RLG00000005349
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013804
Physical Location & Seq
Reverse (-)
66994259 .. 66997938
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005349

Sequence Viewer

Length: 729 bp
ATGGCTTCAAGCGCTTCCAAGTTCATCAAGTGTGTTACAGTTGGAGATGGAGCTGTGGGGAAGACCTGTATGCTCATTTGCTACACCAGTAACAAATTTCCCACTGATTATGTTCCCACAGTGTTTGATAACTTCAGCGCAAATGTGGTGGTTGAATCCACAACAGTGAACTTAGGCCTCTGGGACACAGCTGGGCAAGAAGATTACAATCGCCTAAGGCCATTGAGCTACAGAGGTGCAGATGTCTTTGTCCTAGCTTTCTCATTAGTTAGTCGCGCCAGCTATGAGAACATACTGAAAAAGTGGATCCCTGAACTGCAGCATTATGCTCCTGGAGTTCCAGTAGTACTTGCTGGCACCAAACTAGATCTTCGAGAGGATAAGCACTATTTGGCTGATCACCCAGGGTTGGTACCTGTTACTAGCGCACAGGGCGAGGAGCTGCGCAAACAGATTGGTGCTGCATATTATATAGAATGCAGCTCAAAAACTCAGCAGTTTACTAGCATTGTGTCCCACACTGAGCTTCAAGATTTCATGGATGGCTTAGCTTACATATGCTATTCGAATTTAAGACCAACATCGTTTGTGGGCGAAGACTGGTCTGTCTCAAATGAAGGCACCAACTTGATAGCTGCCATCTTGATCTATGACTATGTGCCACTTCTTGGAGGTTCTTCACCGCCAAGCTGTTTGGATCCTATATCGAGAAAATGGGTACACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023057 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045229 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097305 GO:0097306 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

243

Amino Acids

26.68

Weight (kDa)

