Rorug06G0424900
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006123
Physical Location & Seq
Forward (+)
56265439 .. 56268318
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0424900.1

Sequence Viewer

Length: 1029 bp
ATGGATGATGGTGGGCATCGTGAAAATGGAAGACTCAAAGCAGAACAGCAGTATAAAGCAGCTCAGGGTCAGTGGTTGATGCAACATCAACCACATCAACCATCGATGAAACAGATAATGGCCATAATGGCCGAGAGAGATGCAGCCATTCAAGACAGAAATTTGGCCTTCTCTGAGAAGAAGACTGCCCTTGCAGAGCGAGACATGGCATTCCTGCAGCGAGATGCAGCAATTGCGGAAAGAAATAATGCCATAATTGAACGAGACAATGCCATTGCAACACTTCAGTACCGAGAAAACTCCTCCTTAACCAGTGGCAATGTATCTTCATGTCCACCAGGATGCCAAATTTCACGTGGGATCAAACATATGCACAACCCGCAGCAGCATGTACATCATCTACCCCACATGAATGAAGCTTCATATGGTACAAGGGAGATGCACACAAACGATTCCCTGCCACTACCACCAGATCCTCCCACAGCTCCCAAGTCTAGGCAGACCAAACGACCAAAGGAGCCCAAGACAATGCCCCCAAACAAAAAATCGGCGAAATCTCCAAGGAAGGTCAAGAGGGAGAGCGAGGACTTGAACAAGATGACGTTTGACAGATTGCATGAGTGGAAGGGTGGTCAGGAAATGTGCGGTGGTGCTGAAGATCTTAACAAACAGTTAGTTGTGTCAAAGTCTGATTGGAAATGTCAGGACCTGGGCTTGAACCAGGTTGCATACGATGACTCCACCATGCCAGCACCGGTGTGCTCCTGCACTGGTGTTCTGAGGCAATGCTACAAGTGGGGAAACGGGGGTTGGCAATCCTCGTGTTGCACTACTACAATGTCAATATACCCACTGCCAGCAGTGCCCAATAAACGACATGCAAGAGTAGGTGGCCGGAAGATGAGCGGAAGTGCTTTCAACAAGTTAATTAGTCGACTGGCAGCTGAAGGCCATGATCTGTCGAATCCAGTTGACCTCAAGGACAACTGGGCCAAGCATGGAACAAATCGCTACATTACGATCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023057 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045229 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097305 GO:0097306 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

342

Amino Acids

38.33

Weight (kDa)

