Prupe.5G177100_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016660
Physical Location & Seq
Reverse (-)
14985870 .. 14988844
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G177100.1

Sequence Viewer

Length: 252 bp
ATGGAGAAGGTTGAGCCCACTTTAGAAGTATTCTATGAGGAGAAGAAGCGGGTCAAGAACCCTTGGGTACCAGTTGGGGCGTTGTTGACTGCTGGTGTGCTCACGGCCGGCTTGATCAGTTTCAGGCAAGGCAATTCTCAGCTGGGGCAGAAGCTAATGAGAGCTCGTGTGGTTGCCCAAGGTGGCACAGTGGCGCTTATGGTTGGCTCTGCATACTACTACGGGGAGAATCCGTGGAAAAAATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

84

Amino Acids

9.13

Weight (kDa)

9.75

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016660)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48030 AT3G48030
fragaria_vesca FvH4_5g05020
malus_domestica MD06G1177900.v1.1 MD14G1184500.v1.1
prunus_persica Prupe.5G177100_v2.0.a1
pyrus_communis pycom14g15350
rosa_chinensis RchiOBHm_Chr7g0194021
rosa_roxburghii Rroxscaffold_3G00261610
rosa_rugosa Rorug07G0013200
rosa_samantha Rh7AG140500 Rh7BG141000 Rh7DG141900
rosa_wichuraiana Rw7G011990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 69
AluBI AGCT 3 cut(s) 142, 154, 164
AluI AGCT 3 cut(s) 142, 154, 164
Alw21I GWGCWC 2 cut(s) 102, 166
AoxI GGCC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 2 cut(s) 18, 166
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 102, 166
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 62, 178, 233
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 62, 178, 233
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 53
BseX3I CGGCCG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 102, 166
BsiSI CCGG 1 cut(s) 108
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 18, 102, 166
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 62, 178, 233
BssMI GATC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 62, 178
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 108
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 1 cut(s) 68
CviJI RGCY 7 cut(s) 16, 107, 111, 142, 154, 164, 207
CviKI_1 RGCY 7 cut(s) 16, 107, 111, 142, 154, 164, 207
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 62, 178
Eco24I GRGCYC 2 cut(s) 18, 166
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 62, 178
EcoT38I GRGCYC 2 cut(s) 18, 166
ErhI CCWWGG 2 cut(s) 62, 178
FaiI YATR 3 cut(s) 36, 200, 214
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 114
FriOI GRGCYC 2 cut(s) 18, 166
GlaI GCGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 138
HspAI GCGC 1 cut(s) 194
KpnI GGTACC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 78, 84, 109, 121, 128
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 18, 102, 166
MluCI AATT 1 cut(s) 133
MnlI CCTC 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 108
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 1 cut(s) 114
NgoMIV GCCGGC 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 250
Sau3AI GATC 1 cut(s) 114
SduI GDGCHC 3 cut(s) 18, 102, 166
SetI ASST 5 cut(s) 12, 144, 156, 166, 184
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 49
SstI GAGCTC 1 cut(s) 166
StyI CCWWGG 2 cut(s) 62, 178
TaaI ACNGT 1 cut(s) 190
TasI AATT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.