	PF17123	206 - 235	2.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	207 - 248	6.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	207 - 248	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	207 - 250	8.9e-06	zinc-RING finger domain
zf-rbx1	PF12678	222 - 249	2.9e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	222 - 254	9.6e-07	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48030 AT3G48030
fragaria_vesca	FvH4_5g05020
malus_domestica	MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica	Prupe.5G177100_v2.0.a1
pyrus_communis	pycom14g15350
rosa_chinensis	RchiOBHm_Chr7g0194021
rosa_roxburghii	Rroxscaffold_3G00261610
rosa_rugosa	Rorug07G0013200
rosa_samantha	Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana	Rw7G011990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	811
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	90, 92, 433
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	3 cut(s)	809, 810, 1031
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	339, 424, 469, 605, 883
AhdI	GACNNNNNGTC	1 cut(s)	917
AjnI	CCWGG	2 cut(s)	36, 177
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	164, 275, 342, 508, 658
AluI	AGCT	5 cut(s)	164, 275, 342, 508, 658
Alw21I	GWGCWC	2 cut(s)	82, 102
Alw26I	GTCTC	4 cut(s)	635, 782, 875, 1026
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	872
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	236, 273
AsuII	TTCGAA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	872
BaeGI	GKGCMC	2 cut(s)	82, 971
BauI	CACGAG	1 cut(s)	1026
BbsI	GAAGAC	2 cut(s)	388, 1008
Bbv12I	GWGCWC	2 cut(s)	82, 102
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	4 cut(s)	340, 563, 699, 958
BceAI	ACGGC	3 cut(s)	120, 608, 847
BciT130I	CCWGG	2 cut(s)	38, 179
BcoDI	GTCTC	4 cut(s)	635, 782, 875, 1026
BfaI	CTAG	2 cut(s)	165, 542
BfmI	CTRYAG	3 cut(s)	297, 345, 742
BfuAI	ACCTGC	1 cut(s)	811
BglII	AGATCT	2 cut(s)	28, 481
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	38, 179
BmeRI	GACNNNNNGTC	1 cut(s)	917
BmeT110I	CYCGRG	1 cut(s)	872
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	38, 179
BmsI	GCATC	2 cut(s)	550, 823
BoxI	GACNNNNGTC	2 cut(s)	537, 794
BpiI	GAAGAC	2 cut(s)	388, 1008
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	722
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	4 cut(s)	90, 178, 233, 400
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	809, 810, 1031
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	38, 179
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	90, 178, 233, 400
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	3 cut(s)	809, 810, 1031
BseMII	CTCAG	3 cut(s)	152, 518, 673
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	487, 1014
BseSI	GKGCMC	2 cut(s)	82, 971
BseXI	GCAGC	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	1045
BshTI	ACCGGT	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	558
BsiEI	CGRYCG	1 cut(s)	1045
BsiHKAI	GWGCWC	2 cut(s)	82, 102
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	809, 810, 1031
BsmAI	GTCTC	4 cut(s)	635, 782, 875, 1026
BsmBI	CGTCTC	2 cut(s)	875, 1026
BsmI	GAATGC	1 cut(s)	948
BsoBI	CYCGRG	1 cut(s)	872
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	3 cut(s)	82, 102, 971
Bsp143I	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
BspACI	CCGC	3 cut(s)	90, 92, 433
BspCNI	CTCAG	3 cut(s)	151, 517, 672
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	2 cut(s)	301, 746
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	90, 178, 233, 400
BssMI	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
BssSI	CACGAG	1 cut(s)	1026
Bst2BI	CACGAG	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	38, 179
Bst4CI	ACNGT	4 cut(s)	190, 224, 701, 978
Bst6I	CTCTTC	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	971
BstDEI	CTNAG	3 cut(s)	138, 504, 659
BstDSI	CCRYGG	2 cut(s)	90, 233
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	6 cut(s)	31, 331, 420, 484, 752, 994
BstMAI	GTCTC	4 cut(s)	635, 782, 875, 1026
BstMBI	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
BstMCI	CGRYCG	1 cut(s)	1045
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 560, 741, 845
BstNI	CCWGG	2 cut(s)	38, 179
BstPAI	GACNNNNGTC	2 cut(s)	537, 794
BstSCI	CCNGG	2 cut(s)	36, 177
BstSFI	CTRYAG	3 cut(s)	297, 345, 742
BstSLI	GKGCMC	2 cut(s)	82, 971
