TFIIS helical bundle-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48050 AT3G48050 AT3G48060 AT3G48060 AT3G48060 |
| fragaria_vesca | FvH4_5g16640 FvH4_5g16640 FvH4_5g16640 FvH4_5g16640 |
| malus_domestica | MD06G1178400.v1.1 MD14G1184800.v1.1 |
| prunus_persica | Prupe.5G177500_v2.0.a1 Prupe.5G177500_v2.0.a1 |
| pyrus_communis | pycom06g15860 pycom14g15380 |
| rosa_chinensis | RchiOBHm_Chr7g0179511 |
| rosa_laevigata | RLG00000005348 |
| rosa_multiflora | Rmu_sc0000735.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00273930 |
| rosa_rugosa | Rorug06G0424900 Rorug06G0424900 Rorug06G0425000.1 |
| rosa_samantha | Rh7AG024900 Rh7BG024100 Rh7CG025500 Rh7DG025300 |
| rosa_wichuraiana | Rw7G002000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2155, 4382 |
| Acc36I | ACCTGC | 5 cut(s) | 1484, 1879, 2155, 4045, 4382 |
| Acc65I | GGTACC | 2 cut(s) | 838, 2063 |
| AccB1I | GGYRCC | 5 cut(s) | 838, 1474, 2063, 3823, 4715 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4193 |
| AccBSI | CCGCTC | 1 cut(s) | 667 |
| AccI | GTMKAC | 4 cut(s) | 2049, 2873, 3479, 4278 |
| AccII | CGCG | 1 cut(s) | 359 |
| AccIII | TCCGGA | 1 cut(s) | 4519 |
| AciI | CCGC | 9 cut(s) | 330, 667, 1165, 2204, 2360, 2655, 3401, 3638, 4713 |
| AclWI | GGATC | 9 cut(s) | 610, 860, 2118, 2131, 2441, 3100, 3280, 3858, 4294 |
| AcoI | YGGCCR | 2 cut(s) | 901, 3605 |
| AcsI | RAATTY | 6 cut(s) | 79, 294, 941, 2730, 3389, 4123 |
| AcyI | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| AdeI | CACNNNGTG | 1 cut(s) | 1934 |
| AfaI | GTAC | 5 cut(s) | 828, 840, 1869, 2065, 3720 |
| AflIII | ACRYGT | 5 cut(s) | 42, 1228, 1779, 2909, 3226 |
| AgeI | ACCGGT | 1 cut(s) | 4238 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 679, 2643 |
| AjiI | CACGTC | 1 cut(s) | 1780 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 166, 198, 240, 272 |
| AleI | CACNNNNGTG | 1 cut(s) | 3120 |
| Alw21I | GWGCWC | 8 cut(s) | 136, 1373, 1679, 1771, 2414, 2950, 3129, 4246 |
| Alw26I | GTCTC | 5 cut(s) | 666, 1605, 1770, 2548, 4614 |
| Alw44I | GTGCAC | 1 cut(s) | 2946 |
| AlwI | GGATC | 9 cut(s) | 610, 860, 2118, 2131, 2441, 3100, 3280, 3858, 4294 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1820, 4595 |
| Aor13HI | TCCGGA | 1 cut(s) | 4519 |
| ApaI | GGGCCC | 1 cut(s) | 2585 |
| ApaLI | GTGCAC | 1 cut(s) | 2946 |
| ApoI | RAATTY | 6 cut(s) | 79, 294, 941, 2730, 3389, 4123 |
| AseI | ATTAAT | 2 cut(s) | 471, 4512 |
