Rw7G011990

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016660
Physical Location & Seq
Reverse (-)
11381754 .. 11383129
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011990.1

Sequence Viewer

Length: 258 bp
ATGGAGAAGATGGGGGAGGTTGAGCCCAGTTTGGAAGTTTTCTTTGAGGAGAAGAAGAGGAAGAGGAACCCTTTTGTACCGGTTGGGGCCTTTTTGACTGCTGGTGTGCTCACAGCCGGCTTAATCAGCTTCAGGCAAGGGAATTCTCAGTTAGGCCAGAAGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCCACAGTAGCACTTATGGTTGGCACCGCATACTACTACGGGGAGAATCCATGGAAGAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

85

Amino Acids

9.44

Weight (kDa)

9.82

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 23 - 72 6.9e-21 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016660)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48030 AT3G48030
fragaria_vesca FvH4_5g05020
malus_domestica MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica Prupe.5G177100_v2.0.a1
pyrus_communis pycom14g15350
rosa_chinensis RchiOBHm_Chr7g0194021
rosa_roxburghii Rroxscaffold_3G00261610
rosa_rugosa Rorug07G0013200
rosa_samantha Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana Rw7G011990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 191, 215
AciI CCGC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 1 cut(s) 78
AgeI ACCGGT 1 cut(s) 79
AluBI AGCT 3 cut(s) 129, 163, 173
AluI AGCT 3 cut(s) 129, 163, 173
Alw21I GWGCWC 2 cut(s) 111, 175
AoxI GGCC 2 cut(s) 87, 154
ApoI RAATTY 1 cut(s) 142
AsiGI ACCGGT 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 87
BanI GGYRCC 2 cut(s) 191, 215
BanII GRGCYC 2 cut(s) 27, 175
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 111, 175
BccI CCATC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 4 cut(s) 68, 88, 193, 217
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 187, 242
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 2 cut(s) 79, 116
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 187, 242
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 89, 156
BshNI GGYRCC 2 cut(s) 191, 215
BshTI ACCGGT 1 cut(s) 79
BsiHKAI GWGCWC 2 cut(s) 111, 175
BsiSI CCGG 2 cut(s) 80, 117
BsnI GGCC 2 cut(s) 89, 156
Bsp1286I GDGCHC 3 cut(s) 27, 111, 175
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 89, 156
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 4 cut(s) 68, 88, 193, 217
BspT107I GGYRCC 2 cut(s) 191, 215
BsrFI RCCGGY 2 cut(s) 79, 116
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 2 cut(s) 79, 116
BssECI CCNNGG 2 cut(s) 187, 242
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 187, 242
Bst2BI CACGAG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 50, 56
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 126, 200
BsuRI GGCC 2 cut(s) 89, 156
BtgI CCRYGG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 2 cut(s) 79, 116
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 1 cut(s) 243
CviJI RGCY 8 cut(s) 25, 89, 116, 120, 129, 156, 163, 173
CviKI_1 RGCY 8 cut(s) 25, 89, 116, 120, 129, 156, 163, 173
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 50, 56
EarI CTCTTC 2 cut(s) 50, 56
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 187, 242
Eco24I GRGCYC 2 cut(s) 27, 175
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 142
EcoT14I CCWWGG 2 cut(s) 187, 242
EcoT38I GRGCYC 2 cut(s) 27, 175
ErhI CCWWGG 2 cut(s) 187, 242
FaeI CATG 1 cut(s) 246
FaiI YATR 3 cut(s) 209, 223, 244
FatI CATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 27, 175
HaeIII GGCC 2 cut(s) 89, 156
HapII CCGG 2 cut(s) 80, 117
Hin1II CATG 1 cut(s) 246
HinfI GANTC 1 cut(s) 238
HpaII CCGG 2 cut(s) 80, 117
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 200
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 246
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 40, 87, 93, 118, 130, 170
MboII GAAGA 4 cut(s) 19, 64, 67, 73
MhlI GDGCHC 3 cut(s) 27, 111, 175
MluCI AATT 1 cut(s) 142
MnlI CCTC 4 cut(s) 10, 40, 51, 57
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 122, 256
MspI CCGG 2 cut(s) 80, 117
MwoI GCNNNNNNNGC 2 cut(s) 126, 200
NaeI GCCGGC 1 cut(s) 118
NcoI CCATGG 1 cut(s) 242
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 4 cut(s) 68, 88, 193, 217
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 175
PspN4I GGNNCC 4 cut(s) 68, 88, 193, 217
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 122, 256
Sau96I GGNCC 1 cut(s) 87
SduI GDGCHC 3 cut(s) 27, 111, 175
SetI ASST 5 cut(s) 21, 131, 165, 175, 193
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 219
SstI GAGCTC 1 cut(s) 175
StyI CCWWGG 2 cut(s) 187, 242
TaaI ACNGT 1 cut(s) 199
TasI AATT 1 cut(s) 142
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 122, 256
Tru9I TTAA 2 cut(s) 122, 256
XapI RAATTY 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.