AT3G48040
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013804
Physical Location & Seq
Forward (+)
17731337 .. 17733513
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48040.2

Sequence Viewer

Length: 627 bp
ATGGCTTCGAGTGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGGAAAAACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAACAGTTTTTGACAACTTTAGTGTTAATGTTGTGGTTGAAGGCATCACTGTGAACTTAGGCCTTTGGGACACTGCCGGGCAAGAAGACTATAACAGACTAAGGCCTTTAAGTTACAGAGGAGCAGATGTTTTTGTGTTGGCTTTCTCATTGATCAGCCGAGCTAGCTATGAGAATGTGTTTAAAAAGTGGATCCCTGAACTCCAACACTTTGCACCAGGAGTCCCCATTGTGCTTGTTGGTACCAAAATGGATCTTCGTGAAGATAGACATTACTTGTCTGATCATCCTGGACTGTCCCCGGTAACTACATCACAGGGAGAGGAACTCCGCAAGCATATCGGAGCGACTTATTACATTGAATGTAGCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATTAAAGTAGTAATTAAACCAGCAGTGAAACAAAAGGAGAAGAAGAAGAAGCAGAAGCCTCGCAGCGGATGTCTCTCAAACATTCTGTGTGGGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023057 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045229 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097305 GO:0097306 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

208

Amino Acids

23.07

Weight (kDa)