| AsiGI | ACCGGT | 1 cut(s) | 4238 |
| Asp718I | GGTACC | 2 cut(s) | 838, 2063 |
| AspA2I | CCTAGG | 1 cut(s) | 1724 |
| AspLEI | GCGC | 1 cut(s) | 1477 |
| AsuC2I | CCSGG | 1 cut(s) | 1522 |
| AsuHPI | GGTGA | 8 cut(s) | 29, 1040, 2136, 2454, 2911, 3185, 3205, 4623 |
| AvaII | GGWCC | 9 cut(s) | 572, 1009, 2476, 3234, 3956, 4007, 4229, 4236, 4466 |
| AvrII | CCTAGG | 1 cut(s) | 1724 |
| AxyI | CCTNAGG | 2 cut(s) | 2472, 4737 |
| BaeGI | GKGCMC | 3 cut(s) | 1096, 2585, 2950 |
| BamHI | GGATCC | 1 cut(s) | 2123 |
| BanI | GGYRCC | 5 cut(s) | 838, 1474, 2063, 3823, 4715 |
| BanII | GRGCYC | 4 cut(s) | 1373, 1679, 1771, 2585 |
| BauI | CACGAG | 2 cut(s) | 2484, 4768 |
| BbsI | GAAGAC | 2 cut(s) | 2189, 3971 |
| Bbv12I | GWGCWC | 8 cut(s) | 136, 1373, 1679, 1771, 2414, 2950, 3129, 4246 |
| BbvCI | CCTCAGC | 1 cut(s) | 4680 |
| BceAI | ACGGC | 3 cut(s) | 1462, 1736, 3089 |
| BciVI | GTATCC | 1 cut(s) | 1357 |
| BclI | TGATCA | 4 cut(s) | 457, 1630, 3163, 3724 |
| BcnI | CCSGG | 1 cut(s) | 1522 |
| BcoDI | GTCTC | 5 cut(s) | 666, 1605, 1770, 2548, 4614 |
| BfmI | CTRYAG | 5 cut(s) | 2187, 3297, 3672, 4038, 4279 |
| BfoI | RGCGCY | 1 cut(s) | 1478 |
| BfuAI | ACCTGC | 5 cut(s) | 1484, 1879, 2155, 4045, 4382 |
| BfuI | GTATCC | 1 cut(s) | 1357 |
| BglII | AGATCT | 2 cut(s) | 892, 1957 |
| BlnI | CCTAGG | 1 cut(s) | 1724 |
| BlpI | GCTNAGC | 2 cut(s) | 282, 3612 |
| Bme18I | GGWCC | 9 cut(s) | 572, 1009, 2476, 3234, 3956, 4007, 4229, 4236, 4466 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 679, 2643 |
| BmgBI | CACGTC | 1 cut(s) | 1780 |
| BmrI | ACTGGG | 3 cut(s) | 2411, 3923, 4450 |
| BmuI | ACTGGG | 3 cut(s) | 2411, 3923, 4450 |
| BpiI | GAAGAC | 2 cut(s) | 2189, 3971 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2159, 2191 |
| BpmI | CTGGAG | 5 cut(s) | 1440, 1785, 3758, 4128, 4290 |
| Bpu10I | CCTNAGC | 4 cut(s) | 971, 2623, 3838, 4680 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 282, 3612 |
| BpuEI | CTTGAG | 2 cut(s) | 498, 3738 |
| BpuMI | CCSGG | 1 cut(s) | 1522 |
| Bsa29I | ATCGAT | 2 cut(s) | 3808, 3812 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3861 |
| BsaHI | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| BsaWI | WCCGGW | 2 cut(s) | 4238, 4519 |
| Bse118I | RCCGGY | 4 cut(s) | 411, 903, 2507, 4238 |
| Bse21I | CCTNAGG | 2 cut(s) | 2472, 4737 |
| Bse3DI | GCAATG | 1 cut(s) | 2449 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3861 |
