RchiOBHm_Chr7g0194021

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016660
Physical Location & Seq
Reverse (-)
12265274 .. 12266321
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17352

Sequence Viewer

Length: 252 bp
ATGATCTTGTGCTTCCTCATTTTACAATTTACTCTTCATTGTGATCATTCCAGTAACGTTTTGGAATTGAACTTTTCAGGGGCCTTTTTGACTGCTGCTGTGCTCACAGCCGGCTTAATCAGCTTCAGGCAAGGGAATTCTCAGTTAGGCCAGAAGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCCACAGTAGCACTTATGGTTGGCACCGCATACTACTACGGGGAGAATCCATGGAAGAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

83

Amino Acids

9.11

Weight (kDa)

9.18

Isoelectric Point (pI)

18.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 27 - 70 3e-15 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016660)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48030 AT3G48030
fragaria_vesca FvH4_5g05020
malus_domestica MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica Prupe.5G177100_v2.0.a1
pyrus_communis pycom14g15350
rosa_chinensis RchiOBHm_Chr7g0194021
rosa_roxburghii Rroxscaffold_3G00261610
rosa_rugosa Rorug07G0013200
rosa_samantha Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana Rw7G011990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 185, 209
AciI CCGC 1 cut(s) 213
AclI AACGTT 1 cut(s) 57
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 123, 157, 167
AluI AGCT 3 cut(s) 123, 157, 167
Alw21I GWGCWC 2 cut(s) 105, 169
AoxI GGCC 2 cut(s) 81, 148
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 81
BanI GGYRCC 2 cut(s) 185, 209
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 105, 169
BbvI GCAGC 1 cut(s) 82
BclI TGATCA 1 cut(s) 43
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 82, 187, 211
BsaJI CCNNGG 2 cut(s) 181, 236
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 181, 236
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 83, 150
BshNI GGYRCC 2 cut(s) 185, 209
BsiHKAI GWGCWC 2 cut(s) 105, 169
BsiSI CCGG 1 cut(s) 111
BsnI GGCC 2 cut(s) 83, 150
Bsp1286I GDGCHC 2 cut(s) 105, 169
Bsp143I GATC 2 cut(s) 3, 43
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 83, 150
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 82, 187, 211
BspT107I GGYRCC 2 cut(s) 185, 209
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 181, 236
BssMI GATC 2 cut(s) 3, 43
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 181, 236
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 236
BstKTI GATC 2 cut(s) 6, 46
BstMBI GATC 2 cut(s) 3, 43
BstMWI GCNNNNNNNGC 2 cut(s) 120, 194
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 83, 150
BtgI CCRYGG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 81
CviAII CATG 1 cut(s) 237
CviJI RGCY 7 cut(s) 83, 110, 114, 123, 150, 157, 167
CviKI_1 RGCY 7 cut(s) 83, 110, 114, 123, 150, 157, 167
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 5, 45
DpnII GATC 2 cut(s) 3, 43
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 181, 236
Eco24I GRGCYC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 181, 236
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 181, 236
FaeI CATG 1 cut(s) 240
FaiI YATR 3 cut(s) 203, 217, 238
FatI CATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 2 cut(s) 83, 150
HapII CCGG 1 cut(s) 111
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 194
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 240
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 2 cut(s) 3, 43
LpnPI CCDG 5 cut(s) 63, 64, 112, 124, 164
Lsp1109I GCAGC 1 cut(s) 82
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 5, 45
MboI GATC 2 cut(s) 3, 43
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 105, 169
MluCI AATT 3 cut(s) 26, 65, 136
MnlI CCTC 1 cut(s) 26
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 2 cut(s) 116, 250
MspI CCGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 120, 194
NaeI GCCGGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 236
NdeII GATC 2 cut(s) 3, 43
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 82, 187, 211
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 169
Psp1406I AACGTT 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 82, 187, 211
PspPI GGNCC 1 cut(s) 81
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 116, 250
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 3, 43
Sau96I GGNCC 1 cut(s) 81
SduI GDGCHC 2 cut(s) 105, 169
SetI ASST 5 cut(s) 60, 125, 159, 169, 187
Sse9I AATT 3 cut(s) 26, 65, 136
SsiI CCGC 1 cut(s) 213
SstI GAGCTC 1 cut(s) 169
StyI CCWWGG 2 cut(s) 181, 236
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 60
TasI AATT 3 cut(s) 26, 65, 136
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 116, 250
Tru9I TTAA 2 cut(s) 116, 250
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 26
XapI RAATTY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.