pycom14g15350

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016660
Physical Location & Seq
Reverse (-)
17974782 .. 17975105
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15350.1

Sequence Viewer

Length: 324 bp
ATGATGCCAAATTGGTGTGCTTTCTGCATCCTTGTCTGTCAAAATTATTCTTGCAGATTATTCCCTAGTGTTGAAGCTGTGATTTGTGTTGCTTTTTTAGTTAAAATGAGATTCATTTCGGTTAATTCTTTAAAACTAAACTTTTCAGGTGCGATGTTGACTGCTGGTGTGCTCACCGCCGGCTTAATCAGTTTCAGGCAAGGCAATTCTCAGTTGGGCCAGAAGCTAATGAGAGCTCGTGTCGTTGTCCAAGGCGCCACTGTGGCTCTTATGGTTGGCAGTGCATACTACTACGGGGATAATCCGTGGAAAAAGGCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

108

Amino Acids

11.72

Weight (kDa)

9.67

Isoelectric Point (pI)

18.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 50 - 93 7.5e-15 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016660)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48030 AT3G48030
fragaria_vesca FvH4_5g05020
malus_domestica MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica Prupe.5G177100_v2.0.a1
pyrus_communis pycom14g15350
rosa_chinensis RchiOBHm_Chr7g0194021
rosa_roxburghii Rroxscaffold_3G00261610
rosa_rugosa Rorug07G0013200
rosa_samantha Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana Rw7G011990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 255
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 3 cut(s) 77, 226, 236
AluI AGCT 3 cut(s) 77, 226, 236
Alw21I GWGCWC 2 cut(s) 174, 238
AoxI GGCC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 166
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 2 cut(s) 174, 238
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 250, 305
Bse118I RCCGGY 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 250, 305
BseGI GGATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 174, 238
BsiSI CCGG 1 cut(s) 180
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 174, 238
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 250, 305
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 305
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 258, 286
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 217
CviJI RGCY 6 cut(s) 77, 183, 219, 226, 236, 266
CviKI_1 RGCY 6 cut(s) 77, 183, 219, 226, 236, 266
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 238
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 2 cut(s) 272, 286
FokI GGATG 1 cut(s) 14
FriOI GRGCYC 1 cut(s) 238
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 27, 54, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 1 cut(s) 255
KasI GGCGCC 1 cut(s) 254
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 132, 150, 181, 193, 233
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 174, 238
MluCI AATT 4 cut(s) 10, 43, 124, 205
Mly113I GGCGCC 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 5 cut(s) 102, 123, 131, 185, 322
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 263
NaeI GCCGGC 1 cut(s) 181
NarI GGCGCC 1 cut(s) 255
NgoMIV GCCGGC 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 111
PluTI GGCGCC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 5 cut(s) 102, 123, 131, 185, 322
Sau96I GGNCC 1 cut(s) 217
SduI GDGCHC 2 cut(s) 174, 238
SetI ASST 4 cut(s) 79, 151, 228, 238
SfaNI GCATC 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 256
Sse9I AATT 4 cut(s) 10, 43, 124, 205
SsiI CCGC 1 cut(s) 177
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 238
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 262
TasI AATT 4 cut(s) 10, 43, 124, 205
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 5 cut(s) 102, 123, 131, 185, 322
Tru9I TTAA 5 cut(s) 102, 123, 131, 185, 322
TscAI CASTG 2 cut(s) 265, 286
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 265, 286
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.