9.24

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 10 - 166 5.1e-45 Ras family
Roc PF08477 10 - 123 1.9e-22 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48040 AT3G48040 AT5G62880 AT5G62880
fragaria_vesca FvH4_5g16650 FvH4_5g16650
malus_domestica MD14G1184700.v1.1
prunus_persica Prupe.5G177400_v2.0.a1 Prupe.5G177400_v2.0.a1
pyrus_communis pycom14g15370
rosa_chinensis RchiOBHm_Chr7g0179501
rosa_laevigata RLG00000005349
rosa_multiflora Rmu_sc0000735.1_g000009
rosa_roxburghii Rroxscaffold_3G00273940
rosa_rugosa Rorug06G0424900
rosa_samantha Rh7CG025400
rosa_wichuraiana Rw7G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 50, 356
AciI CCGC 2 cut(s) 445, 591
AclWI GGATC 3 cut(s) 301, 314, 375
AcsI RAATTY 2 cut(s) 20, 95
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 3 cut(s) 18, 155, 476
AjnI CCWGG 2 cut(s) 331, 403
AluBI AGCT 3 cut(s) 278, 282, 483
AluI AGCT 3 cut(s) 278, 282, 483
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 3 cut(s) 301, 314, 375
AoxI GGCC 2 cut(s) 175, 218
ApeKI GCWGC 2 cut(s) 521, 588
ApoI RAATTY 2 cut(s) 20, 95
Asp718I GGTACC 1 cut(s) 356
AsuC2I CCSGG 2 cut(s) 193, 416
AsuNHI GCTAGC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 50, 356
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 508, 600
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 38, 494
BcgI CGANNNNNNTGC 4 cut(s) 436, 470, 566, 600
BciT130I CCWGG 2 cut(s) 333, 405
BclI TGATCA 2 cut(s) 267, 397
BcnI CCSGG 2 cut(s) 193, 416
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 87, 279
BisI GCNGC 2 cut(s) 522, 589
BlsI GCNGC 2 cut(s) 523, 590
Bme1390I CCNGG 4 cut(s) 193, 333, 405, 416
BmiI GGNNCC 3 cut(s) 52, 308, 358
BmrFI CCNGG 4 cut(s) 193, 333, 405, 416
BmsI GCATC 2 cut(s) 168, 508
BmtI GCTAGC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpuMI CCSGG 2 cut(s) 193, 416
BsaJI CCNNGG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 590
BseBI CCWGG 2 cut(s) 333, 405
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 400, 599
BseLI CCNNNNNNNGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 508, 600
BshFI GGCC 2 cut(s) 177, 220
BshNI GGYRCC 2 cut(s) 50, 356
BsiSI CCGG 2 cut(s) 192, 416
BslFI GGGAC 3 cut(s) 197, 323, 397
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 197, 323, 397
BsnI GGCC 2 cut(s) 177, 220
Bsp143I GATC 4 cut(s) 267, 306, 367, 397
BspACI CCGC 2 cut(s) 445, 591
BspANI GGCC 2 cut(s) 177, 220
BspLI GGNNCC 3 cut(s) 52, 308, 358
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 3 cut(s) 301, 314, 375
BspT107I GGYRCC 2 cut(s) 50, 356
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 4 cut(s) 267, 306, 367, 397
Bst2UI CCWGG 2 cut(s) 333, 405
Bst4CI ACNGT 4 cut(s) 40, 121, 166, 411
BstC8I GCNNGC 2 cut(s) 280, 449
BstDEI CTNAG 2 cut(s) 172, 215
BstF5I GGATG 2 cut(s) 400, 599
BstKTI GATC 4 cut(s) 270, 309, 370, 400
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 4 cut(s) 267, 306, 367, 397
BstMWI GCNNNNNNNGC 3 cut(s) 11, 87, 279
BstNI CCWGG 2 cut(s) 333, 405
BstSCI CCNGG 4 cut(s) 191, 331, 403, 414
BstV1I GCAGC 2 cut(s) 508, 600
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 306, 367
BstYI RGATCY 2 cut(s) 306, 367
BsuRI GGCC 2 cut(s) 177, 220
BtsCI GGATG 2 cut(s) 400, 599
BtsI GCAGTG 2 cut(s) 186, 555
BtsIMutI CAGTG 3 cut(s) 162, 186, 555
Cac8I GCNNGC 2 cut(s) 280, 449
Csp6I GTAC 1 cut(s) 357
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 172, 215
DpnI GATC 4 cut(s) 269, 308, 369, 399
DpnII GATC 4 cut(s) 267, 306, 367, 397
DraI TTTAAA 1 cut(s) 298
Eco147I AGGCCT 2 cut(s) 177, 220
EcoRII CCWGG 2 cut(s) 331, 403
FaiI YATR 5 cut(s) 71, 113, 207, 285, 453
FaqI GGGAC 3 cut(s) 197, 323, 397
FbaI TGATCA 2 cut(s) 267, 397
Fnu4HI GCNGC 2 cut(s) 522, 589
FokI GGATG 2 cut(s) 387, 606
Fsp4HI GCNGC 2 cut(s) 522, 589
FspBI CTAG 2 cut(s) 87, 279
GluI GCNGC 2 cut(s) 522, 589
HaeIII GGCC 2 cut(s) 177, 220
HapII CCGG 2 cut(s) 192, 416
HinfI GANTC 1 cut(s) 336
HpaII CCGG 2 cut(s) 192, 416
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 397, 458
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 4 cut(s) 40, 121, 166, 411
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 87, 279
HpyF3I CTNAG 2 cut(s) 172, 215
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 2 cut(s) 267, 397
Kzo9I GATC 4 cut(s) 267, 306, 367, 397
LmnI GCTCC 2 cut(s) 236, 458
LpnPI CCDG 9 cut(s) 205, 318, 324, 345, 390, 416, 417, 429, 558
Lsp1109I GCAGC 2 cut(s) 508, 600
LweI GCATC 2 cut(s) 168, 508
MaeI CTAG 2 cut(s) 87, 279
MaeIII GTNAC 3 cut(s) 34, 227, 418
MalI GATC 4 cut(s) 269, 308, 369, 399
MboI GATC 4 cut(s) 267, 306, 367, 397
MboII GAAGA 6 cut(s) 212, 362, 389, 577, 580, 583
MflI RGATCY 2 cut(s) 306, 367
MluCI AATT 4 cut(s) 20, 95, 537, 622
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 3 cut(s) 22, 37, 343
MnlI CCTC 3 cut(s) 227, 430, 594
MseI TTAA 5 cut(s) 141, 224, 297, 528, 540
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 2 cut(s) 192, 416
MspR9I CCNGG 4 cut(s) 193, 333, 405, 416
MvaI CCWGG 2 cut(s) 333, 405
MwoI GCNNNNNNNGC 3 cut(s) 11, 87, 279
NciI CCSGG 2 cut(s) 193, 416
NdeII GATC 4 cut(s) 267, 306, 367, 397
NheI GCTAGC 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 52, 308, 358
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 34
PceI AGGCCT 2 cut(s) 177, 220
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 2 cut(s) 523, 590
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 331, 403
PspGI CCWGG 2 cut(s) 331, 403
PspN4I GGNNCC 3 cut(s) 52, 308, 358
PsuI RGATCY 2 cut(s) 306, 367
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 5 cut(s) 141, 224, 297, 528, 540
SatI GCNGC 2 cut(s) 522, 589
Sau3AI GATC 4 cut(s) 267, 306, 367, 397
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 4 cut(s) 193, 333, 405, 416
SetI ASST 3 cut(s) 280, 284, 485
SfaNI GCATC 2 cut(s) 168, 508
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 4 cut(s) 20, 95, 537, 622
SseBI AGGCCT 2 cut(s) 177, 220
SsiI CCGC 2 cut(s) 445, 591
SspMI CTAG 2 cut(s) 87, 279
StuI AGGCCT 2 cut(s) 177, 220
StyD4I CCNGG 4 cut(s) 191, 331, 403, 414
TaaI ACNGT 4 cut(s) 40, 121, 166, 411
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 20, 95, 537, 622
Tru1I TTAA 5 cut(s) 141, 224, 297, 528, 540
Tru9I TTAA 5 cut(s) 141, 224, 297, 528, 540
TscAI CASTG 3 cut(s) 169, 193, 555
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 521, 588
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 3 cut(s) 169, 193, 555
XapI RAATTY 2 cut(s) 20, 95
XspI CTAG 2 cut(s) 87, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.