5.34

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 10 - 166 1.8e-43 Ras family
Roc PF08477 10 - 123 7.2e-22 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48040 AT3G48040 AT5G62880 AT5G62880
fragaria_vesca FvH4_5g16650 FvH4_5g16650
malus_domestica MD14G1184700.v1.1
prunus_persica Prupe.5G177400_v2.0.a1 Prupe.5G177400_v2.0.a1
pyrus_communis pycom14g15370
rosa_chinensis RchiOBHm_Chr7g0179501
rosa_laevigata RLG00000005349
rosa_multiflora Rmu_sc0000735.1_g000009
rosa_roxburghii Rroxscaffold_3G00273940
rosa_rugosa Rorug06G0424900
rosa_samantha Rh7CG025400
rosa_wichuraiana Rw7G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
Acc16I TGCGCA 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 3 cut(s) 356, 412, 620
AccB7I CCANNNNNTGG 1 cut(s) 668
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 683
AclWI GGATC 4 cut(s) 301, 314, 692, 705
AcsI RAATTY 2 cut(s) 95, 568
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 3 cut(s) 348, 414, 720
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 409, 668
AgsI TTSAA 3 cut(s) 9, 155, 530
AjnI CCWGG 2 cut(s) 331, 403
AleI CACNNNNGTG 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 4 cut(s) 301, 314, 692, 705
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 175, 218
ApeKI GCWGC 5 cut(s) 319, 442, 461, 480, 635
ApoI RAATTY 2 cut(s) 95, 568
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 5 cut(s) 14, 140, 278, 428, 447
AsuHPI GGTGA 2 cut(s) 392, 672
AsuII TTCGAA 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 215
BaeI ACNNNNGTAYC 1 cut(s) 710
BamHI GGATCC 2 cut(s) 306, 697
BanI GGYRCC 3 cut(s) 356, 412, 620
BbsI GAAGAC 2 cut(s) 68, 603
BbvI GCAGC 5 cut(s) 331, 429, 448, 492, 622
BccI CCATC 3 cut(s) 41, 536, 647
BciT130I CCWGG 2 cut(s) 333, 405
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 4 cut(s) 254, 365, 423, 504
BfmI CTRYAG 2 cut(s) 229, 317
BfoI RGCGCY 1 cut(s) 15
BglII AGATCT 1 cut(s) 367
BisI GCNGC 5 cut(s) 320, 443, 462, 481, 636
BlpI GCTNAGC 1 cut(s) 547
BlsI GCNGC 5 cut(s) 321, 444, 463, 482, 637
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 333, 405
BmiI GGNNCC 5 cut(s) 308, 358, 414, 622, 699
BmrFI CCNGG 2 cut(s) 333, 405
BpiI GAAGAC 2 cut(s) 68, 603
BpmI CTGGAG 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 547
Bpu14I TTCGAA 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 403, 404
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 668
Bse1I ACTGG 3 cut(s) 87, 341, 605
Bse21I CCTNAGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 333, 405
BseDI CCNNGG 2 cut(s) 403, 404
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 409, 668
BseMII CTCAG 2 cut(s) 506, 513
BseNI ACTGG 3 cut(s) 87, 341, 605
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 5 cut(s) 331, 429, 448, 492, 622
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 177, 220
BshNI GGYRCC 3 cut(s) 356, 412, 620
BslFI GGGAC 2 cut(s) 197, 499
BslI CCNNNNNNNGG 2 cut(s) 409, 668
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 2 cut(s) 197, 499
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 2 cut(s) 177, 220
Bsp119I TTCGAA 1 cut(s) 566
Bsp143I GATC 5 cut(s) 306, 367, 397, 645, 697
Bsp1720I GCTNAGC 1 cut(s) 547
BspACI CCGC 1 cut(s) 683
BspANI GGCC 2 cut(s) 177, 220
BspCNI CTCAG 2 cut(s) 505, 514
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 5 cut(s) 308, 358, 414, 622, 699
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 4 cut(s) 301, 314, 692, 705
BspT104I TTCGAA 1 cut(s) 566
BspT107I GGYRCC 3 cut(s) 356, 412, 620
BsrI ACTGG 3 cut(s) 87, 341, 605
BssECI CCNNGG 2 cut(s) 403, 404
BssMI GATC 5 cut(s) 306, 367, 397, 645, 697
Bst2UI CCWGG 2 cut(s) 333, 405
Bst4CI ACNGT 3 cut(s) 40, 121, 166
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 280, 355
BstDEI CTNAG 5 cut(s) 172, 215, 492, 522, 547
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 5 cut(s) 14, 140, 278, 428, 447
BstKTI GATC 5 cut(s) 309, 370, 400, 648, 700
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 5 cut(s) 306, 367, 397, 645, 697
BstMWI GCNNNNNNNGC 2 cut(s) 11, 432
BstNI CCWGG 2 cut(s) 333, 405
BstSCI CCNGG 2 cut(s) 331, 403
BstSFI CTRYAG 2 cut(s) 229, 317
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 5 cut(s) 331, 429, 448, 492, 622
