MD06G1177900.v1.1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016660
Physical Location & Seq
Reverse (-)
31819722 .. 31822029
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1177900.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGAGAAGATGAGTGAGGTGGACCCCACGTTAGAAGTATTCTACGAGGAGAAGAAGCGGGTCCGGAACCCTTGGGTACCAGTTGGGGCTATGTTGACTGCTGGCGTGCTCACCGCCGGCTTAATCAGTTTCAGGCAAGGCAATTCTCAGTTAGGCCAGAAGCTAATGAGAGCTCGTGTCGTCGTCCAGGGTGCCACAGTGGCTCTTATGGTTGGCAGTGCATACTACTACGGGGATAATCCGTGGAAAAAATCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

87

Amino Acids

9.54

Weight (kDa)

9.63

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 23 - 72 1.8e-20 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016660)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48030 AT3G48030
fragaria_vesca FvH4_5g05020
malus_domestica MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica Prupe.5G177100_v2.0.a1
pyrus_communis pycom14g15350
rosa_chinensis RchiOBHm_Chr7g0194021
rosa_roxburghii Rroxscaffold_3G00261610
rosa_rugosa Rorug07G0013200
rosa_samantha Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana Rw7G011990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 76, 191
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 2 cut(s) 58, 114
AfaI GTAC 1 cut(s) 78
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 163, 173
AluI AGCT 2 cut(s) 163, 173
Alw21I GWGCWC 2 cut(s) 111, 175
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 22, 61
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 22, 61
BanI GGYRCC 2 cut(s) 76, 191
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 111, 175
BciT130I CCWGG 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 2 cut(s) 22, 61
BmgT120I GGNCC 2 cut(s) 22, 61
BmiI GGNNCC 5 cut(s) 24, 62, 68, 78, 193
BmrFI CCNGG 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 71, 187, 242
BsaWI WCCGGW 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 63
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 71, 187, 242
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 2 cut(s) 76, 191
BsiHKAI GWGCWC 2 cut(s) 111, 175
BsiSI CCGG 2 cut(s) 64, 117
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 111, 175
Bsp13I TCCGGA 1 cut(s) 63
BspACI CCGC 2 cut(s) 58, 114
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 160
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 24, 62, 68, 78, 193
BspT107I GGYRCC 2 cut(s) 76, 191
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 71, 187, 242
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 103, 107, 118
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 204, 223
Cac8I GCNNGC 3 cut(s) 103, 107, 118
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 22, 61
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 6 cut(s) 89, 120, 156, 163, 173, 203
CviKI_1 RGCY 6 cut(s) 89, 120, 156, 163, 173, 203
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 22, 61
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 3 cut(s) 92, 209, 223
FauI CCCGC 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 64, 117
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HpaII CCGG 2 cut(s) 64, 117
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 22, 96
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 22, 96
Hpy99I CGWCG 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 63
KpnI GGTACC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
LpnPI CCDG 8 cut(s) 77, 87, 93, 118, 130, 170, 173, 200
MaeII ACGT 1 cut(s) 29
MboII GAAGA 2 cut(s) 19, 64
MhlI GDGCHC 2 cut(s) 111, 175
MluCI AATT 1 cut(s) 142
MnlI CCTC 2 cut(s) 10, 40
MroI TCCGGA 1 cut(s) 63
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 122, 259
MspI CCGG 2 cut(s) 64, 117
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 200
NaeI GCCGGC 1 cut(s) 118
NgoMIV GCCGGC 1 cut(s) 116
NlaIV GGNNCC 5 cut(s) 24, 62, 68, 78, 193
PdiI GCCGGC 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 5 cut(s) 24, 62, 68, 78, 193
PspPI GGNCC 2 cut(s) 22, 61
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 122, 259
Sau96I GGNCC 2 cut(s) 22, 61
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 2 cut(s) 111, 175
SetI ASST 4 cut(s) 21, 32, 165, 175
SinI GGWCC 2 cut(s) 22, 61
Sse9I AATT 1 cut(s) 142
SsiI CCGC 2 cut(s) 58, 114
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 142
Tru1I TTAA 2 cut(s) 122, 259
Tru9I TTAA 2 cut(s) 122, 259
TscAI CASTG 2 cut(s) 204, 223
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 204, 223
VpaK11BI GGWCC 2 cut(s) 22, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.