| BseAI | TCCGGA | 1 cut(s) | 4519 |
| BseCI | ATCGAT | 2 cut(s) | 3808, 3812 |
| BseJI | GATNNNNATC | 1 cut(s) | 3861 |
| BseMI | GCAATG | 1 cut(s) | 2449 |
| BseRI | GAGGAG | 3 cut(s) | 1082, 1381, 2422 |
| BseSI | GKGCMC | 3 cut(s) | 1096, 2585, 2950 |
| BsgI | GTGCAG | 3 cut(s) | 557, 986, 3399 |
| Bsh1236I | CGCG | 1 cut(s) | 359 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3812 |
| BshNI | GGYRCC | 5 cut(s) | 838, 1474, 2063, 3823, 4715 |
| BshTI | ACCGGT | 1 cut(s) | 4238 |
| BshVI | ATCGAT | 2 cut(s) | 3808, 3812 |
| BsiEI | CGRYCG | 1 cut(s) | 3812 |
| BsiHKAI | GWGCWC | 8 cut(s) | 136, 1373, 1679, 1771, 2414, 2950, 3129, 4246 |
| BsiSI | CCGG | 7 cut(s) | 412, 904, 1522, 2508, 3604, 4239, 4520 |
| BslFI | GGGAC | 3 cut(s) | 561, 1268, 2572 |
| BsmAI | GTCTC | 5 cut(s) | 666, 1605, 1770, 2548, 4614 |
| BsmBI | CGTCTC | 1 cut(s) | 1770 |
| BsmFI | GGGAC | 3 cut(s) | 561, 1268, 2572 |
| BsmI | GAATGC | 4 cut(s) | 1336, 1996, 2887, 3287 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| Bsp120I | GGGCCC | 1 cut(s) | 2581 |
| Bsp13I | TCCGGA | 1 cut(s) | 4519 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 282, 3612 |
| Bsp19I | CCATGG | 1 cut(s) | 4643 |
| BspACI | CCGC | 9 cut(s) | 330, 667, 1165, 2204, 2360, 2655, 3401, 3638, 4713 |
| BspDI | ATCGAT | 2 cut(s) | 3808, 3812 |
| BspEI | TCCGGA | 1 cut(s) | 4519 |
| BspFNI | CGCG | 1 cut(s) | 359 |
| BspMAI | CTGCAG | 3 cut(s) | 2191, 3301, 4042 |
| BspMI | ACCTGC | 5 cut(s) | 1484, 1879, 2155, 4045, 4382 |
| BspPI | GGATC | 9 cut(s) | 610, 860, 2118, 2131, 2441, 3100, 3280, 3858, 4294 |
| BspQI | GCTCTTC | 2 cut(s) | 2160, 3441 |
| BspT107I | GGYRCC | 5 cut(s) | 838, 1474, 2063, 3823, 4715 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrBI | CCGCTC | 1 cut(s) | 667 |
| BsrDI | GCAATG | 1 cut(s) | 2449 |
| BsrFI | RCCGGY | 4 cut(s) | 411, 903, 2507, 4238 |
| BssAI | RCCGGY | 4 cut(s) | 411, 903, 2507, 4238 |
| BssNAI | GTATAC | 1 cut(s) | 2050 |
| BssNI | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| BssSI | CACGAG | 2 cut(s) | 2484, 4768 |
| BssT1I | CCWWGG | 5 cut(s) | 1301, 1724, 4232, 4496, 4643 |
| Bst1107I | GTATAC | 1 cut(s) | 2050 |
| Bst2BI | CACGAG | 2 cut(s) | 2484, 4768 |
| Bst6I | CTCTTC | 4 cut(s) | 2160, 2472, 2694, 3441 |
| BstACI | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| BstDSI | CCRYGG | 1 cut(s) | 4643 |
| BstEII | GGTNACC | 2 cut(s) | 1305, 2142 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 4723, 4740 |
