Rmu_sc0000735.1_g000009
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000735.1
OG0013804
Physical Location & Seq
Reverse (-)
45138 .. 49103
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000735.1_g000009.1.cds

Sequence Viewer

Length: 636 bp
atggcttcaagcgcttccaagttcatcaagtgtgtaacagttggagatggagctgtggggaagacctgtatgctcatttgttacaccagtaacaagtttcccactgattatgttcccacagtgtttgataacttcagcgcaaatgtggtggttgaatctacaacagtgaacttaggcctctgggacacagctgggcaagaagattacaatcgcctaaggccattgagctacagaggtgcagatgtctttgtcctagctttctcattagttagtcgtgccagctatgagaacatactgaaaaagtggatccctgaactgcagcattatgctcctggagttccagtagtacttgctggcaccaaactagatcttcgagaggataagcactatttggctgatcacccagggttggtacctgttactagcgcacagggcgaggagctgcgcaaacagattggtgctgcatattatatagaatgcagctcaaaaactcagcagaatgtgaaagcagtttttgatgctgctatcagagtggttatcaagccaccacagaaacaaaaggagaaaaagaaaaagccacgtcgaggatgtctagtcaacatcgtttgtgggcgaaggctagtgtgtctcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023057 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045229 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097305 GO:0097306 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

211

Amino Acids

23.39

Weight (kDa)