9.32

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAGA_bind PF06217 1 - 342 8.9e-115 GAGA binding protein-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 906
AccI GTMKAC 1 cut(s) 934
AciI CCGC 4 cut(s) 236, 380, 645, 906
AclWI GGATC 2 cut(s) 368, 467
AcoI YGGCCR 3 cut(s) 120, 129, 892
AcsI RAATTY 2 cut(s) 160, 348
AcuI CTGAAG 3 cut(s) 269, 675, 966
AcvI CACGTG 1 cut(s) 356
AfaI GTAC 3 cut(s) 290, 393, 430
AfiI CCNNNNNNNGG 1 cut(s) 495
AgeI ACCGGT 1 cut(s) 754
AgsI TTSAA 5 cut(s) 152, 260, 592, 718, 919
AjnI CCWGG 3 cut(s) 337, 708, 720
AjuI GAANNNNNNNTTGG 2 cut(s) 793, 825
AleI CACNNNNGTG 1 cut(s) 757
AluBI AGCT 4 cut(s) 62, 419, 485, 944
AluI AGCT 4 cut(s) 62, 419, 485, 944
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 2 cut(s) 195, 258
AlwI GGATC 2 cut(s) 368, 467
AlwNI CAGNNNCTG 1 cut(s) 709
AoxI GGCC 6 cut(s) 120, 129, 165, 892, 949, 990
ApeKI GCWGC 7 cut(s) 59, 143, 217, 227, 382, 385, 941
ApoI RAATTY 2 cut(s) 160, 348
AsiGI ACCGGT 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 706, 990
AvaII GGWCC 1 cut(s) 706
BaeGI GKGCMC 1 cut(s) 867
BaeI ACNNNNGTAYC 2 cut(s) 272, 305
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 37, 188
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 7 cut(s) 71, 155, 229, 239, 394, 397, 953
BccI CCATC 2 cut(s) 2, 109
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 3 cut(s) 339, 710, 722
BcoDI GTCTC 2 cut(s) 195, 258
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 658
BisI GCNGC 7 cut(s) 60, 144, 218, 228, 383, 386, 942
BlsI GCNGC 7 cut(s) 61, 145, 219, 229, 384, 387, 943
Bme1390I CCNGG 3 cut(s) 339, 710, 722
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 2 cut(s) 706, 990
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 3 cut(s) 339, 710, 722
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 6 cut(s) 25, 69, 130, 214, 332, 429
BmuI ACTGGG 1 cut(s) 997
BpiI GAAGAC 2 cut(s) 37, 188
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 962
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 560, 709
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 5 cut(s) 312, 775, 942, 968, 992
Bse3DI GCAATG 3 cut(s) 273, 325, 791
BseBI CCWGG 3 cut(s) 339, 710, 722
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 560, 709
BseGI GGATG 2 cut(s) 10, 347
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 3 cut(s) 273, 325, 791
BseMII CTCAG 3 cut(s) 77, 165, 770
BseNI ACTGG 5 cut(s) 312, 775, 942, 968, 992
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 7 cut(s) 71, 155, 229, 239, 394, 397, 953
BsgI GTGCAG 1 cut(s) 751
BshFI GGCC 6 cut(s) 122, 131, 167, 894, 951, 992
BshTI ACCGGT 1 cut(s) 754
BshVI ATCGAT 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 2 cut(s) 755, 895
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 195, 258
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 6 cut(s) 122, 131, 167, 894, 951, 992
Bsp1286I GDGCHC 3 cut(s) 522, 764, 867
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 5 cut(s) 360, 472, 658, 955, 1020
BspACI CCGC 4 cut(s) 236, 380, 645, 906
BspANI GGCC 6 cut(s) 122, 131, 167, 894, 951, 992
BspCNI CTCAG 3 cut(s) 76, 166, 771
BspDI ATCGAT 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 519
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 368, 467
BsrBI CCGCTC 1 cut(s) 906
BsrDI GCAATG 3 cut(s) 273, 325, 791