| BstFNI | CGCG | 1 cut(s) | 359 |
| BstH2I | RGCGCY | 1 cut(s) | 1478 |
| BstHHI | GCGC | 1 cut(s) | 1477 |
| BstMAI | GTCTC | 5 cut(s) | 666, 1605, 1770, 2548, 4614 |
| BstMCI | CGRYCG | 1 cut(s) | 3812 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 2357, 2789, 2954, 3596, 3613, 3912, 4037, 4388 |
| BstNSI | RCATGY | 6 cut(s) | 46, 530, 2276, 2913, 3230, 4783 |
| BstPI | GGTNACC | 2 cut(s) | 1305, 2142 |
| BstSFI | CTRYAG | 5 cut(s) | 2187, 3297, 3672, 4038, 4279 |
| BstSLI | GKGCMC | 3 cut(s) | 1096, 2585, 2950 |
| BstUI | CGCG | 1 cut(s) | 359 |
| BstV2I | GAAGAC | 2 cut(s) | 2189, 3971 |
| BstX2I | RGATCY | 7 cut(s) | 865, 892, 1957, 2123, 3092, 3272, 3850 |
| BstYI | RGATCY | 7 cut(s) | 865, 892, 1957, 2123, 3092, 3272, 3850 |
| BstZ17I | GTATAC | 1 cut(s) | 2050 |
| Bsu15I | ATCGAT | 2 cut(s) | 3808, 3812 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2472, 4737 |
| BsuI | GTATCC | 1 cut(s) | 1357 |
| BsuTUI | ATCGAT | 2 cut(s) | 3808, 3812 |
| BtgI | CCRYGG | 1 cut(s) | 4643 |
| BtrI | CACGTC | 1 cut(s) | 1780 |
| BtsI | GCAGTG | 3 cut(s) | 1042, 4072, 4317 |
| BveI | ACCTGC | 5 cut(s) | 1484, 1879, 2155, 4045, 4382 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1820, 4595 |
| CfoI | GCGC | 1 cut(s) | 1477 |
| Cfr10I | RCCGGY | 4 cut(s) | 411, 903, 2507, 4238 |
| ClaI | ATCGAT | 2 cut(s) | 3808, 3812 |
| CseI | GACGC | 4 cut(s) | 117, 1676, 2417, 3699 |
| CsiI | ACCWGGT | 2 cut(s) | 2236, 4468 |
| Csp6I | GTAC | 5 cut(s) | 827, 839, 1868, 2064, 3719 |
| CspAI | ACCGGT | 1 cut(s) | 4238 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 1339, 1374, 4751 |
| CviQI | GTAC | 5 cut(s) | 827, 839, 1868, 2064, 3719 |
| DinI | GGCGCC | 1 cut(s) | 1476 |
| DraI | TTTAAA | 3 cut(s) | 759, 1272, 2107 |
| DraIII | CACNNNGTG | 1 cut(s) | 1934 |
| DriI | GACNNNNNGTC | 2 cut(s) | 679, 2643 |
| EaeI | YGGCCR | 2 cut(s) | 901, 3605 |
| Eam1104I | CTCTTC | 4 cut(s) | 2160, 2472, 2694, 3441 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 679, 2643 |
| EarI | CTCTTC | 4 cut(s) | 2160, 2472, 2694, 3441 |
| Ecl136II | GAGCTC | 3 cut(s) | 1371, 1677, 1769 |
| Eco130I | CCWWGG | 5 cut(s) | 1301, 1724, 4232, 4496, 4643 |
| Eco147I | AGGCCT | 1 cut(s) | 3369 |
| Eco24I | GRGCYC | 4 cut(s) | 1373, 1679, 1771, 2585 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| Eco47I | GGWCC | 9 cut(s) | 572, 1009, 2476, 3234, 3956, 4007, 4229, 4236, 4466 |