BstV2I GAAGAC 2 cut(s) 68, 603
BstX2I RGATCY 3 cut(s) 306, 367, 697
BstYI RGATCY 3 cut(s) 306, 367, 697
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 177, 220
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 102, 126, 171, 519
Cac8I GCNNGC 2 cut(s) 280, 355
CfoI GCGC 5 cut(s) 14, 140, 278, 428, 447
Csp6I GTAC 3 cut(s) 347, 413, 719
CspCI CAANNNNNGTGG 4 cut(s) 106, 129, 141, 164
CviAII CATG 1 cut(s) 538
CviQI GTAC 3 cut(s) 347, 413, 719
DdeI CTNAG 5 cut(s) 172, 215, 492, 522, 547
DpnI GATC 5 cut(s) 308, 369, 399, 647, 699
DpnII GATC 5 cut(s) 306, 367, 397, 645, 697
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
Eco147I AGGCCT 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 331, 403
FaeI CATG 1 cut(s) 541
FaqI GGGAC 2 cut(s) 197, 499
FatI CATG 1 cut(s) 537
FauNDI CATATG 1 cut(s) 557
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 5 cut(s) 320, 443, 462, 481, 636
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 5 cut(s) 320, 443, 462, 481, 636
FspBI CTAG 4 cut(s) 254, 365, 423, 504
FspI TGCGCA 1 cut(s) 446
GlaI GCGC 5 cut(s) 13, 139, 277, 427, 446
GluI GCNGC 5 cut(s) 320, 443, 462, 481, 636
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 177, 220
HhaI GCGC 5 cut(s) 14, 140, 278, 428, 447
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 5 cut(s) 12, 138, 276, 426, 445
HinP1I GCGC 5 cut(s) 12, 138, 276, 426, 445
HinfI GANTC 1 cut(s) 155
HphI GGTGA 2 cut(s) 392, 672
Hpy166II GTNNAC 3 cut(s) 169, 501, 721
Hpy188III TCNNGA 4 cut(s) 374, 530, 643, 708
Hpy8I GTNNAC 3 cut(s) 169, 501, 721
HpyAV CCTTC 1 cut(s) 611
HpyCH4III ACNGT 3 cut(s) 40, 121, 166
HpyCH4V TGCA 4 cut(s) 239, 319, 464, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 432
HpyF3I CTNAG 5 cut(s) 172, 215, 492, 522, 547
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 5 cut(s) 12, 138, 276, 426, 445
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 5 cut(s) 306, 367, 397, 645, 697
LmnI GCTCC 3 cut(s) 50, 334, 439
Lsp1109I GCAGC 5 cut(s) 331, 429, 448, 492, 622
MaeI CTAG 4 cut(s) 254, 365, 423, 504
MaeIII GTNAC 3 cut(s) 34, 89, 418
MalI GATC 5 cut(s) 308, 369, 399, 647, 699
MboI GATC 5 cut(s) 306, 367, 397, 645, 697
MboII GAAGA 5 cut(s) 73, 212, 362, 608, 669
MflI RGATCY 3 cut(s) 306, 367, 697
MluCI AATT 2 cut(s) 95, 568
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 5 cut(s) 188, 227, 370, 430, 665
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 333, 405
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 2 cut(s) 333, 405
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 11, 432
NdeI CATATG 1 cut(s) 557
NdeII GATC 5 cut(s) 306, 367, 397, 645, 697
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 5 cut(s) 308, 358, 414, 622, 699
NsbI TGCGCA 1 cut(s) 446
NspV TTCGAA 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 404
PceI AGGCCT 1 cut(s) 177
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 5 cut(s) 321, 444, 463, 482, 637
Psp6I CCWGG 2 cut(s) 331, 403
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 331, 403
PspN4I GGNNCC 5 cut(s) 308, 358, 414, 622, 699
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 3 cut(s) 306, 367, 697
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 348, 414, 720
RsaNI GTAC 3 cut(s) 347, 413, 719
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 5 cut(s) 320, 443, 462, 481, 636
Sau3AI GATC 5 cut(s) 306, 367, 397, 645, 697
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 333, 405
SfcI CTRYAG 2 cut(s) 229, 317
SfuI TTCGAA 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 2 cut(s) 95, 568
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 1 cut(s) 683
SspMI CTAG 4 cut(s) 254, 365, 423, 504
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 331, 403
TaaI ACNGT 3 cut(s) 40, 121, 166
TaqI TCGA 3 cut(s) 373, 566, 707
TasI AATT 2 cut(s) 95, 568
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 4 cut(s) 109, 126, 171, 526
TseI GCWGC 5 cut(s) 319, 442, 461, 480, 635
TspDTI ATGAA 3 cut(s) 13, 526, 630
TspRI CASTG 4 cut(s) 109, 126, 171, 526
Van91I CCANNNNNTGG 1 cut(s) 668
XapI RAATTY 2 cut(s) 95, 568
XspI CTAG 4 cut(s) 254, 365, 423, 504
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.