BsrFI RCCGGY 1 cut(s) 754
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 5 cut(s) 312, 775, 942, 968, 992
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 2 cut(s) 560, 709
BssMI GATC 5 cut(s) 360, 472, 658, 955, 1020
BssSI CACGAG 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 820
Bst2UI CCWGG 3 cut(s) 339, 710, 722
Bst4CI ACNGT 1 cut(s) 672
BstAPI GCANNNNNTGC 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 750, 858
BstDEI CTNAG 3 cut(s) 63, 174, 779
BstF5I GGATG 2 cut(s) 10, 347
BstKTI GATC 5 cut(s) 363, 475, 661, 958, 1023
BstMAI GTCTC 2 cut(s) 195, 258
BstMBI GATC 5 cut(s) 360, 472, 658, 955, 1020
BstMWI GCNNNNNNNGC 4 cut(s) 128, 233, 379, 862
BstNI CCWGG 3 cut(s) 339, 710, 722
BstNSI RCATGY 2 cut(s) 392, 881
BstSCI CCNGG 3 cut(s) 337, 708, 720
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 7 cut(s) 71, 155, 229, 239, 394, 397, 953
BstV2I GAAGAC 2 cut(s) 37, 188
BstX2I RGATCY 2 cut(s) 472, 658
BstYI RGATCY 2 cut(s) 472, 658
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 6 cut(s) 122, 131, 167, 894, 951, 992
BsuTUI ATCGAT 1 cut(s) 104
BtsCI GGATG 2 cut(s) 10, 347
BtsI GCAGTG 2 cut(s) 851, 867
BtsIMutI CAGTG 5 cut(s) 77, 319, 768, 851, 867
Cac8I GCNNGC 2 cut(s) 750, 858
CaiI CAGNNNCTG 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 706, 990
ClaI ATCGAT 1 cut(s) 104
CsiI ACCWGGT 1 cut(s) 720
Csp6I GTAC 3 cut(s) 289, 392, 429
CspAI ACCGGT 1 cut(s) 754
CviAII CATG 9 cut(s) 205, 330, 389, 409, 617, 745, 878, 953, 998
CviQI GTAC 3 cut(s) 289, 392, 429
DdeI CTNAG 3 cut(s) 63, 174, 779
DpnI GATC 5 cut(s) 362, 474, 660, 957, 1022
DpnII GATC 5 cut(s) 360, 472, 658, 955, 1020
EaeI YGGCCR 3 cut(s) 120, 129, 892
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 3 cut(s) 269, 675, 966
Eco72I CACGTG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 3 cut(s) 337, 708, 720
EcoT14I CCWWGG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 9 cut(s) 208, 333, 392, 412, 620, 748, 881, 956, 1001
FatI CATG 9 cut(s) 204, 329, 388, 408, 616, 744, 877, 952, 997
FauI CCCGC 1 cut(s) 387
FauNDI CATATG 2 cut(s) 369, 424
FblI GTMKAC 1 cut(s) 934
Fnu4HI GCNGC 7 cut(s) 60, 144, 218, 228, 383, 386, 942
FokI GGATG 2 cut(s) 17, 354
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 7 cut(s) 60, 144, 218, 228, 383, 386, 942
FspBI CTAG 1 cut(s) 495
GluI GCNGC 7 cut(s) 60, 144, 218, 228, 383, 386, 942
HaeIII GGCC 6 cut(s) 122, 131, 167, 894, 951, 992
HapII CCGG 2 cut(s) 755, 895
Hin1II CATG 9 cut(s) 208, 333, 392, 412, 620, 748, 881, 956, 1001
HincII GTYRAC 2 cut(s) 935, 973
HindII GTYRAC 2 cut(s) 935, 973
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 4 cut(s) 33, 452, 737, 964
HpaII CCGG 2 cut(s) 755, 895
Hpy166II GTNNAC 3 cut(s) 335, 935, 973
Hpy188I TCNGA 3 cut(s) 175, 691, 780
Hpy188III TCNNGA 5 cut(s) 20, 152, 571, 635, 704
Hpy8I GTNNAC 3 cut(s) 335, 935, 973
HpyAV CCTTC 4 cut(s) 178, 559, 619, 941
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 2 cut(s) 355, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 233, 379, 862
HpyF3I CTNAG 3 cut(s) 63, 174, 779
HpySE526I ACGT 2 cut(s) 355, 602
Hsp92II CATG 9 cut(s) 208, 333, 392, 412, 620, 748, 881, 956, 1001
Kzo9I GATC 5 cut(s) 360, 472, 658, 955, 1020
LmnI GCTCC 3 cut(s) 490, 517, 767
Lsp1109I GCAGC 7 cut(s) 71, 155, 229, 239, 394, 397, 953
LweI GCATC 6 cut(s) 25, 69, 130, 214, 332, 429