| Eco53kI | GAGCTC | 3 cut(s) | 1371, 1677, 1769 |
| Eco81I | CCTNAGG | 2 cut(s) | 2472, 4737 |
| Eco91I | GGTNACC | 2 cut(s) | 1305, 2142 |
| EcoICRI | GAGCTC | 3 cut(s) | 1371, 1677, 1769 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 4723, 4740 |
| EcoO109I | RGGNCCY | 5 cut(s) | 2476, 2581, 2582, 4466, 4592 |
| EcoO65I | GGTNACC | 2 cut(s) | 1305, 2142 |
| EcoRI | GAATTC | 1 cut(s) | 79 |
| EcoT14I | CCWWGG | 5 cut(s) | 1301, 1724, 4232, 4496, 4643 |
| EcoT22I | ATGCAT | 5 cut(s) | 6, 528, 1998, 2274, 2889 |
| EcoT38I | GRGCYC | 4 cut(s) | 1373, 1679, 1771, 2585 |
| EgeI | GGCGCC | 1 cut(s) | 1476 |
| EheI | GGCGCC | 1 cut(s) | 1476 |
| ErhI | CCWWGG | 5 cut(s) | 1301, 1724, 4232, 4496, 4643 |
| Esp3I | CGTCTC | 1 cut(s) | 1770 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 240, 272, 780, 812, 2570, 2602, 3963, 3995 |
| FaqI | GGGAC | 3 cut(s) | 561, 1268, 2572 |
| FauI | CCCGC | 1 cut(s) | 660 |
| FbaI | TGATCA | 4 cut(s) | 457, 1630, 3163, 3724 |
| FblI | GTMKAC | 4 cut(s) | 2049, 2873, 3479, 4278 |
| FriOI | GRGCYC | 4 cut(s) | 1373, 1679, 1771, 2585 |
| GlaI | GCGC | 1 cut(s) | 1476 |
| GsuI | CTGGAG | 5 cut(s) | 1440, 1785, 3758, 4128, 4290 |
| HaeII | RGCGCY | 1 cut(s) | 1478 |
| HapII | CCGG | 7 cut(s) | 412, 904, 1522, 2508, 3604, 4239, 4520 |
| HgaI | GACGC | 4 cut(s) | 117, 1676, 2417, 3699 |
| HhaI | GCGC | 1 cut(s) | 1477 |
| Hin1I | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| Hin6I | GCGC | 1 cut(s) | 1475 |
| HinP1I | GCGC | 1 cut(s) | 1475 |
| HincII | GTYRAC | 3 cut(s) | 48, 2077, 3939 |
| HindII | GTYRAC | 3 cut(s) | 48, 2077, 3939 |
| HindIII | AAGCTT | 4 cut(s) | 254, 380, 1412, 3081 |
| HpaI | GTTAAC | 1 cut(s) | 2077 |
| HpaII | CCGG | 7 cut(s) | 412, 904, 1522, 2508, 3604, 4239, 4520 |
| HphI | GGTGA | 8 cut(s) | 29, 1040, 2136, 2454, 2911, 3185, 3205, 4623 |
| Hpy99I | CGWCG | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 6 cut(s) | 703, 1228, 1779, 2112, 3311, 4385 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 2357, 2789, 2954, 3596, 3613, 3912, 4037, 4388 |
| HpySE526I | ACGT | 6 cut(s) | 703, 1228, 1779, 2112, 3311, 4385 |
| Hsp92I | GRCGYC | 3 cut(s) | 1475, 1668, 3691 |
| HspAI | GCGC | 1 cut(s) | 1475 |
| KasI | GGCGCC | 1 cut(s) | 1474 |
| Kpn2I | TCCGGA | 1 cut(s) | 4519 |
| KpnI | GGTACC | 2 cut(s) | 842, 2067 |
| KroI | GCCGGC | 1 cut(s) | 411 |
| KroNI | GCCGGC | 1 cut(s) | 413 |