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	2 cut(s)	388, 1008
BstX2I	RGATCY	3 cut(s)	28, 328, 481
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	3 cut(s)	28, 328, 481
Bsu15I	ATCGAT	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	2 cut(s)	90, 233
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	576, 697
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	971
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	209
Cfr42I	CCGCGG	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	558
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	6 cut(s)	22, 263, 530, 683, 711, 914
DdeI	CTNAG	3 cut(s)	138, 504, 659
DpnI	GATC	6 cut(s)	30, 330, 419, 483, 751, 993
DpnII	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
DriI	GACNNNNNGTC	1 cut(s)	917
Eam1104I	CTCTTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	36, 177
Esp3I	CGTCTC	2 cut(s)	875, 1026
FaeI	CATG	6 cut(s)	25, 266, 533, 686, 714, 917
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FatI	CATG	6 cut(s)	21, 262, 529, 682, 710, 913
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	165, 542
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	494
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	6 cut(s)	25, 266, 533, 686, 714, 917
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	1 cut(s)	908
HindII	GTYRAC	1 cut(s)	908
HinfI	GANTC	4 cut(s)	58, 533, 790, 879
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	236, 273
Hpy166II	GTNNAC	2 cut(s)	80, 908
Hpy188I	TCNGA	5 cut(s)	125, 256, 646, 662, 787
Hpy188III	TCNNGA	6 cut(s)	55, 542, 602, 874, 995, 1028
Hpy8I	GTNNAC	2 cut(s)	80, 908
HpyCH4III	ACNGT	4 cut(s)	190, 224, 701, 978
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	4 cut(s)	80, 299, 563, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 560, 741, 845
HpyF3I	CTNAG	3 cut(s)	138, 504, 659
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	6 cut(s)	25, 266, 533, 686, 714, 917
HspAI	GCGC	1 cut(s)	621
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	550, 823
MaeI	CTAG	2 cut(s)	165, 542
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	3 cut(s)	243, 589, 956
MalI	GATC	6 cut(s)	30, 330, 419, 483, 751, 993
MboI	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
MflI	RGATCY	3 cut(s)	28, 328, 481
MhlI	GDGCHC	3 cut(s)	82, 102, 971
MluCI	AATT	2 cut(s)	133, 425
MlyI	GAGTC	2 cut(s)	527, 784
MmeI	TCCRAC	1 cut(s)	184
MseI	TTAA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	38, 179
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	38, 179
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	191, 560, 741, 845
NdeII	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
NlaIII	CATG	6 cut(s)	25, 266, 533, 686, 714, 917
NlaIV	GGNNCC	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	722
PaqCI	CACCTGC	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	58, 879
PfoI	TCCNGGA	1 cut(s)	36
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	2 cut(s)	527, 784
PpsI	GAGTC	2 cut(s)	527, 784
PshAI	GACNNNNGTC	2 cut(s)	537, 794
Psp6I	CCWGG	2 cut(s)	36, 177
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	2 cut(s)	36, 177
PspN4I	GGNNCC	1 cut(s)	208
PstI	CTGCAG	2 cut(s)	301, 746
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	28, 328, 481
SacII	CCGCGG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	6 cut(s)	28, 328, 417, 481, 749, 991
SchI	GAGTC	2 cut(s)	527, 784
ScrFI	CCNGG	2 cut(s)	38, 179
SduI	GDGCHC	3 cut(s)	82, 102, 971
SfaNI	GCATC	2 cut(s)	550, 823
SfcI	CTRYAG	3 cut(s)	297, 345, 742
Sfr303I	CCGCGG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	722
SgrBI	CCGCGG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	133, 425
SsiI	CCGC	3 cut(s)	90, 92, 433
SspMI	CTAG	2 cut(s)	165, 542
StyD4I	CCNGG	2 cut(s)	36, 177
TaaI	ACNGT	4 cut(s)	190, 224, 701, 978
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	6 cut(s)	443, 558, 615, 705, 722, 962
TaqII	GACCGA	1 cut(s)	1031
TasI	AATT	2 cut(s)	133, 425
TfiI	GAWTC	2 cut(s)	58, 879
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	2 cut(s)	576, 704
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	279, 282, 332, 942
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	576, 704
VneI	GTGCAC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	541
XspI	CTAG	2 cut(s)	165, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.