MabI ACCWGGT 1 cut(s) 720
MaeI CTAG 1 cut(s) 495
MaeII ACGT 2 cut(s) 355, 602
MalI GATC 5 cut(s) 362, 474, 660, 957, 1022
MbiI CCGCTC 1 cut(s) 906
MboI GATC 5 cut(s) 360, 472, 658, 955, 1020
MboII GAAGA 6 cut(s) 42, 190, 193, 318, 668, 910
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 2 cut(s) 472, 658
MhlI GDGCHC 3 cut(s) 522, 764, 867
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 5 cut(s) 160, 231, 255, 348, 927
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 2 cut(s) 27, 731
MnlI CCTC 7 cut(s) 313, 486, 567, 577, 774, 829, 986
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 3 cut(s) 308, 663, 926
MslI CAYNNNNRTG 3 cut(s) 340, 411, 757
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 2 cut(s) 755, 895
MspR9I CCNGG 3 cut(s) 339, 710, 722
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 3 cut(s) 339, 710, 722
MwoI GCNNNNNNNGC 4 cut(s) 128, 233, 379, 862
NdeI CATATG 2 cut(s) 369, 424
NdeII GATC 5 cut(s) 360, 472, 658, 955, 1020
NlaIII CATG 9 cut(s) 208, 333, 392, 412, 620, 748, 881, 956, 1001
NlaIV GGNNCC 1 cut(s) 519
NmeAIII GCCGAG 1 cut(s) 157
NspI RCATGY 2 cut(s) 392, 881
OliI CACNNNNGTG 1 cut(s) 757
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 452, 964
PinAI ACCGGT 1 cut(s) 754
PkrI GCNGC 7 cut(s) 61, 145, 219, 229, 384, 387, 943
PleI GAGTC 2 cut(s) 27, 731
PmaCI CACGTG 1 cut(s) 356
PmlI CACGTG 1 cut(s) 356
PpsI GAGTC 2 cut(s) 27, 731
Ppu21I YACGTR 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 3 cut(s) 337, 708, 720
PspCI CACGTG 1 cut(s) 356
PspGI CCWGG 3 cut(s) 337, 708, 720
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 706, 990
PspPPI RGGWCCY 1 cut(s) 706
PstI CTGCAG 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 709
PsuI RGATCY 2 cut(s) 472, 658
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 3 cut(s) 290, 393, 430
RsaNI GTAC 3 cut(s) 289, 392, 429
RseI CAYNNNNRTG 3 cut(s) 340, 411, 757
SalI GTCGAC 1 cut(s) 933
SaqAI TTAA 3 cut(s) 308, 663, 926
SatI GCNGC 7 cut(s) 60, 144, 218, 228, 383, 386, 942
Sau3AI GATC 5 cut(s) 360, 472, 658, 955, 1020
Sau96I GGNCC 2 cut(s) 706, 990
SchI GAGTC 2 cut(s) 27, 731
ScrFI CCNGG 3 cut(s) 339, 710, 722
SduI GDGCHC 3 cut(s) 522, 764, 867
SexAI ACCWGGT 1 cut(s) 720
SfaNI GCATC 6 cut(s) 25, 69, 130, 214, 332, 429
SfcI CTRYAG 1 cut(s) 215
SfiI GGCCNNNNNGGCC 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 754
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 3 cut(s) 340, 411, 757
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 5 cut(s) 160, 231, 255, 348, 927
SsiI CCGC 4 cut(s) 236, 380, 645, 906
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 337, 708, 720
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 2 cut(s) 358, 605
TaqI TCGA 3 cut(s) 104, 934, 962
TasI AATT 5 cut(s) 160, 231, 255, 348, 927
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 2 cut(s) 452, 964
Tru1I TTAA 3 cut(s) 308, 663, 926
Tru9I TTAA 3 cut(s) 308, 663, 926
TscAI CASTG 5 cut(s) 77, 319, 775, 858, 867
TseI GCWGC 7 cut(s) 59, 143, 217, 227, 382, 385, 941
TspDTI ATGAA 5 cut(s) 122, 318, 411, 425, 429
TspRI CASTG 5 cut(s) 77, 319, 775, 858, 867
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 2 cut(s) 160, 348
XceI RCATGY 2 cut(s) 392, 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 934
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.