| Ksp22I | TGATCA | 4 cut(s) | 457, 1630, 3163, 3724 |
| KspAI | GTTAAC | 1 cut(s) | 2077 |
| LguI | GCTCTTC | 2 cut(s) | 2160, 3441 |
| MabI | ACCWGGT | 2 cut(s) | 2236, 4468 |
| MaeII | ACGT | 6 cut(s) | 703, 1228, 1779, 2112, 3311, 4385 |
| MbiI | CCGCTC | 1 cut(s) | 667 |
| MfeI | CAATTG | 1 cut(s) | 4212 |
| MflI | RGATCY | 7 cut(s) | 865, 892, 1957, 2123, 3092, 3272, 3850 |
| Mly113I | GGCGCC | 1 cut(s) | 1475 |
| MlyI | GAGTC | 8 cut(s) | 43, 1869, 2093, 2168, 2463, 2632, 2730, 2903 |
| MmeI | TCCRAC | 8 cut(s) | 255, 2302, 2507, 3123, 3332, 3554, 3934, 4512 |
| Mph1103I | ATGCAT | 5 cut(s) | 6, 528, 1998, 2274, 2889 |
| MroI | TCCGGA | 1 cut(s) | 4519 |
| MroNI | GCCGGC | 1 cut(s) | 411 |
| MslI | CAYNNNNRTG | 5 cut(s) | 315, 1341, 2882, 3120, 3421 |
| MspA1I | CMGCKG | 4 cut(s) | 3611, 3640, 3677, 4163 |
| MspI | CCGG | 7 cut(s) | 412, 904, 1522, 2508, 3604, 4239, 4520 |
| MunI | CAATTG | 1 cut(s) | 4212 |
| Mva1269I | GAATGC | 4 cut(s) | 1336, 1996, 2887, 3287 |
| MvnI | CGCG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 2357, 2789, 2954, 3596, 3613, 3912, 4037, 4388 |
| NaeI | GCCGGC | 1 cut(s) | 413 |
| NarI | GGCGCC | 1 cut(s) | 1475 |
| NciI | CCSGG | 1 cut(s) | 1522 |
| NcoI | CCATGG | 1 cut(s) | 4643 |
| NgoMIV | GCCGGC | 1 cut(s) | 411 |
| NmuCI | GTSAC | 8 cut(s) | 734, 1479, 1540, 2142, 2171, 2635, 4024, 4165 |
| NsiI | ATGCAT | 5 cut(s) | 6, 528, 1998, 2274, 2889 |
| NspI | RCATGY | 6 cut(s) | 46, 530, 2276, 2913, 3230, 4783 |
| OliI | CACNNNNGTG | 1 cut(s) | 3120 |
| PaeI | GCATGC | 2 cut(s) | 530, 2276 |
| PaqCI | CACCTGC | 2 cut(s) | 2155, 4382 |
| PceI | AGGCCT | 1 cut(s) | 3369 |
| PciI | ACATGT | 3 cut(s) | 42, 2909, 3226 |
| PciSI | GCTCTTC | 2 cut(s) | 2160, 3441 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1149 |
| PctI | GAATGC | 4 cut(s) | 1336, 1996, 2887, 3287 |
| PdiI | GCCGGC | 1 cut(s) | 413 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4193 |
| PfoI | TCCNGGA | 1 cut(s) | 1520 |
| PinAI | ACCGGT | 1 cut(s) | 4238 |
| Ple19I | CGATCG | 1 cut(s) | 3812 |
| PleI | GAGTC | 8 cut(s) | 42, 1868, 2092, 2168, 2462, 2632, 2729, 2902 |
| PluTI | GGCGCC | 1 cut(s) | 1478 |
| PpsI | GAGTC | 8 cut(s) | 42, 1868, 2092, 2168, 2462, 2632, 2729, 2902 |
| PpuMI | RGGWCCY | 2 cut(s) | 2476, 4466 |
| PscI | ACATGT | 3 cut(s) | 42, 2909, 3226 |
| PshBI | ATTAAT | 2 cut(s) | 471, 4512 |
| Psp124BI | GAGCTC | 3 cut(s) | 1373, 1679, 1771 |
| Psp5II | RGGWCCY | 2 cut(s) | 2476, 4466 |