9.35

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013804)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48040 AT3G48040 AT5G62880 AT5G62880
fragaria_vesca FvH4_5g16650 FvH4_5g16650
malus_domestica MD14G1184700.v1.1
prunus_persica Prupe.5G177400_v2.0.a1 Prupe.5G177400_v2.0.a1
pyrus_communis pycom14g15370
rosa_chinensis RchiOBHm_Chr7g0179501
rosa_laevigata RLG00000005349
rosa_multiflora Rmu_sc0000735.1_g000009
rosa_roxburghii Rroxscaffold_3G00273940
rosa_rugosa Rorug06G0424900
rosa_samantha Rh7CG025400
rosa_wichuraiana Rw7G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 356, 412
AclWI GGATC 2 cut(s) 301, 314
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 2 cut(s) 348, 414
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 409, 584
AgsI TTSAA 2 cut(s) 9, 155
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 331, 403
AluBI AGCT 7 cut(s) 53, 191, 228, 257, 282, 442, 483
AluI AGCT 7 cut(s) 53, 191, 228, 257, 282, 442, 483
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 301, 314
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 175, 218
ApeKI GCWGC 5 cut(s) 319, 442, 461, 480, 521
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 4 cut(s) 14, 140, 428, 447
AsuHPI GGTGA 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 356, 412
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 331, 429, 448, 492, 508
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 333, 405
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 5 cut(s) 254, 365, 423, 593, 620
BfmI CTRYAG 2 cut(s) 229, 317
BfoI RGCGCY 1 cut(s) 15
BglII AGATCT 1 cut(s) 367
BisI GCNGC 5 cut(s) 320, 443, 462, 481, 522
BlsI GCNGC 5 cut(s) 321, 444, 463, 482, 523
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 333, 405
BmgBI CACGTC 1 cut(s) 581
BmiI GGNNCC 3 cut(s) 308, 358, 414
BmrFI CCNGG 2 cut(s) 333, 405
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 403, 404
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 584
Bse1I ACTGG 2 cut(s) 87, 341
Bse21I CCTNAGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 333, 405
BseDI CCNNGG 2 cut(s) 403, 404
BseGI GGATG 1 cut(s) 593
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 409, 584
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 2 cut(s) 87, 341
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 5 cut(s) 331, 429, 448, 492, 508
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 177, 220
BshNI GGYRCC 2 cut(s) 356, 412
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 409, 584
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 2 cut(s) 177, 220
Bsp143I GATC 3 cut(s) 306, 367, 397
BspANI GGCC 2 cut(s) 177, 220
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 3 cut(s) 308, 358, 414
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 2 cut(s) 301, 314
BspT107I GGYRCC 2 cut(s) 356, 412
BsrI ACTGG 2 cut(s) 87, 341
BssECI CCNNGG 2 cut(s) 403, 404
BssMI GATC 3 cut(s) 306, 367, 397
Bst2UI CCWGG 2 cut(s) 333, 405
Bst4CI ACNGT 3 cut(s) 40, 121, 166
BstC8I GCNNGC 2 cut(s) 280, 355
BstDEI CTNAG 3 cut(s) 172, 215, 492
BstF5I GGATG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 4 cut(s) 14, 140, 428, 447
BstKTI GATC 3 cut(s) 309, 370, 400
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 3 cut(s) 306, 367, 397
BstMWI GCNNNNNNNGC 2 cut(s) 11, 432
BstNI CCWGG 2 cut(s) 333, 405
BstSCI CCNGG 2 cut(s) 331, 403
BstSFI CTRYAG 2 cut(s) 229, 317
BstV1I GCAGC 5 cut(s) 331, 429, 448, 492, 508
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 306, 367
BstYI RGATCY 2 cut(s) 306, 367
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 177, 220
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 3 cut(s) 102, 126, 171
Cac8I GCNNGC 2 cut(s) 280, 355
CfoI GCGC 4 cut(s) 14, 140, 428, 447
Csp6I GTAC 2 cut(s) 347, 413
CspCI CAANNNNNGTGG 4 cut(s) 106, 129, 141, 164
CviQI GTAC 2 cut(s) 347, 413
DdeI CTNAG 3 cut(s) 172, 215, 492
DpnI GATC 3 cut(s) 308, 369, 399
DpnII GATC 3 cut(s) 306, 367, 397
Eco147I AGGCCT 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 331, 403
FaiI YATR 8 cut(s) 71, 111, 285, 293, 327, 466, 471, 473
FaqI GGGAC 1 cut(s) 197
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 5 cut(s) 320, 443, 462, 481, 522
FokI GGATG 1 cut(s) 600
Fsp4HI GCNGC 5 cut(s) 320, 443, 462, 481, 522
FspBI CTAG 5 cut(s) 254, 365, 423, 593, 620
FspI TGCGCA 1 cut(s) 446
GlaI GCGC 4 cut(s) 13, 139, 427, 446
GluI GCNGC 5 cut(s) 320, 443, 462, 481, 522
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 177, 220
HhaI GCGC 4 cut(s) 14, 140, 428, 447
Hin6I GCGC 4 cut(s) 12, 138, 426, 445
HinP1I GCGC 4 cut(s) 12, 138, 426, 445
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 169, 598
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 169, 598
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 3 cut(s) 40, 121, 166
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 4 cut(s) 239, 319, 464, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 432
HpyF3I CTNAG 3 cut(s) 172, 215, 492
HpySE526I ACGT 1 cut(s) 580
HspAI GCGC 4 cut(s) 12, 138, 426, 445
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 306, 367, 397
LmnI GCTCC 3 cut(s) 50, 334, 439
Lsp1109I GCAGC 5 cut(s) 331, 429, 448, 492, 508
LweI GCATC 1 cut(s) 508
MaeI CTAG 5 cut(s) 254, 365, 423, 593, 620
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 4 cut(s) 34, 80, 89, 418
MalI GATC 3 cut(s) 308, 369, 399
MboI GATC 3 cut(s) 306, 367, 397
MboII GAAGA 3 cut(s) 73, 212, 362
MflI RGATCY 2 cut(s) 306, 367
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 5 cut(s) 188, 227, 370, 430, 578
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 333, 405
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 2 cut(s) 333, 405
MwoI GCNNNNNNNGC 2 cut(s) 11, 432
NdeII GATC 3 cut(s) 306, 367, 397
NlaIV GGNNCC 3 cut(s) 308, 358, 414
NsbI TGCGCA 1 cut(s) 446
PasI CCCWGGG 1 cut(s) 404
PceI AGGCCT 1 cut(s) 177
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 5 cut(s) 321, 444, 463, 482, 523
Psp6I CCWGG 2 cut(s) 331, 403
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 331, 403
PspN4I GGNNCC 3 cut(s) 308, 358, 414
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 2 cut(s) 306, 367
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 348, 414
RsaNI GTAC 2 cut(s) 347, 413
SatI GCNGC 5 cut(s) 320, 443, 462, 481, 522
Sau3AI GATC 3 cut(s) 306, 367, 397
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 333, 405
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 229, 317
SseBI AGGCCT 1 cut(s) 177
SspMI CTAG 5 cut(s) 254, 365, 423, 593, 620
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 331, 403
TaaI ACNGT 3 cut(s) 40, 121, 166
TaiI ACGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 373, 583
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 3 cut(s) 109, 126, 171
TseI GCWGC 5 cut(s) 319, 442, 461, 480, 521
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 3 cut(s) 109, 126, 171
XspI CTAG 5 cut(s) 254, 365, 423, 593, 620
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.