| PspEI | GGTNACC | 2 cut(s) | 1305, 2142 |
| PspOMI | GGGCCC | 1 cut(s) | 2581 |
| PspPPI | RGGWCCY | 2 cut(s) | 2476, 4466 |
| PstI | CTGCAG | 3 cut(s) | 2191, 3301, 4042 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1820, 4595 |
| PsuI | RGATCY | 7 cut(s) | 865, 892, 1957, 2123, 3092, 3272, 3850 |
| PvuI | CGATCG | 1 cut(s) | 3812 |
| PvuII | CAGCTG | 3 cut(s) | 3611, 3677, 4163 |
| RsaI | GTAC | 5 cut(s) | 828, 840, 1869, 2065, 3720 |
| RsaNI | GTAC | 5 cut(s) | 827, 839, 1868, 2064, 3719 |
| RseI | CAYNNNNRTG | 5 cut(s) | 315, 1341, 2882, 3120, 3421 |
| SacI | GAGCTC | 3 cut(s) | 1373, 1679, 1771 |
| SapI | GCTCTTC | 2 cut(s) | 2160, 3441 |
| SchI | GAGTC | 8 cut(s) | 43, 1869, 2093, 2168, 2463, 2632, 2730, 2903 |
| SexAI | ACCWGGT | 2 cut(s) | 2236, 4468 |
| SfcI | CTRYAG | 5 cut(s) | 2187, 3297, 3672, 4038, 4279 |
| SfoI | GGCGCC | 1 cut(s) | 1476 |
| SinI | GGWCC | 9 cut(s) | 572, 1009, 2476, 3234, 3956, 4007, 4229, 4236, 4466 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 315, 1341, 2882, 3120, 3421 |
| SmlI | CTYRAG | 2 cut(s) | 513, 3753 |
| SmoI | CTYRAG | 2 cut(s) | 513, 3753 |
| SphI | GCATGC | 2 cut(s) | 530, 2276 |
| SseBI | AGGCCT | 1 cut(s) | 3369 |
| SsiI | CCGC | 9 cut(s) | 330, 667, 1165, 2204, 2360, 2655, 3401, 3638, 4713 |
| SspDI | GGCGCC | 1 cut(s) | 1474 |
| SspI | AATATT | 3 cut(s) | 1432, 3655, 3910 |
| SstI | GAGCTC | 3 cut(s) | 1373, 1679, 1771 |
| StuI | AGGCCT | 1 cut(s) | 3369 |
| StyI | CCWWGG | 5 cut(s) | 1301, 1724, 4232, 4496, 4643 |
| TaiI | ACGT | 6 cut(s) | 706, 1231, 1782, 2115, 3314, 4388 |
| TauI | GCSGC | 6 cut(s) | 332, 2207, 2363, 3403, 3640, 4716 |
| TseFI | GTSAC | 8 cut(s) | 734, 1479, 1540, 2142, 2171, 2635, 4024, 4165 |
| Tsp45I | GTSAC | 8 cut(s) | 734, 1479, 1540, 2142, 2171, 2635, 4024, 4165 |
| TspGWI | ACGGA | 7 cut(s) | 46, 120, 170, 336, 1141, 1437, 3032 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4193 |
| VneI | GTGCAC | 1 cut(s) | 2946 |
| VpaK11BI | GGWCC | 9 cut(s) | 572, 1009, 2476, 3234, 3956, 4007, 4229, 4236, 4466 |
| VspI | ATTAAT | 2 cut(s) | 471, 4512 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 4723, 4740 |
| XapI | RAATTY | 6 cut(s) | 79, 294, 941, 2730, 3389, 4123 |
| XceI | RCATGY | 6 cut(s) | 46, 530, 2276, 2913, 3230, 4783 |
| XmaJI | CCTAGG | 1 cut(s) | 1724 |
| XmiI | GTMKAC | 4 cut(s) | 2049, 2873, 3479, 4278 |
| Zsp2I | ATGCAT | 5 cut(s) | 6, 528, 1998, 2274, 2889 |